Wall clock time and date at job start Sun Mar 29 2020 22:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47528 * 2 1 4 4 C 1.53001 * 109.46893 * 240.00043 * 2 1 3 5 5 C 1.53002 * 109.46986 * 299.99813 * 4 2 1 6 6 C 1.52996 * 109.47441 * 300.00185 * 5 4 2 7 7 C 1.53001 * 109.47182 * 59.99935 * 6 5 4 8 8 C 1.52998 * 109.47059 * 299.99999 * 7 6 5 9 9 H 1.09003 * 109.47249 * 300.00013 * 8 7 6 10 10 N 1.46893 * 109.47241 * 179.97438 * 8 7 6 11 11 C 1.46910 * 110.99761 * 84.99964 * 10 8 7 12 12 C 1.53002 * 109.46906 * 180.02562 * 11 10 8 13 13 H 1.08996 * 109.47407 * 304.99784 * 12 11 10 14 14 C 1.47206 * 109.47021 * 65.00197 * 12 11 10 15 15 N 5.85795 * 70.63005 * 95.75086 * 2 1 3 16 16 C 1.52997 * 109.46817 * 185.00004 * 12 11 10 17 17 C 1.50698 * 109.46933 * 175.00167 * 16 12 11 18 18 H 1.08003 * 120.00121 * 0.02562 * 17 16 12 19 19 C 1.37882 * 119.99840 * 179.97438 * 17 16 12 20 20 N 1.31510 * 120.00071 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99922 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47095 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47107 * 120.00101 * 21 19 17 24 24 H 1.48503 * 109.47150 * 240.00344 * 21 19 17 25 25 H 1.09008 * 109.46984 * 299.99889 * 1 2 3 26 26 H 1.08997 * 109.47467 * 59.99909 * 1 2 3 27 27 H 1.08998 * 109.47528 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47101 * 180.02562 * 4 2 1 29 29 H 1.08998 * 109.47191 * 60.00303 * 4 2 1 30 30 H 1.09008 * 109.46885 * 180.02562 * 5 4 2 31 31 H 1.09003 * 109.47003 * 60.00182 * 5 4 2 32 32 H 1.09003 * 109.47019 * 299.99987 * 6 5 4 33 33 H 1.09004 * 109.46782 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47191 * 179.97438 * 7 6 5 35 35 H 1.09002 * 109.46586 * 60.00211 * 7 6 5 36 36 H 1.00899 * 110.99952 * 321.05189 * 10 8 7 37 37 H 1.08997 * 109.46998 * 60.00442 * 11 10 8 38 38 H 1.08997 * 109.46873 * 300.00074 * 11 10 8 39 39 H 1.08998 * 109.47192 * 294.99969 * 16 12 11 40 40 H 1.09000 * 109.47325 * 55.00085 * 16 12 11 41 41 H 0.97004 * 119.99924 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5299 -2.1638 -1.2492 6 6 2.0399 -2.8850 0.0000 7 6 1.5299 -2.1638 1.2493 8 6 2.0400 -0.7213 1.2493 9 1 3.1300 -0.7214 1.2492 10 7 1.5499 -0.0286 2.4483 11 6 2.4332 -0.2744 3.5962 12 6 1.8911 0.4610 4.8235 13 1 1.7678 1.5182 4.5885 14 6 0.5897 -0.1123 5.2038 15 7 -0.4129 -0.5538 5.4986 16 6 2.8748 0.3082 5.9853 17 6 2.4026 1.1326 7.1550 18 1 1.4917 1.7077 7.0777 19 6 3.1329 1.1519 8.3244 20 7 4.2418 0.4512 8.4188 21 14 2.5479 2.1744 9.7742 22 1 1.2832 2.8647 9.4148 23 1 2.3128 1.2881 10.9423 24 1 3.5823 3.1828 10.1182 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1299 -0.7217 -1.2491 29 1 1.6766 -0.2074 -2.1392 30 1 1.8936 -2.6778 -2.1390 31 1 0.4399 -2.1637 -1.2492 32 1 3.1299 -2.8851 0.0000 33 1 1.6768 -3.9128 -0.0003 34 1 1.8929 -2.6779 2.1392 35 1 0.4399 -2.1638 1.2492 36 1 0.6005 -0.2977 2.6586 37 1 3.4352 0.0887 3.3679 38 1 2.4725 -1.3441 3.8019 39 1 2.9306 -0.7401 6.2786 40 1 3.8613 0.6513 5.6736 41 1 4.7557 0.4651 9.2413 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249516580.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:10 Heat of formation + Delta-G solvation = -28.711053 kcal Electronic energy + Delta-G solvation = -18414.180400 eV Core-core repulsion = 15712.632570 eV Total energy + Delta-G solvation = -2701.547830 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.48747 -38.51610 -36.14645 -35.24294 -33.32014 -32.70763 -30.21188 -28.12459 -26.99763 -24.51634 -23.56608 -23.16092 -22.30727 -19.47528 -18.52939 -18.22584 -17.07549 -16.71130 -16.27768 -15.74279 -15.25058 -14.96140 -14.74405 -14.50489 -14.23284 -14.01658 -13.83082 -13.76190 -13.49459 -13.30789 -13.08931 -12.77317 -12.52834 -12.47856 -12.46515 -12.30920 -12.00138 -11.97564 -11.75965 -11.47167 -11.24156 -11.20755 -10.92024 -10.82500 -10.56197 -9.27207 -8.20174 -6.28421 1.38779 1.41637 1.52269 1.94038 1.96106 2.41092 3.14988 3.18845 3.25079 3.79236 3.87725 4.09499 4.17103 4.30525 4.35257 4.41662 4.48589 4.54002 4.59758 4.70928 4.73528 4.83082 4.92848 4.97735 5.03630 5.07930 5.13022 5.18143 5.24961 5.27946 5.44323 5.46639 5.47808 5.54872 5.62413 5.69434 5.78892 6.10070 6.22530 6.38854 6.74326 6.86739 7.40305 8.91006 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.040333 B = 0.004152 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.055946 B = 6741.336550 C = 6897.969985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.075 4.075 3 H 0.071 0.929 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.112 4.112 7 C -0.150 4.150 8 C 0.093 3.907 9 H 0.080 0.920 10 N -0.685 5.685 11 C 0.079 3.921 12 C 0.018 3.982 13 H 0.122 0.878 14 C 0.252 3.748 15 N -0.504 5.504 16 C 0.038 3.962 17 C -0.539 4.539 18 H 0.054 0.946 19 C 0.011 3.989 20 N -0.924 5.924 21 Si 0.949 3.051 22 H -0.270 1.270 23 H -0.285 1.285 24 H -0.272 1.272 25 H 0.046 0.954 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.333 0.667 37 H 0.103 0.897 38 H 0.030 0.970 39 H -0.001 1.001 40 H 0.036 0.964 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.044 -2.914 -20.588 20.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.094 4.094 3 H 0.090 0.910 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.150 4.150 7 C -0.189 4.189 8 C -0.017 4.017 9 H 0.098 0.902 10 N -0.314 5.314 11 C -0.052 4.052 12 C -0.003 4.003 13 H 0.140 0.860 14 C -0.065 4.065 15 N -0.182 5.182 16 C -0.001 4.001 17 C -0.577 4.577 18 H 0.072 0.928 19 C -0.187 4.187 20 N -0.564 5.564 21 Si 0.775 3.225 22 H -0.194 1.194 23 H -0.211 1.211 24 H -0.197 1.197 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.151 0.849 37 H 0.121 0.879 38 H 0.048 0.952 39 H 0.018 0.982 40 H 0.054 0.946 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.123 -3.002 -20.187 20.646 hybrid contribution -0.063 -0.423 1.541 1.599 sum -3.186 -3.425 -18.646 19.224 Atomic orbital electron populations 1.21878 0.95590 1.01496 1.01500 1.21033 0.95857 0.99322 0.93210 0.91020 1.21560 1.00779 0.95436 0.97122 1.21571 1.00914 0.95686 0.97467 1.21447 1.00906 0.98716 0.93950 1.22272 1.00967 0.97120 0.98588 1.21647 0.99531 0.90632 0.89877 0.90154 1.60711 1.05437 1.61392 1.03894 1.21946 0.97926 0.97421 0.87883 1.19239 0.84104 1.00861 0.96136 0.86007 1.29605 0.94283 0.91720 0.90847 1.80960 1.14287 1.11816 1.11119 1.18986 0.94164 0.96050 0.90850 1.21587 1.08627 1.28442 0.99033 0.92821 1.25715 0.95077 0.96680 1.01276 1.70038 1.16139 1.42158 1.28031 0.85635 0.78636 0.78853 0.79396 1.19389 1.21100 1.19739 0.93512 0.92221 0.92614 0.91642 0.90992 0.91098 0.91924 0.91675 0.91975 0.93490 0.92166 0.84866 0.87864 0.95214 0.98227 0.94553 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.23 71.98 0.59 -2.12 16 2 C -0.08 -1.36 2.91 -10.79 -0.03 -1.39 16 3 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.11 -1.61 5.45 30.60 0.17 -1.44 16 5 C -0.12 -1.68 5.65 30.59 0.17 -1.51 16 6 C -0.11 -1.84 5.92 30.59 0.18 -1.66 16 7 C -0.15 -3.07 4.90 30.59 0.15 -2.92 16 8 C 0.09 1.94 2.17 44.92 0.10 2.04 16 9 H 0.08 1.68 7.80 -2.39 -0.02 1.66 16 10 N -0.68 -17.37 5.76 -491.56 -2.83 -20.20 16 11 C 0.08 2.27 4.92 86.30 0.42 2.69 16 12 C 0.02 0.67 2.42 -12.60 -0.03 0.64 16 13 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 14 C 0.25 10.17 12.97 89.46 1.16 11.33 16 15 N -0.50 -22.02 18.53 19.99 0.37 -21.65 16 16 C 0.04 1.79 4.42 29.85 0.13 1.92 16 17 C -0.54 -28.82 8.60 25.60 0.22 -28.60 16 18 H 0.05 2.85 7.59 -2.91 -0.02 2.83 16 19 C 0.01 0.63 5.46 84.66 0.46 1.09 16 20 N -0.92 -53.33 13.29 21.45 0.28 -53.05 16 21 Si 0.95 43.71 29.54 68.60 2.03 45.74 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 H 0.05 0.99 7.21 -2.38 -0.02 0.98 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.05 1.00 4.81 -2.39 -0.01 0.99 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.06 0.92 6.43 -2.39 -0.02 0.90 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 0.97 8.14 -2.38 -0.02 0.96 16 34 H 0.05 1.09 7.46 -2.39 -0.02 1.07 16 35 H 0.06 1.29 6.42 -2.39 -0.02 1.27 16 36 H 0.33 9.06 6.80 -89.69 -0.61 8.45 16 37 H 0.10 2.75 8.06 -2.39 -0.02 2.73 16 38 H 0.03 0.89 7.43 -2.39 -0.02 0.87 16 39 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.04 1.71 8.14 -2.39 -0.02 1.70 16 41 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -60.06 322.17 3.94 -56.12 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.39 Total: 12.97 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 3.70 Total: -19.93 kcal Atomic # 7 Polarization: -92.72 SS G_CDS: -2.18 Total: -94.89 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -60.06 3.94 -56.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249516580.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.410 kcal (2) G-P(sol) polarization free energy of solvation -60.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds