Wall clock time and date at job start Sun Mar 29 2020 23:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46937 * 2 1 4 4 C 1.50695 * 109.47357 * 119.99845 * 2 1 3 5 5 H 1.07997 * 120.00304 * 120.00419 * 4 2 1 6 6 C 1.37875 * 120.00122 * 300.00241 * 4 2 1 7 7 N 1.31518 * 119.99949 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00182 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47390 * 59.99876 * 8 6 4 10 10 H 1.48503 * 109.47167 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46958 * 299.99814 * 8 6 4 12 12 N 1.46502 * 109.47019 * 240.00252 * 2 1 3 13 13 C 1.39031 * 120.00384 * 85.00150 * 12 2 1 14 14 C 1.39430 * 119.61172 * 359.97438 * 13 12 2 15 15 C 1.38294 * 119.33832 * 180.02562 * 14 13 12 16 16 C 1.38874 * 118.58383 * 0.25596 * 15 14 13 17 17 Cl 1.73608 * 120.40181 * 179.74958 * 16 15 14 18 18 C 1.39367 * 119.19249 * 359.49974 * 16 15 14 19 19 C 1.43195 * 119.71067 * 180.25476 * 18 16 15 20 20 N 7.10720 * 106.89455 * 259.02258 * 2 1 3 21 21 N 1.32079 * 119.61734 * 180.02562 * 13 12 2 22 22 H 1.08999 * 109.47012 * 299.99932 * 1 2 3 23 23 H 1.08997 * 109.47043 * 60.00236 * 1 2 3 24 24 H 1.08997 * 109.46511 * 180.02562 * 1 2 3 25 25 H 0.96996 * 120.00398 * 179.97438 * 7 6 4 26 26 H 0.96997 * 119.99944 * 264.99348 * 12 2 1 27 27 H 1.08002 * 120.33277 * 0.04771 * 14 13 12 28 28 H 1.08002 * 120.70384 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6534 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3227 -1.1194 4.0079 9 1 3.8076 -1.1188 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8282 -2.5197 4.0081 12 7 2.0183 -0.6906 -1.1962 13 6 2.1512 0.0030 -2.3938 14 6 1.8168 1.3555 -2.4475 15 6 1.9506 2.0398 -3.6418 16 6 2.4115 1.3493 -4.7551 17 17 2.5912 2.1603 -6.2796 18 6 2.7331 -0.0011 -4.6323 19 6 3.2146 -0.7225 -5.7718 20 7 3.5955 -1.2950 -6.6760 21 7 2.5917 -0.6273 -3.4677 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 0.7089 1.1615 3.4843 26 1 2.2491 -1.6317 -1.1527 27 1 1.4572 1.8639 -1.5650 28 1 1.6976 3.0876 -3.7083 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267229735.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:33 Heat of formation + Delta-G solvation = 60.428563 kcal Electronic energy + Delta-G solvation = -15176.378207 eV Core-core repulsion = 12446.479731 eV Total energy + Delta-G solvation = -2729.898476 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.24057 -37.01775 -36.41065 -35.75550 -33.03092 -32.41924 -30.36499 -28.09639 -25.51254 -24.71421 -22.80303 -20.98819 -18.80433 -17.84872 -16.40526 -16.12885 -15.59237 -14.96705 -14.86699 -13.90976 -13.54009 -13.16196 -13.04875 -12.77234 -12.70717 -12.46503 -12.28353 -11.85590 -11.26502 -11.17323 -11.14658 -10.93350 -10.51405 -10.37064 -9.78244 -9.61051 -9.51799 -9.25847 -8.67399 -7.22256 -6.33627 -4.42496 0.71132 1.40564 2.13016 2.54176 3.00233 3.16376 3.21811 3.23480 3.43084 3.98624 4.03326 4.24699 4.84538 5.00189 5.02585 5.24067 5.49020 5.95545 6.01702 6.38307 6.46844 6.67928 6.77864 7.09311 7.33974 7.43936 7.48480 7.62761 7.86266 8.21172 8.36381 8.67073 9.25757 10.72523 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.041514 B = 0.004787 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.304231 B = 5848.024922 C = 6270.061530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.267 3.733 3 H 0.047 0.953 4 C -0.536 4.536 5 H 0.064 0.936 6 C 0.070 3.930 7 N -0.885 5.885 8 Si 0.905 3.095 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.684 5.684 13 C 0.425 3.575 14 C -0.197 4.197 15 C -0.024 4.024 16 C -0.126 4.126 17 Cl -0.066 7.066 18 C 0.253 3.747 19 C 0.275 3.725 20 N -0.393 5.393 21 N -0.521 5.521 22 H 0.095 0.905 23 H 0.016 0.984 24 H 0.034 0.966 25 H 0.268 0.732 26 H 0.401 0.599 27 H 0.156 0.844 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.048 3.927 -8.672 9.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.165 3.835 3 H 0.065 0.935 4 C -0.575 4.575 5 H 0.082 0.918 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.732 3.268 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.308 5.308 13 C 0.183 3.817 14 C -0.224 4.224 15 C -0.050 4.050 16 C -0.163 4.163 17 Cl -0.037 7.037 18 C 0.112 3.888 19 C -0.042 4.042 20 N -0.070 5.070 21 N -0.242 5.242 22 H 0.114 0.886 23 H 0.035 0.965 24 H 0.053 0.947 25 H 0.078 0.922 26 H 0.236 0.764 27 H 0.173 0.827 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.675 2.443 -9.689 10.015 hybrid contribution 0.014 0.310 1.118 1.160 sum 0.690 2.753 -8.571 9.029 Atomic orbital electron populations 1.22234 0.97996 1.00212 1.01030 1.18987 0.91165 0.93588 0.79787 0.93506 1.21102 1.32841 1.13669 0.89858 0.91764 1.24845 0.94544 0.94904 0.99113 1.69835 1.35613 1.22343 1.24444 0.86442 0.79293 0.79676 0.81408 1.20029 1.21018 1.20030 1.45739 1.65776 1.13169 1.06125 1.18510 0.88244 0.88808 0.86182 1.21882 1.06940 0.93972 0.99608 1.21140 0.93800 1.00287 0.89742 1.21263 1.13059 0.92627 0.89378 1.98349 1.96576 1.79093 1.29708 1.15680 0.97844 0.87380 0.87849 1.24939 0.93991 0.92934 0.92381 1.81159 1.07576 1.07561 1.10695 1.67162 1.21425 1.38016 0.97640 0.88621 0.96542 0.94716 0.92248 0.76387 0.82681 0.83318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 9.18 37.16 0.34 -2.89 15 2 C 0.27 5.67 2.24 -69.08 -0.16 5.52 15 3 H 0.05 1.05 6.44 -51.93 -0.33 0.72 15 4 C -0.54 -12.87 8.73 -34.44 -0.30 -13.17 15 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 15 6 C 0.07 1.71 5.30 -17.82 -0.09 1.61 15 7 N -0.89 -22.25 11.32 55.43 0.63 -21.63 15 8 Si 0.90 19.33 29.54 -169.99 -5.02 14.31 15 9 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 11 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 12 N -0.68 -12.80 5.24 -55.04 -0.29 -13.09 15 13 C 0.43 7.29 7.63 -155.15 -1.18 6.10 15 14 C -0.20 -2.96 8.83 -39.12 -0.35 -3.31 15 15 C -0.02 -0.31 9.96 -39.33 -0.39 -0.70 15 16 C -0.13 -1.72 6.36 -38.93 -0.25 -1.97 15 17 Cl -0.07 -0.81 28.03 -51.86 -1.45 -2.26 15 18 C 0.25 3.92 6.58 -85.03 -0.56 3.36 15 19 C 0.27 4.32 14.57 -22.48 -0.33 4.00 15 20 N -0.39 -6.48 18.54 41.84 0.78 -5.70 15 21 N -0.52 -8.87 10.31 -10.30 -0.11 -8.98 15 22 H 0.10 2.19 6.07 -51.93 -0.32 1.88 15 23 H 0.02 0.29 7.65 -51.93 -0.40 -0.10 15 24 H 0.03 0.71 8.14 -51.93 -0.42 0.29 15 25 H 0.27 6.47 8.31 -40.82 -0.34 6.13 15 26 H 0.40 7.34 8.66 -40.82 -0.35 6.99 15 27 H 0.16 2.34 6.05 -52.49 -0.32 2.03 15 28 H 0.15 1.43 8.06 -52.49 -0.42 1.00 15 LS Contribution 270.81 15.07 4.08 4.08 Total: -1.00 -24.53 270.81 -6.75 -31.29 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -2.10 Total: 3.43 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -3.26 Total: -1.46 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: 1.01 Total: -49.39 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.45 Total: -2.26 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -24.53 -6.75 -31.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267229735.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.715 kcal (2) G-P(sol) polarization free energy of solvation -24.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds