Wall clock time and date at job start Sun Mar 29 2020 23:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46937 * 2 1 4 4 C 1.50695 * 109.47357 * 119.99845 * 2 1 3 5 5 H 1.07997 * 120.00304 * 120.00419 * 4 2 1 6 6 C 1.37875 * 120.00122 * 300.00241 * 4 2 1 7 7 N 1.31518 * 119.99949 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00182 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47390 * 59.99876 * 8 6 4 10 10 H 1.48503 * 109.47167 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46958 * 299.99814 * 8 6 4 12 12 N 1.46502 * 109.47019 * 240.00252 * 2 1 3 13 13 C 1.39031 * 120.00384 * 85.00150 * 12 2 1 14 14 C 1.39430 * 119.61172 * 359.97438 * 13 12 2 15 15 C 1.38294 * 119.33832 * 180.02562 * 14 13 12 16 16 C 1.38874 * 118.58383 * 0.25596 * 15 14 13 17 17 Cl 1.73608 * 120.40181 * 179.74958 * 16 15 14 18 18 C 1.39367 * 119.19249 * 359.49974 * 16 15 14 19 19 C 1.43195 * 119.71067 * 180.25476 * 18 16 15 20 20 N 7.10720 * 106.89455 * 259.02258 * 2 1 3 21 21 N 1.32079 * 119.61734 * 180.02562 * 13 12 2 22 22 H 1.08999 * 109.47012 * 299.99932 * 1 2 3 23 23 H 1.08997 * 109.47043 * 60.00236 * 1 2 3 24 24 H 1.08997 * 109.46511 * 180.02562 * 1 2 3 25 25 H 0.96996 * 120.00398 * 179.97438 * 7 6 4 26 26 H 0.96997 * 119.99944 * 264.99348 * 12 2 1 27 27 H 1.08002 * 120.33277 * 0.04771 * 14 13 12 28 28 H 1.08002 * 120.70384 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6534 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3227 -1.1194 4.0079 9 1 3.8076 -1.1188 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8282 -2.5197 4.0081 12 7 2.0183 -0.6906 -1.1962 13 6 2.1512 0.0030 -2.3938 14 6 1.8168 1.3555 -2.4475 15 6 1.9506 2.0398 -3.6418 16 6 2.4115 1.3493 -4.7551 17 17 2.5912 2.1603 -6.2796 18 6 2.7331 -0.0011 -4.6323 19 6 3.2146 -0.7225 -5.7718 20 7 3.5955 -1.2950 -6.6760 21 7 2.5917 -0.6273 -3.4677 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 0.7089 1.1615 3.4843 26 1 2.2491 -1.6317 -1.1527 27 1 1.4572 1.8639 -1.5650 28 1 1.6976 3.0876 -3.7083 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267229735.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:32 Heat of formation + Delta-G solvation = 47.639817 kcal Electronic energy + Delta-G solvation = -15176.932769 eV Core-core repulsion = 12446.479731 eV Total energy + Delta-G solvation = -2730.453038 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.48415 -38.33061 -37.56684 -37.16788 -34.68040 -33.63304 -31.85216 -29.55018 -27.29627 -25.95669 -24.11280 -22.51756 -20.09543 -19.33834 -17.79943 -17.48169 -17.03758 -16.57823 -16.13236 -15.39336 -14.91173 -14.49680 -14.28025 -14.22912 -13.94841 -13.78465 -13.64629 -13.31324 -12.91549 -12.81104 -12.61583 -12.22155 -12.21307 -12.09406 -11.14939 -10.90123 -10.86281 -10.75915 -10.47096 -8.57938 -8.17643 -6.31202 -0.50157 0.24650 1.01094 1.27659 1.46837 1.48633 1.54846 1.75548 2.15357 2.41831 2.72154 2.79959 3.14110 3.72932 3.83539 4.02766 4.29142 4.71331 4.86851 4.89045 5.01241 5.09691 5.24428 5.46992 5.65577 5.86150 5.99380 6.12431 6.19329 6.69349 6.78884 7.08242 7.40462 8.86967 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.041514 B = 0.004787 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.304231 B = 5848.024922 C = 6270.061530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.277 3.723 3 H 0.035 0.965 4 C -0.552 4.552 5 H 0.060 0.940 6 C 0.029 3.971 7 N -0.906 5.906 8 Si 0.957 3.043 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.274 1.274 12 N -0.695 5.695 13 C 0.411 3.589 14 C -0.199 4.199 15 C -0.005 4.005 16 C -0.112 4.112 17 Cl -0.046 7.046 18 C 0.239 3.761 19 C 0.284 3.716 20 N -0.409 5.409 21 N -0.537 5.537 22 H 0.073 0.927 23 H 0.036 0.964 24 H 0.027 0.973 25 H 0.267 0.733 26 H 0.399 0.601 27 H 0.155 0.845 28 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.091 4.844 -9.468 10.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.174 3.826 3 H 0.053 0.947 4 C -0.590 4.590 5 H 0.078 0.922 6 C -0.173 4.173 7 N -0.544 5.544 8 Si 0.783 3.217 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.199 1.199 12 N -0.321 5.321 13 C 0.170 3.830 14 C -0.226 4.226 15 C -0.030 4.030 16 C -0.149 4.149 17 Cl -0.018 7.018 18 C 0.099 3.901 19 C -0.034 4.034 20 N -0.086 5.086 21 N -0.258 5.258 22 H 0.092 0.908 23 H 0.055 0.945 24 H 0.046 0.954 25 H 0.077 0.923 26 H 0.234 0.766 27 H 0.173 0.827 28 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 0.730 3.368 -10.537 11.086 hybrid contribution 0.023 0.087 1.215 1.218 sum 0.753 3.455 -9.322 9.970 Atomic orbital electron populations 1.22060 0.97754 0.99648 1.00852 1.18648 0.91209 0.92744 0.80010 0.94696 1.21448 1.32660 1.13674 0.91230 0.92216 1.25481 0.94859 0.95558 1.01360 1.69928 1.36420 1.23249 1.24781 0.85619 0.78626 0.78699 0.78739 1.20023 1.20848 1.19914 1.45407 1.67431 1.13046 1.06215 1.18605 0.89140 0.89540 0.85700 1.21958 1.06848 0.93174 1.00580 1.21498 0.91704 1.01709 0.88127 1.21378 1.11128 0.91994 0.90409 1.98368 1.96375 1.78519 1.28525 1.15753 0.98794 0.88196 0.87316 1.24987 0.93538 0.92612 0.92218 1.81167 1.08232 1.07883 1.11290 1.67034 1.21800 1.38879 0.98097 0.90827 0.94520 0.95384 0.92333 0.76588 0.82722 0.79500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.96 9.18 71.98 0.66 -5.30 15 2 C 0.28 11.80 2.24 44.24 0.10 11.90 15 3 H 0.04 1.58 6.44 -2.39 -0.02 1.56 15 4 C -0.55 -26.63 8.73 25.60 0.22 -26.41 15 5 H 0.06 2.86 7.74 -2.91 -0.02 2.84 15 6 C 0.03 1.41 5.30 84.65 0.45 1.86 15 7 N -0.91 -45.69 11.32 21.45 0.24 -45.45 15 8 Si 0.96 39.55 29.54 68.60 2.03 41.58 15 9 H -0.27 -11.27 7.11 99.48 0.71 -10.56 15 10 H -0.28 -11.53 7.11 99.48 0.71 -10.82 15 11 H -0.27 -11.18 7.11 99.48 0.71 -10.47 15 12 N -0.70 -25.99 5.24 -328.06 -1.72 -27.71 15 13 C 0.41 13.74 7.63 133.22 1.02 14.76 15 14 C -0.20 -5.61 8.83 22.57 0.20 -5.41 15 15 C -0.01 -0.11 9.96 22.44 0.22 0.11 15 16 C -0.11 -2.76 6.36 22.69 0.14 -2.61 15 17 Cl -0.05 -1.00 28.03 -2.72 -0.08 -1.08 15 18 C 0.24 7.02 6.58 40.49 0.27 7.29 15 19 C 0.28 8.56 14.57 88.33 1.29 9.84 15 20 N -0.41 -13.02 18.54 19.00 0.35 -12.67 15 21 N -0.54 -17.81 10.31 -186.51 -1.92 -19.74 15 22 H 0.07 3.39 6.07 -2.39 -0.01 3.37 15 23 H 0.04 1.32 7.65 -2.39 -0.02 1.30 15 24 H 0.03 1.15 8.14 -2.39 -0.02 1.13 15 25 H 0.27 12.95 8.31 -92.71 -0.77 12.18 15 26 H 0.40 14.81 8.66 -92.71 -0.80 14.01 15 27 H 0.16 4.43 6.05 -2.91 -0.02 4.42 15 28 H 0.19 2.70 8.06 -2.91 -0.02 2.68 15 Total: -1.00 -51.29 270.81 3.89 -47.40 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.42 Total: 11.63 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 4.57 Total: 6.03 kcal Atomic # 7 Polarization: -102.51 SS G_CDS: -3.05 Total: -105.56 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.08 Total: -1.08 kcal Total: -51.29 3.89 -47.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267229735.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.043 kcal (2) G-P(sol) polarization free energy of solvation -51.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds