Wall clock time and date at job start Sun Mar 29 2020 23:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 S 1.75515 * 124.65109 * 2 1 4 4 C 1.76062 * 91.53236 * 179.97438 * 3 2 1 5 5 N 1.34649 * 130.62162 * 179.97438 * 4 3 2 6 6 N 1.28239 * 122.14316 * 180.02562 * 5 4 3 7 7 N 1.39892 * 121.45246 * 0.02562 * 6 5 4 8 8 C 1.36908 * 120.07726 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99858 * 186.62193 * 8 7 6 10 10 C 1.39132 * 120.00096 * 6.34732 * 8 7 6 11 11 N 1.31202 * 120.00263 * 354.06963 * 10 8 7 12 12 Si 1.86804 * 120.00147 * 174.07305 * 10 8 7 13 13 H 1.48499 * 109.47193 * 94.98302 * 12 10 8 14 14 H 1.48501 * 109.46933 * 214.98705 * 12 10 8 15 15 H 1.48499 * 109.46868 * 334.98081 * 12 10 8 16 16 C 1.34796 * 119.84108 * 0.24920 * 7 6 5 17 17 O 1.21851 * 120.69306 * 179.73253 * 16 7 6 18 18 C 1.39362 * 109.26944 * 0.02562 * 4 3 2 19 19 C 1.32352 * 124.64802 * 179.97438 * 2 1 3 20 20 C 1.50700 * 122.13666 * 0.02562 * 19 2 1 21 21 H 1.09003 * 109.46615 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47124 * 120.01819 * 1 2 3 23 23 H 1.08994 * 109.47253 * 240.02388 * 1 2 3 24 24 H 0.96998 * 120.00094 * 180.02562 * 11 10 8 25 25 H 1.08999 * 109.47444 * 89.97286 * 20 19 2 26 26 H 1.09000 * 109.47337 * 209.97907 * 20 19 2 27 27 H 1.09003 * 109.47199 * 329.97402 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5050 1.4438 0.0000 4 6 3.9796 0.4819 0.0008 5 7 5.2722 0.8589 0.0007 6 7 6.2312 0.0075 0.0009 7 7 5.9848 -1.3695 0.0006 8 6 7.0302 -2.2536 0.0003 9 1 6.8425 -3.3117 -0.1078 10 6 8.3347 -1.7885 0.1334 11 7 8.5736 -0.4985 0.1423 12 14 9.7462 -3.0008 0.2994 13 1 10.3467 -3.2473 -1.0362 14 1 10.7765 -2.4392 1.2095 15 1 9.2373 -4.2796 0.8571 16 6 4.7157 -1.8238 -0.0049 17 8 4.4833 -3.0200 -0.0101 18 6 3.6460 -0.8712 0.0004 19 6 2.2595 -1.0888 0.0005 20 6 1.6655 -2.4738 0.0005 21 1 -0.3633 1.0277 -0.0005 22 1 -0.3633 -0.5141 -0.8898 23 1 -0.3633 -0.5134 0.8901 24 1 9.4831 -0.1742 0.2347 25 1 1.5222 -2.8078 -1.0271 26 1 2.3401 -3.1585 0.5144 27 1 0.7043 -2.4569 0.5144 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269375679.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:27 Heat of formation + Delta-G solvation = 55.799570 kcal Electronic energy + Delta-G solvation = -15985.734242 eV Core-core repulsion = 13257.678744 eV Total energy + Delta-G solvation = -2728.055498 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.047 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.12948 -36.99708 -36.46939 -34.59950 -32.18385 -30.80571 -28.82904 -26.89952 -25.84807 -23.78408 -22.30296 -19.67521 -18.64387 -17.40466 -16.55406 -15.93514 -15.51803 -15.11418 -14.47702 -13.72594 -13.62004 -13.00200 -12.50089 -12.36820 -12.27921 -12.23512 -11.91320 -11.81791 -11.70402 -11.55463 -11.03737 -10.83964 -10.55957 -10.17314 -9.97251 -9.25719 -9.02349 -8.78364 -7.75494 -7.37288 -7.28041 -4.74102 0.94735 2.11484 2.48998 2.67876 2.74836 2.81305 2.86794 2.90103 3.33374 3.80896 4.04935 4.75498 5.16823 5.44390 5.61393 5.66527 5.81575 5.89047 6.05201 6.19644 6.22411 6.37580 6.46336 6.56195 6.71992 7.02327 7.22151 7.29015 7.84386 8.05631 8.99965 9.56752 9.85257 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.040168 B = 0.007184 C = 0.006126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.897572 B = 3896.640865 C = 4569.508186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.234 4.234 3 S 0.098 5.902 4 C 0.026 3.974 5 N -0.307 5.307 6 N 0.030 4.970 7 N -0.224 5.224 8 C -0.189 4.189 9 H 0.146 0.854 10 C 0.016 3.984 11 N -0.702 5.702 12 Si 0.955 3.045 13 H -0.261 1.261 14 H -0.266 1.266 15 H -0.253 1.253 16 C 0.478 3.522 17 O -0.567 6.567 18 C -0.260 4.260 19 C -0.017 4.017 20 C -0.095 4.095 21 H 0.060 0.940 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.295 0.705 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.970 -0.439 0.162 4.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.350 4.350 3 S 0.353 5.647 4 C -0.226 4.226 5 N -0.174 5.174 6 N 0.052 4.948 7 N -0.024 5.024 8 C -0.339 4.339 9 H 0.163 0.837 10 C -0.206 4.206 11 N -0.331 5.331 12 Si 0.776 3.224 13 H -0.186 1.186 14 H -0.191 1.191 15 H -0.176 1.176 16 C 0.280 3.720 17 O -0.448 6.448 18 C -0.280 4.280 19 C -0.029 4.029 20 C -0.154 4.154 21 H 0.079 0.921 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.107 0.893 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.403 1.559 0.174 4.675 hybrid contribution 0.131 -2.406 0.046 2.410 sum -4.273 -0.846 0.220 4.361 Atomic orbital electron populations 1.20096 0.88356 1.01764 1.01911 1.23358 0.98942 0.95000 1.17737 1.83441 0.93143 1.07591 1.80554 1.24176 0.96677 0.94725 1.06989 1.72830 0.96288 1.26883 1.21431 1.81794 1.14070 0.81779 1.17167 1.48019 1.07125 1.08109 1.39192 1.21246 0.84079 0.92067 1.36512 0.83685 1.26205 1.00100 0.97827 0.96471 1.70182 1.24072 1.13419 1.25409 0.85420 0.77844 0.79393 0.79736 1.18590 1.19052 1.17632 1.17180 0.82499 0.89115 0.83241 1.90687 1.82879 1.15811 1.55467 1.18983 0.94531 0.92274 1.22181 1.18016 0.90505 0.95947 0.98392 1.20591 0.99850 0.93038 1.01963 0.92124 0.91536 0.91502 0.89340 0.91756 0.89981 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.84 9.35 36.01 0.34 -0.50 15 2 C -0.23 -4.30 6.42 -36.23 -0.23 -4.53 15 3 S 0.10 1.91 23.26 -107.50 -2.50 -0.59 15 4 C 0.03 0.64 7.78 -15.90 -0.12 0.51 15 5 N -0.31 -8.09 11.63 31.79 0.37 -7.72 15 6 N 0.03 0.82 10.16 60.35 0.61 1.44 15 7 N -0.22 -6.04 3.62 -13.10 -0.05 -6.09 15 8 C -0.19 -4.65 9.64 -14.95 -0.14 -4.79 15 9 H 0.15 3.39 7.22 -52.49 -0.38 3.01 15 10 C 0.02 0.36 5.49 -17.49 -0.10 0.27 15 11 N -0.70 -16.47 11.34 55.50 0.63 -15.84 15 12 Si 0.96 16.11 29.56 -169.99 -5.02 11.09 15 13 H -0.26 -4.30 7.11 56.52 0.40 -3.90 15 14 H -0.27 -4.36 7.11 56.52 0.40 -3.95 15 15 H -0.25 -4.21 7.11 56.52 0.40 -3.81 15 16 C 0.48 12.86 7.56 -14.31 -0.11 12.76 15 17 O -0.57 -15.46 14.50 5.05 0.07 -15.39 15 18 C -0.26 -6.49 5.89 -106.74 -0.63 -7.11 15 19 C -0.02 -0.36 5.81 -105.76 -0.61 -0.98 15 20 C -0.10 -1.75 9.35 36.01 0.34 -1.42 15 21 H 0.06 0.72 8.14 -51.93 -0.42 0.29 15 22 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.07 0.81 7.85 -51.93 -0.41 0.41 15 24 H 0.29 6.05 8.30 -40.82 -0.34 5.71 15 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 26 H 0.08 1.69 6.39 -51.93 -0.33 1.36 15 27 H 0.06 0.85 7.20 -51.93 -0.37 0.47 15 LS Contribution 254.04 15.07 3.83 3.83 Total: -1.00 -29.18 254.04 -5.23 -34.41 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -1.89 Total: 0.67 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -1.28 Total: -5.80 kcal Atomic # 7 Polarization: -29.78 SS G_CDS: 1.56 Total: -28.21 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: 0.07 Total: -15.39 kcal Atomic # 14 Polarization: 16.11 SS G_CDS: -5.02 Total: 11.09 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.50 Total: -0.59 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.18 -5.23 -34.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269375679.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.208 kcal (2) G-P(sol) polarization free energy of solvation -29.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds