Wall clock time and date at job start Sun Mar 29 2020 22:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28596 * 124.61855 * 2 1 4 4 C 1.31376 * 108.71715 * 179.97438 * 3 2 1 5 5 C 1.39668 * 105.90198 * 359.97438 * 4 3 2 6 6 C 1.50701 * 127.05270 * 179.97438 * 5 4 3 7 7 N 1.46902 * 109.47257 * 94.72224 * 6 5 4 8 8 C 1.46900 * 110.99826 * 199.58293 * 7 6 5 9 9 C 1.50701 * 109.46839 * 170.00189 * 8 7 6 10 10 H 1.08001 * 120.00134 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99882 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00032 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99739 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47527 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46954 * 120.00271 * 13 11 9 16 16 H 1.48499 * 109.47151 * 239.99813 * 13 11 9 17 17 C 1.46894 * 110.99719 * 75.63136 * 7 6 5 18 18 C 1.53003 * 109.47525 * 58.40019 * 17 7 6 19 19 C 1.52997 * 117.50031 * 244.02649 * 18 17 7 20 20 C 1.53002 * 117.50073 * 175.36393 * 18 17 7 21 21 N 1.28602 * 124.61938 * 180.24894 * 2 1 3 22 22 H 1.09003 * 109.47523 * 90.02785 * 1 2 3 23 23 H 1.09004 * 109.47149 * 210.02305 * 1 2 3 24 24 H 1.08991 * 109.47375 * 330.02469 * 1 2 3 25 25 H 1.08003 * 127.04501 * 180.02562 * 4 3 2 26 26 H 1.09005 * 109.46771 * 334.72586 * 6 5 4 27 27 H 1.09001 * 109.47338 * 214.72995 * 6 5 4 28 28 H 1.09005 * 109.47079 * 290.00113 * 8 7 6 29 29 H 1.08993 * 109.47751 * 50.00088 * 8 7 6 30 30 H 0.96993 * 120.00332 * 179.97438 * 12 11 9 31 31 H 1.08999 * 109.47396 * 298.40434 * 17 7 6 32 32 H 1.08999 * 109.47564 * 178.40314 * 17 7 6 33 33 H 1.09000 * 115.54554 * 29.69961 * 18 17 7 34 34 H 1.08995 * 117.49821 * 359.97438 * 19 18 17 35 35 H 1.09001 * 117.49538 * 145.02097 * 19 18 17 36 36 H 1.08995 * 117.49872 * 214.98342 * 20 18 17 37 37 H 1.09003 * 117.49593 * 0.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4591 0.6983 0.0006 5 6 3.4591 -0.6983 0.0015 6 6 4.6618 -1.6064 0.0019 7 7 4.9842 -1.9915 1.3824 8 6 6.3693 -2.4699 1.4856 9 6 6.7414 -2.6214 2.9381 10 1 6.0209 -2.3863 3.7075 11 6 8.0014 -3.0613 3.2847 12 7 8.8786 -3.3480 2.3477 13 14 8.4629 -3.2484 5.0850 14 1 7.3074 -2.8639 5.9348 15 1 8.8289 -4.6616 5.3579 16 1 9.6192 -2.3692 5.3937 17 6 4.0403 -3.0003 1.8815 18 6 4.0804 -4.2304 0.9726 19 6 2.8069 -4.5799 0.2001 20 6 3.2437 -5.4425 1.3868 21 7 2.1956 -1.0583 -0.0046 22 1 -0.3634 -0.0005 -1.0277 23 1 -0.3634 -0.8898 0.5142 24 1 -0.3633 0.8901 0.5134 25 1 4.3210 1.3491 0.0011 26 1 5.5116 -1.0839 -0.4374 27 1 4.4428 -2.4998 -0.5829 28 1 6.4590 -3.4340 0.9850 29 1 7.0382 -1.7512 1.0123 30 1 9.7651 -3.6571 2.5915 31 1 3.0327 -2.5845 1.8857 32 1 4.3186 -3.2883 2.8952 33 1 5.0350 -4.4216 0.4823 34 1 1.9403 -3.9337 0.3397 35 1 2.9236 -5.0014 -0.7983 36 1 3.6475 -6.4311 1.1686 37 1 2.6642 -5.3634 2.3066 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289916848.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:16 Heat of formation + Delta-G solvation = 143.552732 kcal Electronic energy + Delta-G solvation = -18524.113198 eV Core-core repulsion = 15726.494942 eV Total energy + Delta-G solvation = -2797.618255 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.19996 -38.05328 -35.24049 -33.59304 -32.51766 -31.96139 -28.81901 -27.11060 -26.19996 -23.96582 -21.97170 -21.92706 -21.60054 -20.63351 -18.99460 -16.98750 -16.59900 -16.23935 -15.43233 -14.86346 -14.50574 -14.33052 -13.87545 -13.62915 -13.30009 -12.95623 -12.83479 -12.11930 -11.72422 -11.62477 -11.24044 -11.13585 -10.97102 -10.73002 -10.64658 -10.48213 -10.46245 -10.02816 -9.88685 -9.73602 -9.31215 -9.15061 -8.80332 -8.40070 -7.18608 -5.99780 -3.99768 2.09316 2.55574 2.79594 3.33364 3.40993 3.46060 4.30975 4.34833 4.46916 4.94143 5.00959 5.18066 5.19264 5.25201 5.28433 5.36639 5.47110 5.58499 5.66294 5.95897 6.02287 6.05736 6.20839 6.30956 6.41015 6.50199 6.54311 6.55442 6.60891 6.93118 7.00484 7.31426 7.41047 7.83487 8.10416 8.23546 8.57140 8.64674 9.07464 9.63916 11.11096 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.023188 B = 0.006119 C = 0.005367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.213422 B = 4575.142957 C = 5215.395548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.172 5.172 3 N -0.302 5.302 4 C -0.013 4.013 5 C 0.034 3.966 6 C 0.134 3.866 7 N -0.526 5.526 8 C 0.191 3.809 9 C -0.501 4.501 10 H 0.062 0.938 11 C 0.056 3.944 12 N -0.899 5.899 13 Si 0.895 3.105 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.285 1.285 17 C 0.097 3.903 18 C -0.169 4.169 19 C -0.181 4.181 20 C -0.182 4.182 21 N -0.286 5.286 22 H 0.082 0.918 23 H 0.098 0.902 24 H 0.097 0.903 25 H 0.195 0.805 26 H 0.087 0.913 27 H 0.051 0.949 28 H -0.001 1.001 29 H 0.031 0.969 30 H 0.260 0.740 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.295 2.990 -5.791 15.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.072 5.072 3 N -0.144 5.144 4 C -0.196 4.196 5 C -0.130 4.130 6 C 0.003 3.997 7 N -0.250 5.250 8 C 0.066 3.934 9 C -0.540 4.540 10 H 0.080 0.920 11 C -0.145 4.145 12 N -0.539 5.539 13 Si 0.723 3.277 14 H -0.197 1.197 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.032 4.032 18 C -0.188 4.188 19 C -0.218 4.218 20 C -0.220 4.220 21 N -0.129 5.129 22 H 0.101 0.899 23 H 0.116 0.884 24 H 0.115 0.885 25 H 0.211 0.789 26 H 0.105 0.895 27 H 0.069 0.931 28 H 0.017 0.983 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.124 0.876 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.567 3.381 -5.518 16.859 hybrid contribution 1.358 -0.869 0.445 1.672 sum -14.209 2.512 -5.074 15.295 Atomic orbital electron populations 1.21952 0.71162 1.05340 1.04227 1.47806 1.08436 0.99729 1.51201 1.73962 1.04148 1.16226 1.20036 1.24605 0.94031 0.95152 1.05818 1.23291 0.92308 0.94133 1.03224 1.20314 0.90993 0.95695 0.92652 1.62261 1.05798 1.40118 1.16781 1.19808 0.81677 0.94240 0.97681 1.21161 0.97833 1.43135 0.91870 0.91953 1.24946 0.96440 0.95683 0.97418 1.69956 1.05689 1.46075 1.32163 0.86488 0.78429 0.77517 0.85266 1.19738 1.21198 1.21073 1.21673 0.95639 0.87657 0.98184 1.23093 0.95247 0.97702 1.02803 1.22965 0.99485 1.03804 0.95506 1.22816 1.04768 0.95534 0.98839 1.74024 1.03897 1.15060 1.19908 0.89912 0.88374 0.88452 0.78852 0.89489 0.93077 0.98283 0.95088 0.93056 0.92458 0.89894 0.87614 0.88877 0.90091 0.89641 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.98 11.57 59.85 0.69 1.67 16 2 N -0.17 -2.47 4.35 -16.64 -0.07 -2.55 16 3 N -0.30 -4.71 12.05 30.67 0.37 -4.34 16 4 C -0.01 -0.21 12.16 -17.22 -0.21 -0.42 16 5 C 0.03 0.58 6.38 -82.26 -0.52 0.06 16 6 C 0.13 2.42 5.45 -4.97 -0.03 2.39 16 7 N -0.53 -11.16 4.62 -237.52 -1.10 -12.25 16 8 C 0.19 4.77 4.56 -4.98 -0.02 4.75 16 9 C -0.50 -13.81 8.44 -34.44 -0.29 -14.10 16 10 H 0.06 1.73 7.13 -52.49 -0.37 1.36 16 11 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 12 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 13 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 14 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 C 0.10 1.93 5.34 -3.83 -0.02 1.91 16 18 C -0.17 -3.07 3.94 -90.62 -0.36 -3.42 16 19 C -0.18 -2.77 9.99 -26.69 -0.27 -3.04 16 20 C -0.18 -2.87 10.26 -26.69 -0.27 -3.14 16 21 N -0.29 -4.68 11.44 33.71 0.39 -4.29 16 22 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.19 2.55 8.06 -52.48 -0.42 2.13 16 26 H 0.09 1.49 7.74 -51.93 -0.40 1.09 16 27 H 0.05 0.92 6.39 -51.93 -0.33 0.59 16 28 H 0.00 -0.01 6.14 -51.93 -0.32 -0.33 16 29 H 0.03 0.82 7.83 -51.93 -0.41 0.42 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.06 1.11 6.90 -51.93 -0.36 0.75 16 32 H 0.08 1.82 6.72 -51.93 -0.35 1.47 16 33 H 0.11 2.15 6.29 -51.93 -0.33 1.82 16 34 H 0.09 1.42 8.03 -51.93 -0.42 1.01 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 308.52 15.07 4.65 4.65 Total: -1.00 -31.43 308.52 -6.83 -38.26 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -5.38 Total: 1.34 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -1.40 Total: -11.86 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.32 Total: -48.96 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.43 -6.83 -38.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289916848.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.811 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds