Wall clock time and date at job start Sun Mar 29 2020 22:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28602 * 124.61714 * 2 1 4 4 C 1.31380 * 108.71916 * 180.02562 * 3 2 1 5 5 C 1.39679 * 105.89952 * 359.97438 * 4 3 2 6 6 C 1.50697 * 127.05081 * 179.97438 * 5 4 3 7 7 N 1.46506 * 109.46802 * 96.65330 * 6 5 4 8 8 C 1.36938 * 119.99807 * 95.74139 * 7 6 5 9 9 H 1.07998 * 120.00187 * 214.86732 * 8 7 6 10 10 C 1.38817 * 119.99863 * 34.87211 * 8 7 6 11 11 N 1.31622 * 119.99563 * 212.77655 * 10 8 7 12 12 Si 1.86802 * 120.00066 * 32.77435 * 10 8 7 13 13 H 1.48492 * 109.47045 * 95.48349 * 12 10 8 14 14 H 1.48502 * 109.46999 * 215.48365 * 12 10 8 15 15 H 1.48497 * 109.47173 * 335.48174 * 12 10 8 16 16 C 1.46495 * 120.00160 * 275.73881 * 7 6 5 17 17 C 1.54267 * 110.03469 * 237.91061 * 16 7 6 18 18 C 1.54965 * 104.16013 * 217.13619 * 17 16 7 19 19 C 1.54895 * 102.77829 * 37.88792 * 18 17 16 20 20 C 1.53882 * 110.03126 * 120.69262 * 16 7 6 21 21 N 1.28598 * 124.62070 * 180.32677 * 2 1 3 22 22 H 1.08995 * 109.47454 * 89.97533 * 1 2 3 23 23 H 1.09003 * 109.46754 * 209.97919 * 1 2 3 24 24 H 1.09000 * 109.46764 * 329.97645 * 1 2 3 25 25 H 1.08002 * 127.04875 * 179.97438 * 4 3 2 26 26 H 1.08997 * 109.47548 * 216.65059 * 6 5 4 27 27 H 1.09004 * 109.47385 * 336.65798 * 6 5 4 28 28 H 0.97000 * 119.99341 * 180.02562 * 11 10 8 29 29 H 1.09002 * 110.01637 * 359.30325 * 16 7 6 30 30 H 1.08997 * 110.48379 * 335.78599 * 17 16 7 31 31 H 1.08999 * 110.48441 * 98.42819 * 17 16 7 32 32 H 1.08997 * 110.72570 * 279.57662 * 18 17 16 33 33 H 1.09003 * 110.92331 * 156.29247 * 18 17 16 34 34 H 1.08995 * 110.49063 * 203.40309 * 19 18 17 35 35 H 1.09004 * 110.59906 * 80.81321 * 19 18 17 36 36 H 1.08999 * 110.03250 * 238.57387 * 20 16 7 37 37 H 1.09003 * 110.02901 * 0.02562 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0584 0.0000 4 6 3.4591 0.6985 -0.0006 5 6 3.4592 -0.6983 -0.0003 6 6 4.6619 -1.6063 -0.0013 7 7 4.9565 -2.0279 1.3705 8 6 4.4798 -3.2242 1.8363 9 1 4.1797 -3.3205 2.8693 10 6 4.3826 -4.3131 0.9808 11 7 3.4163 -5.1922 1.1419 12 14 5.6230 -4.5307 -0.3988 13 1 6.7063 -5.4423 0.0488 14 1 4.9460 -5.1117 -1.5860 15 1 6.2026 -3.2110 -0.7561 16 6 5.7609 -1.1699 2.2438 17 6 7.0067 -1.9357 2.7353 18 6 7.1943 -1.4562 4.1969 19 6 5.7371 -1.3385 4.7086 20 6 4.9541 -0.7899 3.4979 21 7 2.1956 -1.0583 -0.0060 22 1 -0.3634 0.0004 -1.0276 23 1 -0.3633 -0.8902 0.5135 24 1 -0.3633 0.8898 0.5142 25 1 4.3211 1.3492 -0.0011 26 1 4.4546 -2.4833 -0.6143 27 1 5.5201 -1.0722 -0.4094 28 1 3.3486 -5.9532 0.5443 29 1 6.0631 -0.2704 1.7075 30 1 6.8295 -3.0108 2.7064 31 1 7.8769 -1.6752 2.1328 32 1 7.6926 -0.4871 4.2239 33 1 7.7501 -2.1911 4.7793 34 1 5.6817 -0.6427 5.5458 35 1 5.3529 -2.3160 5.0001 36 1 4.8655 0.2940 3.5706 37 1 3.9642 -1.2444 3.4568 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290023645.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:17 Heat of formation + Delta-G solvation = 132.529557 kcal Electronic energy + Delta-G solvation = -19130.252957 eV Core-core repulsion = 16332.156700 eV Total energy + Delta-G solvation = -2798.096256 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.81277 -37.87318 -34.77765 -33.04136 -31.81652 -31.24863 -28.35249 -27.90919 -26.83946 -25.32508 -22.65332 -21.56027 -20.37222 -19.94801 -18.94444 -16.86149 -16.39358 -16.05853 -15.35851 -15.04484 -14.40420 -14.20533 -13.47632 -13.39022 -12.85236 -12.67364 -12.56999 -12.52475 -12.24652 -11.42081 -10.99887 -10.79953 -10.62632 -10.45697 -10.42587 -10.34045 -10.03464 -9.97150 -9.94786 -9.68719 -9.63673 -9.37653 -8.47916 -8.37515 -6.82722 -5.99064 -3.25788 2.46235 2.91144 3.13683 3.41800 3.53433 3.56669 4.60633 4.67676 5.03798 5.24384 5.27355 5.33283 5.39337 5.46812 5.50809 5.61968 5.69305 5.93474 6.06842 6.20230 6.22288 6.26472 6.38775 6.45317 6.53492 6.56391 6.68498 6.76899 6.86436 6.89095 6.95544 7.17548 7.21463 7.34073 8.08041 8.46786 9.03145 9.06556 9.79781 10.19427 11.16631 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.016149 B = 0.010337 C = 0.007574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.429908 B = 2708.110956 C = 3695.816577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.175 5.175 3 N -0.309 5.309 4 C -0.035 4.035 5 C 0.008 3.992 6 C 0.225 3.775 7 N -0.583 5.583 8 C -0.264 4.264 9 H 0.076 0.924 10 C 0.049 3.951 11 N -0.877 5.877 12 Si 0.844 3.156 13 H -0.292 1.292 14 H -0.295 1.295 15 H -0.260 1.260 16 C 0.174 3.826 17 C -0.135 4.135 18 C -0.121 4.121 19 C -0.117 4.117 20 C -0.132 4.132 21 N -0.264 5.264 22 H 0.080 0.920 23 H 0.099 0.901 24 H 0.093 0.907 25 H 0.186 0.814 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.261 0.739 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.043 0.957 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.862 10.411 -0.100 10.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.075 5.075 3 N -0.151 5.151 4 C -0.218 4.218 5 C -0.159 4.159 6 C 0.097 3.903 7 N -0.303 5.303 8 C -0.392 4.392 9 H 0.094 0.906 10 C -0.153 4.153 11 N -0.516 5.516 12 Si 0.671 3.329 13 H -0.219 1.219 14 H -0.222 1.222 15 H -0.185 1.185 16 C 0.067 3.933 17 C -0.174 4.174 18 C -0.159 4.159 19 C -0.155 4.155 20 C -0.171 4.171 21 N -0.105 5.105 22 H 0.098 0.902 23 H 0.118 0.882 24 H 0.111 0.889 25 H 0.203 0.797 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.670 10.239 -0.154 10.262 hybrid contribution 1.407 -0.214 -0.715 1.592 sum 0.737 10.025 -0.869 10.090 Atomic orbital electron populations 1.21905 0.71579 1.05168 1.03967 1.47975 1.08397 0.99865 1.51278 1.73832 1.04153 1.16771 1.20358 1.24496 0.93971 0.95315 1.08039 1.24845 0.94112 0.94068 1.02854 1.19749 0.88195 0.94044 0.88353 1.44224 1.57200 1.19134 1.09716 1.18452 1.37533 0.85430 0.97814 0.90616 1.25347 0.96829 0.96023 0.97095 1.70068 1.27808 1.14793 1.38909 0.87428 0.84366 0.78428 0.82713 1.21947 1.22204 1.18488 1.21045 0.89545 0.92054 0.90674 1.22816 0.97485 1.02982 0.94103 1.22416 0.96487 0.99760 0.97267 1.22250 0.95531 1.00610 0.97128 1.22549 1.00799 0.98371 0.95390 1.74308 1.04033 1.13957 1.18245 0.90157 0.88227 0.88865 0.79719 0.91087 0.92266 0.92894 0.92874 0.89629 0.93311 0.92724 0.92653 0.93389 0.91768 0.93837 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.44 11.57 59.85 0.69 2.14 16 2 N -0.18 -3.24 4.35 -16.64 -0.07 -3.31 16 3 N -0.31 -5.67 12.05 30.68 0.37 -5.30 16 4 C -0.04 -0.63 12.16 -17.21 -0.21 -0.84 16 5 C 0.01 0.16 6.93 -82.25 -0.57 -0.41 16 6 C 0.23 4.88 4.36 -5.19 -0.02 4.85 16 7 N -0.58 -13.24 2.03 -165.74 -0.34 -13.58 16 8 C -0.26 -7.06 7.98 -15.06 -0.12 -7.18 16 9 H 0.08 2.23 7.38 -52.49 -0.39 1.84 16 10 C 0.05 1.37 5.05 -17.43 -0.09 1.28 16 11 N -0.88 -26.30 13.97 55.49 0.78 -25.52 16 12 Si 0.84 20.97 26.20 -169.99 -4.45 16.52 16 13 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 14 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 15 H -0.26 -6.00 5.72 56.52 0.32 -5.68 16 16 C 0.17 3.35 3.42 -66.81 -0.23 3.12 16 17 C -0.13 -2.45 6.42 -25.03 -0.16 -2.61 16 18 C -0.12 -1.89 6.91 -24.69 -0.17 -2.06 16 19 C -0.12 -1.96 6.83 -25.07 -0.17 -2.13 16 20 C -0.13 -2.46 6.16 -25.61 -0.16 -2.62 16 21 N -0.26 -5.83 12.05 33.71 0.41 -5.42 16 22 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.19 2.64 8.06 -52.49 -0.42 2.22 16 26 H 0.07 1.70 4.29 -51.93 -0.22 1.47 16 27 H 0.06 1.11 8.03 -51.93 -0.42 0.69 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.05 0.93 7.90 -51.93 -0.41 0.52 16 30 H 0.09 1.81 7.03 -51.93 -0.37 1.45 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.60 7.04 -51.93 -0.37 1.24 16 LS Contribution 299.66 15.07 4.52 4.52 Total: -1.00 -32.01 299.66 -5.61 -37.62 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.61 Total: 0.93 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -1.21 Total: -6.45 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 1.14 Total: -53.14 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.45 Total: 16.52 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.01 -5.61 -37.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290023645.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.150 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds