Wall clock time and date at job start Sun Mar 29 2020 23:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46494 * 120.00149 * 2 1 4 4 C 1.50703 * 109.47531 * 270.00921 * 3 2 1 5 5 H 1.07994 * 119.99492 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00154 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99977 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00116 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47227 * 90.00236 * 8 6 4 10 10 H 1.48498 * 109.47237 * 210.00132 * 8 6 4 11 11 H 1.48507 * 109.46779 * 330.00185 * 8 6 4 12 12 C 1.34778 * 119.99768 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99686 * 179.97438 * 12 2 1 14 14 C 1.50692 * 120.00351 * 359.97438 * 12 2 1 15 15 H 1.09008 * 115.54779 * 325.66812 * 14 12 2 16 16 C 1.53000 * 117.50104 * 180.02562 * 14 12 2 17 17 C 1.53002 * 60.02940 * 252.47218 * 16 14 12 18 18 Cl 1.80300 * 117.49870 * 107.50516 * 17 16 14 19 19 Cl 1.80308 * 117.49539 * 252.51959 * 17 16 14 20 20 H 1.09005 * 109.46724 * 269.99059 * 1 2 3 21 21 H 1.08998 * 109.47583 * 29.99058 * 1 2 3 22 22 H 1.08993 * 109.47416 * 149.99833 * 1 2 3 23 23 H 1.09003 * 109.47161 * 30.00465 * 3 2 1 24 24 H 1.08995 * 109.47528 * 150.00055 * 3 2 1 25 25 H 0.97004 * 120.00390 * 180.02562 * 7 6 4 26 26 H 1.09002 * 117.49833 * 359.97323 * 16 14 12 27 27 H 1.09002 * 117.49953 * 144.97364 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0979 1.0960 -2.2416 6 6 3.1258 2.8781 -1.6727 7 7 3.5533 3.6181 -0.6730 8 14 3.4376 3.4172 -3.4338 9 1 2.3075 4.2596 -3.9011 10 1 4.6976 4.2007 -3.4960 11 1 3.5557 2.2199 -4.3044 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 1 0.4472 -2.4735 0.5545 16 6 2.2075 -3.7627 -0.0005 17 6 1.4601 -3.3325 -1.2644 18 17 2.4430 -2.7074 -2.6406 19 17 -0.0107 -4.2700 -1.7215 20 1 -0.3633 -0.0002 1.0277 21 1 -0.3634 0.8900 -0.5137 22 1 -0.3634 -0.8899 -0.5138 23 1 1.6085 2.0283 0.5139 24 1 3.1499 1.1384 0.5138 25 1 4.0295 4.4444 -0.8502 26 1 3.2933 -3.6676 -0.0010 27 1 1.8101 -4.6126 0.5544 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299250556.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:50 Heat of formation + Delta-G solvation = -18.491806 kcal Electronic energy + Delta-G solvation = -14517.137771 eV Core-core repulsion = 11749.091450 eV Total energy + Delta-G solvation = -2768.046321 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 251.022 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.54173 -37.09381 -35.96524 -35.18283 -34.67223 -32.57614 -28.10098 -26.05004 -24.42173 -22.28935 -21.88440 -18.59509 -17.23550 -16.52205 -15.83927 -15.32340 -14.60905 -14.31037 -13.87475 -13.04696 -12.78468 -12.44361 -12.19616 -12.15933 -11.82801 -11.75739 -11.21209 -11.15453 -10.90873 -10.81702 -10.62518 -10.45690 -10.16290 -9.86784 -9.63485 -9.08791 -8.43679 -7.70842 -6.04751 -4.08912 1.13590 2.18579 2.71850 3.30688 3.37378 3.42094 3.58628 3.81071 4.27020 4.41304 4.46688 4.97558 5.14525 5.30147 5.43158 5.63486 5.79252 5.88038 6.19452 6.98526 7.39069 7.48028 7.91688 8.21678 8.30933 8.84688 9.00529 9.56082 11.03498 Molecular weight = 251.02amu Principal moments of inertia in cm(-1) A = 0.028683 B = 0.007141 C = 0.006576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.967243 B = 3920.126876 C = 4257.160824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.591 5.591 3 C 0.246 3.754 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.532 3.468 13 O -0.523 6.523 14 C -0.155 4.155 15 H 0.140 0.860 16 C -0.116 4.116 17 C 0.017 3.983 18 Cl -0.067 7.067 19 Cl -0.101 7.101 20 H 0.046 0.954 21 H 0.077 0.923 22 H 0.057 0.943 23 H 0.034 0.966 24 H 0.045 0.955 25 H 0.263 0.737 26 H 0.133 0.867 27 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.803 -13.963 1.375 16.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.323 5.323 3 C 0.127 3.873 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.317 3.683 13 O -0.400 6.400 14 C -0.177 4.177 15 H 0.157 0.843 16 C -0.154 4.154 17 C -0.035 4.035 18 Cl -0.040 7.040 19 Cl -0.074 7.074 20 H 0.065 0.935 21 H 0.096 0.904 22 H 0.076 0.924 23 H 0.052 0.948 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.151 0.849 27 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.097 -13.764 1.265 15.537 hybrid contribution -0.137 0.404 -1.177 1.251 sum -7.234 -13.361 0.088 15.194 Atomic orbital electron populations 1.21686 0.81257 1.02865 1.00508 1.48041 1.06306 1.07457 1.70448 1.19344 0.92523 0.77673 0.97728 1.21415 1.36437 1.06195 0.92201 0.92304 1.24912 0.95343 0.96395 0.97357 1.69929 1.38503 1.14333 1.30701 0.86522 0.77689 0.78630 0.84778 1.20611 1.21085 1.19868 1.18971 0.87376 0.83609 0.78378 1.90695 1.13170 1.86521 1.49585 1.23415 1.03299 0.93568 0.97466 0.84272 1.23903 1.01910 0.96579 0.92997 1.26495 0.89952 1.01697 0.85389 1.98802 1.69923 1.87065 1.48170 1.98735 1.40299 1.74504 1.93878 0.93519 0.90431 0.92438 0.94798 0.93698 0.92724 0.84911 0.85816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.26 10.01 59.85 0.60 1.86 15 2 N -0.59 -12.30 2.86 -182.96 -0.52 -12.83 15 3 C 0.25 6.34 5.16 -5.20 -0.03 6.31 15 4 C -0.52 -14.77 9.39 -34.44 -0.32 -15.09 15 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 15 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 7 N -0.90 -26.51 13.29 55.43 0.74 -25.77 15 8 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 15 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 11 H -0.27 -6.77 7.11 56.52 0.40 -6.37 15 12 C 0.53 10.67 6.55 -10.99 -0.07 10.60 15 13 O -0.52 -12.53 15.67 5.56 0.09 -12.45 15 14 C -0.16 -2.23 4.64 -91.74 -0.43 -2.65 15 15 H 0.14 1.59 7.26 -51.92 -0.38 1.21 15 16 C -0.12 -1.41 9.72 -26.73 -0.26 -1.67 15 17 C 0.02 0.24 3.62 -26.69 -0.10 0.14 15 18 Cl -0.07 -1.15 28.19 -51.86 -1.46 -2.62 15 19 Cl -0.10 -1.21 29.29 -51.86 -1.52 -2.73 15 20 H 0.05 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.08 1.26 8.07 -51.93 -0.42 0.84 15 22 H 0.06 0.77 6.64 -51.93 -0.34 0.42 15 23 H 0.03 0.88 8.07 -51.93 -0.42 0.46 15 24 H 0.04 1.30 7.42 -51.93 -0.39 0.91 15 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 26 H 0.13 1.78 7.67 -51.93 -0.40 1.38 15 27 H 0.12 1.07 8.14 -51.93 -0.42 0.65 15 LS Contribution 272.24 15.07 4.10 4.10 Total: -1.00 -31.89 272.24 -7.03 -38.93 By element: Atomic # 1 Polarization: -2.10 SS G_CDS: -2.73 Total: -4.83 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -0.70 Total: 1.18 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.21 Total: -38.60 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 17 Polarization: -2.37 SS G_CDS: -2.98 Total: -5.35 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.89 -7.03 -38.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299250556.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.437 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds