Wall clock time and date at job start Sun Mar 29 2020 23:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46494 * 120.00149 * 2 1 4 4 C 1.50703 * 109.47531 * 270.00921 * 3 2 1 5 5 H 1.07994 * 119.99492 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00154 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99977 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00116 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47227 * 90.00236 * 8 6 4 10 10 H 1.48498 * 109.47237 * 210.00132 * 8 6 4 11 11 H 1.48507 * 109.46779 * 330.00185 * 8 6 4 12 12 C 1.34778 * 119.99768 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99686 * 179.97438 * 12 2 1 14 14 C 1.50692 * 120.00351 * 359.97438 * 12 2 1 15 15 H 1.09008 * 115.54779 * 325.66812 * 14 12 2 16 16 C 1.53000 * 117.50104 * 180.02562 * 14 12 2 17 17 C 1.53002 * 60.02940 * 252.47218 * 16 14 12 18 18 Cl 1.80300 * 117.49870 * 107.50516 * 17 16 14 19 19 Cl 1.80308 * 117.49539 * 252.51959 * 17 16 14 20 20 H 1.09005 * 109.46724 * 269.99059 * 1 2 3 21 21 H 1.08998 * 109.47583 * 29.99058 * 1 2 3 22 22 H 1.08993 * 109.47416 * 149.99833 * 1 2 3 23 23 H 1.09003 * 109.47161 * 30.00465 * 3 2 1 24 24 H 1.08995 * 109.47528 * 150.00055 * 3 2 1 25 25 H 0.97004 * 120.00390 * 180.02562 * 7 6 4 26 26 H 1.09002 * 117.49833 * 359.97323 * 16 14 12 27 27 H 1.09002 * 117.49953 * 144.97364 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0979 1.0960 -2.2416 6 6 3.1258 2.8781 -1.6727 7 7 3.5533 3.6181 -0.6730 8 14 3.4376 3.4172 -3.4338 9 1 2.3075 4.2596 -3.9011 10 1 4.6976 4.2007 -3.4960 11 1 3.5557 2.2199 -4.3044 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 1 0.4472 -2.4735 0.5545 16 6 2.2075 -3.7627 -0.0005 17 6 1.4601 -3.3325 -1.2644 18 17 2.4430 -2.7074 -2.6406 19 17 -0.0107 -4.2700 -1.7215 20 1 -0.3633 -0.0002 1.0277 21 1 -0.3634 0.8900 -0.5137 22 1 -0.3634 -0.8899 -0.5138 23 1 1.6085 2.0283 0.5139 24 1 3.1499 1.1384 0.5138 25 1 4.0295 4.4444 -0.8502 26 1 3.2933 -3.6676 -0.0010 27 1 1.8101 -4.6126 0.5544 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299250556.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:50 Heat of formation + Delta-G solvation = -38.775422 kcal Electronic energy + Delta-G solvation = -14518.017334 eV Core-core repulsion = 11749.091450 eV Total energy + Delta-G solvation = -2768.925885 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 251.022 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.01082 -38.33296 -37.09130 -36.69282 -36.04351 -34.67988 -30.04318 -27.46977 -26.17410 -23.60725 -23.30648 -20.02388 -18.67389 -18.59731 -17.29907 -16.82880 -16.39491 -15.84345 -15.40128 -14.40364 -14.25308 -13.99414 -13.68787 -13.48052 -13.25931 -13.13933 -12.93250 -12.79530 -12.52266 -12.27746 -12.21075 -11.94748 -11.71881 -11.62471 -11.03969 -10.66358 -10.63385 -9.43667 -8.22371 -6.35501 0.03627 1.04478 1.34650 1.37373 1.41821 1.48291 2.21419 2.41070 2.46258 3.07658 3.09049 3.31501 3.64070 4.14879 4.39653 4.57056 4.70419 4.78239 4.95313 5.02048 5.23520 5.55819 5.81931 6.06608 6.67301 6.75565 7.26715 7.41939 8.84701 Molecular weight = 251.02amu Principal moments of inertia in cm(-1) A = 0.028683 B = 0.007141 C = 0.006576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.967243 B = 3920.126876 C = 4257.160824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.601 5.601 3 C 0.261 3.739 4 C -0.536 4.536 5 H 0.050 0.950 6 C 0.011 3.989 7 N -0.927 5.927 8 Si 0.960 3.040 9 H -0.263 1.263 10 H -0.280 1.280 11 H -0.277 1.277 12 C 0.524 3.476 13 O -0.574 6.574 14 C -0.156 4.156 15 H 0.178 0.822 16 C -0.094 4.094 17 C 0.013 3.987 18 Cl -0.106 7.106 19 Cl -0.074 7.074 20 H 0.079 0.921 21 H 0.067 0.933 22 H 0.085 0.915 23 H 0.027 0.973 24 H 0.002 0.998 25 H 0.267 0.733 26 H 0.117 0.883 27 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.585 -15.447 1.177 18.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.332 5.332 3 C 0.140 3.860 4 C -0.575 4.575 5 H 0.068 0.932 6 C -0.188 4.188 7 N -0.567 5.567 8 Si 0.785 3.215 9 H -0.188 1.188 10 H -0.205 1.205 11 H -0.202 1.202 12 C 0.311 3.689 13 O -0.454 6.454 14 C -0.177 4.177 15 H 0.196 0.804 16 C -0.131 4.131 17 C -0.039 4.039 18 Cl -0.079 7.079 19 Cl -0.047 7.047 20 H 0.097 0.903 21 H 0.086 0.914 22 H 0.104 0.896 23 H 0.045 0.955 24 H 0.020 0.980 25 H 0.076 0.924 26 H 0.135 0.865 27 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -8.931 -15.267 1.071 17.720 hybrid contribution 0.358 0.810 -1.061 1.382 sum -8.573 -14.457 0.010 16.808 Atomic orbital electron populations 1.21957 0.77931 1.03796 1.02902 1.48045 1.08386 1.06207 1.70554 1.18784 0.91213 0.80021 0.95992 1.21645 1.36535 1.06279 0.93013 0.93172 1.25750 0.95039 0.96515 1.01464 1.70034 1.39109 1.14794 1.32750 0.85531 0.78171 0.78138 0.79700 1.18783 1.20538 1.20230 1.19840 0.87177 0.85105 0.76754 1.90664 1.15673 1.87539 1.51520 1.23342 1.04724 0.90992 0.98692 0.80447 1.24109 1.01113 0.96493 0.91429 1.26575 0.90859 1.02121 0.84319 1.98800 1.71239 1.87729 1.50163 1.98743 1.38639 1.73562 1.93761 0.90306 0.91416 0.89620 0.95507 0.97955 0.92425 0.86453 0.81212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.22 10.01 127.77 1.28 3.50 15 2 N -0.60 -24.94 2.86 -851.16 -2.43 -27.37 15 3 C 0.26 13.90 5.16 85.63 0.44 14.34 15 4 C -0.54 -30.91 9.39 25.60 0.24 -30.67 15 5 H 0.05 2.91 7.81 -2.91 -0.02 2.89 15 6 C 0.01 0.66 5.46 84.65 0.46 1.12 15 7 N -0.93 -55.95 13.29 21.45 0.28 -55.67 15 8 Si 0.96 45.55 29.54 68.60 2.03 47.58 15 9 H -0.26 -11.69 7.11 99.48 0.71 -10.99 15 10 H -0.28 -12.98 7.11 99.48 0.71 -12.27 15 11 H -0.28 -13.21 7.11 99.48 0.71 -12.50 15 12 C 0.52 20.84 6.55 87.65 0.57 21.41 15 13 O -0.57 -28.28 15.67 -3.04 -0.05 -28.33 15 14 C -0.16 -4.05 4.64 -11.52 -0.05 -4.10 15 15 H 0.18 3.21 7.26 -2.38 -0.02 3.19 15 16 C -0.09 -2.00 9.72 30.60 0.30 -1.70 15 17 C 0.01 0.34 3.62 30.62 0.11 0.45 15 18 Cl -0.11 -3.62 28.19 -2.72 -0.08 -3.70 15 19 Cl -0.07 -1.52 29.29 -2.72 -0.08 -1.60 15 20 H 0.08 1.80 8.14 -2.38 -0.02 1.79 15 21 H 0.07 2.11 8.07 -2.39 -0.02 2.09 15 22 H 0.09 2.00 6.64 -2.39 -0.02 1.99 15 23 H 0.03 1.44 8.07 -2.39 -0.02 1.42 15 24 H 0.00 0.14 7.42 -2.39 -0.02 0.12 15 25 H 0.27 15.13 8.31 -92.71 -0.77 14.36 15 26 H 0.12 2.99 7.67 -2.39 -0.02 2.97 15 27 H 0.17 2.06 8.14 -2.39 -0.02 2.04 15 Total: -1.00 -71.87 272.24 4.21 -67.66 By element: Atomic # 1 Polarization: -4.09 SS G_CDS: 1.18 Total: -2.91 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 3.35 Total: 4.34 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -2.15 Total: -83.04 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.05 Total: -28.33 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Atomic # 17 Polarization: -5.15 SS G_CDS: -0.16 Total: -5.30 kcal Total: -71.87 4.21 -67.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299250556.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.885 kcal (2) G-P(sol) polarization free energy of solvation -71.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds