Wall clock time and date at job start Sun Mar 29 2020 23:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46507 * 109.47172 * 2 1 4 4 C 1.37091 * 119.99884 * 264.15737 * 3 2 1 5 5 H 1.08003 * 120.00183 * 142.64725 * 4 3 2 6 6 C 1.38953 * 120.00275 * 322.64452 * 4 3 2 7 7 N 1.31415 * 120.00290 * 157.71719 * 6 4 3 8 8 Si 1.86804 * 119.99754 * 337.71634 * 6 4 3 9 9 H 1.48494 * 109.47027 * 95.72697 * 8 6 4 10 10 H 1.48505 * 109.46805 * 215.72918 * 8 6 4 11 11 H 1.48503 * 109.47147 * 335.72531 * 8 6 4 12 12 C 1.34778 * 119.99688 * 84.15024 * 3 2 1 13 13 O 1.21296 * 119.99547 * 180.02562 * 12 3 2 14 14 C 1.50695 * 120.00277 * 0.02562 * 12 3 2 15 15 H 1.09002 * 115.55137 * 34.41113 * 14 12 3 16 16 C 1.52998 * 117.49970 * 180.08583 * 14 12 3 17 17 C 1.53000 * 117.50048 * 248.74951 * 14 12 3 18 18 Cl 1.80300 * 117.49555 * 359.97072 * 17 14 12 19 19 Cl 1.80300 * 117.50252 * 144.99751 * 17 14 12 20 20 H 1.08999 * 109.47083 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47151 * 299.99290 * 1 2 3 22 22 H 1.08998 * 109.47917 * 59.99923 * 1 2 3 23 23 H 1.09002 * 109.47241 * 240.00223 * 2 1 3 24 24 H 1.08998 * 109.47917 * 120.00077 * 2 1 3 25 25 H 0.96997 * 120.00262 * 180.02562 * 7 6 4 26 26 H 1.09000 * 117.49852 * 215.00375 * 16 14 12 27 27 H 1.08997 * 117.50085 * 0.02562 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3607 1.9872 -1.1811 5 1 2.1423 3.0338 -1.3343 6 6 2.9888 1.2550 -2.1811 7 7 2.9300 1.6621 -3.4292 8 14 3.9169 -0.3082 -1.7513 9 1 3.0320 -1.4823 -1.9594 10 1 5.1131 -0.4291 -2.6230 11 1 4.3436 -0.2556 -0.3299 12 6 2.1307 2.0562 1.1612 13 8 2.5346 3.2000 1.1611 14 6 1.7547 1.3900 2.4595 15 1 1.9637 0.3217 2.5175 16 6 1.9028 2.2095 3.7429 17 6 0.5102 1.9066 3.1842 18 17 -0.3937 3.2665 2.4198 19 17 -0.4983 0.7020 4.0689 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8900 22 1 -0.3635 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 3.3682 1.1508 -4.1274 26 1 2.2093 1.6805 4.6453 27 1 2.2718 3.2308 3.6482 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299329678.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:45 Heat of formation + Delta-G solvation = -7.036022 kcal Electronic energy + Delta-G solvation = -14944.454002 eV Core-core repulsion = 12176.904441 eV Total energy + Delta-G solvation = -2767.549561 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 251.022 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.37232 -37.01251 -35.86671 -35.42028 -34.58842 -32.29013 -29.75531 -26.07921 -23.14526 -22.69452 -22.09787 -18.75688 -17.28160 -16.86939 -15.79621 -15.36677 -14.75200 -13.94209 -13.42798 -13.25611 -12.84183 -12.58159 -12.50110 -12.23906 -11.89528 -11.59412 -11.46966 -11.13598 -10.95538 -10.76857 -10.69625 -10.35763 -10.13762 -9.92203 -9.68001 -9.15043 -8.64353 -7.82166 -6.45718 -4.01416 1.25501 2.33555 2.89800 3.04929 3.20798 3.21819 3.83968 4.07696 4.17152 4.50560 4.66014 4.91969 5.27586 5.34246 5.56763 5.61642 5.87950 5.91393 6.02576 6.24464 6.42435 6.76616 7.47347 8.22386 8.42812 8.88886 9.24870 9.68382 10.65787 Molecular weight = 251.02amu Principal moments of inertia in cm(-1) A = 0.031807 B = 0.008382 C = 0.007887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.095995 B = 3339.660616 C = 3549.238372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.085 3.915 3 N -0.450 5.450 4 C -0.313 4.313 5 H 0.107 0.893 6 C 0.062 3.938 7 N -0.858 5.858 8 Si 0.874 3.126 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.263 1.263 12 C 0.487 3.513 13 O -0.550 6.550 14 C -0.146 4.146 15 H 0.134 0.866 16 C -0.118 4.118 17 C 0.016 3.984 18 Cl -0.076 7.076 19 Cl -0.107 7.107 20 H 0.054 0.946 21 H 0.053 0.947 22 H 0.067 0.933 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.275 0.725 26 H 0.120 0.880 27 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.491 -5.259 12.416 14.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.039 4.039 3 N -0.170 5.170 4 C -0.440 4.440 5 H 0.125 0.875 6 C -0.144 4.144 7 N -0.494 5.494 8 Si 0.701 3.299 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.188 1.188 12 C 0.274 3.726 13 O -0.431 6.431 14 C -0.168 4.168 15 H 0.152 0.848 16 C -0.156 4.156 17 C -0.036 4.036 18 Cl -0.049 7.049 19 Cl -0.080 7.080 20 H 0.073 0.927 21 H 0.072 0.928 22 H 0.086 0.914 23 H 0.093 0.907 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.138 0.862 27 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.389 -4.682 12.170 13.759 hybrid contribution 0.254 -1.106 0.036 1.135 sum -4.135 -5.788 12.207 14.128 Atomic orbital electron populations 1.22111 0.95848 1.01077 1.02934 1.21846 0.95044 0.85582 1.01390 1.43650 1.56156 1.11504 1.05726 1.19044 1.38184 0.98321 0.88410 0.87525 1.25357 0.96162 0.98196 0.94700 1.69757 1.40162 1.40068 0.99367 0.87000 0.80275 0.82970 0.79655 1.20092 1.21231 1.18757 1.18907 0.83151 0.87627 0.82875 1.90581 1.49250 1.17551 1.85697 1.23488 0.96136 1.01865 0.95341 0.84828 1.23880 0.90998 1.04126 0.96561 1.26627 0.84921 0.89851 1.02206 1.98769 1.77663 1.46407 1.82074 1.98725 1.73516 1.58666 1.77116 0.92658 0.92790 0.91411 0.90673 0.92265 0.91470 0.86159 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 10.16 37.15 0.38 -2.41 15 2 C 0.08 1.67 4.49 -4.04 -0.02 1.65 15 3 N -0.45 -10.61 2.19 -114.81 -0.25 -10.86 15 4 C -0.31 -8.65 9.36 -14.94 -0.14 -8.79 15 5 H 0.11 3.34 7.91 -52.48 -0.42 2.93 15 6 C 0.06 1.69 5.27 -17.47 -0.09 1.59 15 7 N -0.86 -24.32 13.96 55.50 0.77 -23.55 15 8 Si 0.87 20.00 25.03 -169.99 -4.25 15.75 15 9 H -0.27 -5.83 6.69 56.52 0.38 -5.45 15 10 H -0.29 -6.59 7.11 56.52 0.40 -6.18 15 11 H -0.26 -5.93 7.11 56.52 0.40 -5.53 15 12 C 0.49 10.89 6.45 -10.99 -0.07 10.82 15 13 O -0.55 -14.14 15.96 5.54 0.09 -14.05 15 14 C -0.15 -2.43 4.62 -91.77 -0.42 -2.86 15 15 H 0.13 1.93 6.53 -51.93 -0.34 1.59 15 16 C -0.12 -1.63 9.73 -26.69 -0.26 -1.89 15 17 C 0.02 0.25 3.29 -26.69 -0.09 0.16 15 18 Cl -0.08 -1.32 28.19 -51.86 -1.46 -2.78 15 19 Cl -0.11 -1.40 29.29 -51.86 -1.52 -2.91 15 20 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 21 H 0.05 0.91 7.31 -51.93 -0.38 0.53 15 22 H 0.07 1.29 8.14 -51.93 -0.42 0.86 15 23 H 0.08 1.56 3.56 -51.93 -0.18 1.38 15 24 H 0.06 0.98 6.26 -51.93 -0.33 0.66 15 25 H 0.27 7.20 8.31 -40.82 -0.34 6.86 15 26 H 0.12 1.25 8.14 -51.93 -0.42 0.83 15 27 H 0.13 1.97 7.67 -51.93 -0.40 1.57 15 LS Contribution 260.86 15.07 3.93 3.93 Total: -1.00 -29.94 260.86 -5.88 -35.82 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -2.47 Total: 0.39 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -0.72 Total: -1.73 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.52 Total: -34.41 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.09 Total: -14.05 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.25 Total: 15.75 kcal Atomic # 17 Polarization: -2.71 SS G_CDS: -2.98 Total: -5.69 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.94 -5.88 -35.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299329678.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.781 kcal (2) G-P(sol) polarization free energy of solvation -29.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds