Wall clock time and date at job start Sun Mar 29 2020 23:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46507 * 109.47172 * 2 1 4 4 C 1.37091 * 119.99884 * 264.15737 * 3 2 1 5 5 H 1.08003 * 120.00183 * 142.64725 * 4 3 2 6 6 C 1.38953 * 120.00275 * 322.64452 * 4 3 2 7 7 N 1.31415 * 120.00290 * 157.71719 * 6 4 3 8 8 Si 1.86804 * 119.99754 * 337.71634 * 6 4 3 9 9 H 1.48494 * 109.47027 * 95.72697 * 8 6 4 10 10 H 1.48505 * 109.46805 * 215.72918 * 8 6 4 11 11 H 1.48503 * 109.47147 * 335.72531 * 8 6 4 12 12 C 1.34778 * 119.99688 * 84.15024 * 3 2 1 13 13 O 1.21296 * 119.99547 * 180.02562 * 12 3 2 14 14 C 1.50695 * 120.00277 * 0.02562 * 12 3 2 15 15 H 1.09002 * 115.55137 * 34.41113 * 14 12 3 16 16 C 1.52998 * 117.49970 * 180.08583 * 14 12 3 17 17 C 1.53000 * 117.50048 * 248.74951 * 14 12 3 18 18 Cl 1.80300 * 117.49555 * 359.97072 * 17 14 12 19 19 Cl 1.80300 * 117.50252 * 144.99751 * 17 14 12 20 20 H 1.08999 * 109.47083 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47151 * 299.99290 * 1 2 3 22 22 H 1.08998 * 109.47917 * 59.99923 * 1 2 3 23 23 H 1.09002 * 109.47241 * 240.00223 * 2 1 3 24 24 H 1.08998 * 109.47917 * 120.00077 * 2 1 3 25 25 H 0.96997 * 120.00262 * 180.02562 * 7 6 4 26 26 H 1.09000 * 117.49852 * 215.00375 * 16 14 12 27 27 H 1.08997 * 117.50085 * 0.02562 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3607 1.9872 -1.1811 5 1 2.1423 3.0338 -1.3343 6 6 2.9888 1.2550 -2.1811 7 7 2.9300 1.6621 -3.4292 8 14 3.9169 -0.3082 -1.7513 9 1 3.0320 -1.4823 -1.9594 10 1 5.1131 -0.4291 -2.6230 11 1 4.3436 -0.2556 -0.3299 12 6 2.1307 2.0562 1.1612 13 8 2.5346 3.2000 1.1611 14 6 1.7547 1.3900 2.4595 15 1 1.9637 0.3217 2.5175 16 6 1.9028 2.2095 3.7429 17 6 0.5102 1.9066 3.1842 18 17 -0.3937 3.2665 2.4198 19 17 -0.4983 0.7020 4.0689 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8900 22 1 -0.3635 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 3.3682 1.1508 -4.1274 26 1 2.2093 1.6805 4.6453 27 1 2.2718 3.2308 3.6482 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299329678.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:45 Heat of formation + Delta-G solvation = -26.410991 kcal Electronic energy + Delta-G solvation = -14945.294164 eV Core-core repulsion = 12176.904441 eV Total energy + Delta-G solvation = -2768.389723 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 251.022 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.00139 -38.37028 -37.14595 -37.00519 -35.99140 -34.28746 -31.37130 -27.90780 -24.73802 -24.26498 -23.27154 -20.39298 -18.96366 -18.55254 -17.62281 -16.76739 -16.30518 -15.61250 -15.05684 -14.84118 -14.44307 -14.13272 -14.11437 -13.68069 -13.17037 -13.02022 -12.89506 -12.68016 -12.54028 -12.22989 -11.95118 -11.90685 -11.64004 -11.57261 -11.07316 -10.93063 -10.42606 -9.73495 -8.51596 -6.13290 0.05969 1.10625 1.19777 1.30931 1.45015 1.58520 2.17818 2.42804 2.58436 2.94636 3.18584 3.40449 3.79963 3.99529 4.17491 4.41580 4.50863 4.58950 4.83776 4.91701 4.97667 5.35348 5.53511 6.04914 6.52653 6.92611 7.28181 7.83472 8.65347 Molecular weight = 251.02amu Principal moments of inertia in cm(-1) A = 0.031807 B = 0.008382 C = 0.007887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.095995 B = 3339.660616 C = 3549.238372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.076 3.924 3 N -0.464 5.464 4 C -0.329 4.329 5 H 0.043 0.957 6 C 0.014 3.986 7 N -0.908 5.908 8 Si 0.945 3.055 9 H -0.240 1.240 10 H -0.289 1.289 11 H -0.252 1.252 12 C 0.486 3.514 13 O -0.596 6.596 14 C -0.157 4.157 15 H 0.167 0.833 16 C -0.096 4.096 17 C 0.018 3.982 18 Cl -0.105 7.105 19 Cl -0.076 7.076 20 H 0.094 0.906 21 H 0.056 0.944 22 H 0.037 0.963 23 H 0.065 0.935 24 H 0.101 0.899 25 H 0.280 0.720 26 H 0.168 0.832 27 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.452 -8.504 15.107 17.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.046 4.046 3 N -0.185 5.185 4 C -0.457 4.457 5 H 0.061 0.939 6 C -0.188 4.188 7 N -0.545 5.545 8 Si 0.768 3.232 9 H -0.165 1.165 10 H -0.216 1.216 11 H -0.176 1.176 12 C 0.275 3.725 13 O -0.480 6.480 14 C -0.179 4.179 15 H 0.185 0.815 16 C -0.133 4.133 17 C -0.034 4.034 18 Cl -0.078 7.078 19 Cl -0.049 7.049 20 H 0.113 0.887 21 H 0.076 0.924 22 H 0.056 0.944 23 H 0.083 0.917 24 H 0.119 0.881 25 H 0.090 0.910 26 H 0.185 0.815 27 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.382 -7.949 14.878 17.429 hybrid contribution 0.163 -0.018 -0.743 0.761 sum -4.220 -7.967 14.135 16.766 Atomic orbital electron populations 1.22054 0.94341 1.03197 1.01647 1.22120 0.96412 0.83242 1.02785 1.43763 1.56824 1.13146 1.04764 1.18585 1.39850 0.96302 0.90999 0.93863 1.26152 0.96302 1.02445 0.93948 1.69878 1.41442 1.42521 1.00679 0.85884 0.78637 0.79114 0.79601 1.16451 1.21623 1.17589 1.19763 0.81369 0.86954 0.84459 1.90553 1.50740 1.19790 1.86873 1.23348 0.98137 1.03394 0.93045 0.81535 1.24087 0.89179 1.03488 0.96595 1.26579 0.85333 0.89470 1.02051 1.98774 1.78262 1.48041 1.82772 1.98735 1.72817 1.57251 1.76063 0.88712 0.92446 0.94386 0.91702 0.88115 0.91012 0.81491 0.86521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.96 10.16 71.98 0.73 -4.23 15 2 C 0.08 2.79 4.49 86.38 0.39 3.18 15 3 N -0.46 -21.86 2.19 -635.54 -1.39 -23.25 15 4 C -0.33 -19.11 9.36 84.04 0.79 -18.32 15 5 H 0.04 2.97 7.91 -2.91 -0.02 2.95 15 6 C 0.01 0.78 5.27 84.93 0.45 1.23 15 7 N -0.91 -53.63 13.96 21.66 0.30 -53.32 15 8 Si 0.95 40.57 25.03 68.60 1.72 42.29 15 9 H -0.24 -8.96 6.69 99.48 0.67 -8.29 15 10 H -0.29 -12.50 7.11 99.48 0.71 -11.80 15 11 H -0.25 -10.30 7.11 99.48 0.71 -9.59 15 12 C 0.49 21.53 6.45 87.66 0.57 22.09 15 13 O -0.60 -31.61 15.96 -3.08 -0.05 -31.66 15 14 C -0.16 -4.75 4.62 -11.54 -0.05 -4.80 15 15 H 0.17 3.89 6.53 -2.39 -0.02 3.88 15 16 C -0.10 -2.33 9.73 30.62 0.30 -2.03 15 17 C 0.02 0.49 3.29 30.62 0.10 0.59 15 18 Cl -0.11 -3.60 28.19 -2.72 -0.08 -3.67 15 19 Cl -0.08 -1.66 29.29 -2.72 -0.08 -1.74 15 20 H 0.09 2.29 8.14 -2.39 -0.02 2.27 15 21 H 0.06 1.78 7.31 -2.39 -0.02 1.76 15 22 H 0.04 1.42 8.14 -2.39 -0.02 1.40 15 23 H 0.06 2.50 3.56 -2.39 -0.01 2.49 15 24 H 0.10 2.82 6.26 -2.39 -0.01 2.80 15 25 H 0.28 15.14 8.31 -92.71 -0.77 14.37 15 26 H 0.17 2.51 8.14 -2.39 -0.02 2.49 15 27 H 0.12 3.29 7.67 -2.39 -0.02 3.27 15 Total: -1.00 -70.50 260.86 4.84 -65.66 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 1.15 Total: 8.00 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 3.26 Total: -2.29 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -1.09 Total: -76.58 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.05 Total: -31.66 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 1.72 Total: 42.29 kcal Atomic # 17 Polarization: -5.26 SS G_CDS: -0.16 Total: -5.41 kcal Total: -70.50 4.84 -65.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299329678.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.249 kcal (2) G-P(sol) polarization free energy of solvation -70.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds