Wall clock time and date at job start Sun Mar 29 2020 23:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99922 * 2 1 4 4 H 1.48502 * 109.47506 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47009 * 299.99729 * 3 2 1 6 6 H 1.48501 * 109.47425 * 59.99563 * 3 2 1 7 7 C 1.37877 * 120.00385 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00148 * 179.97438 * 7 2 1 9 9 S 1.76207 * 119.99668 * 0.02562 * 7 2 1 10 10 O 1.42096 * 106.40259 * 66.45735 * 9 7 2 11 11 O 1.42102 * 106.39659 * 293.53283 * 9 7 2 12 12 N 1.65602 * 107.21510 * 179.97438 * 9 7 2 13 13 C 1.47019 * 125.65011 * 270.01852 * 12 9 7 14 14 C 1.54322 * 107.27223 * 181.03872 * 13 12 9 15 15 H 1.09002 * 110.72203 * 263.83177 * 14 13 12 16 16 O 1.42900 * 110.71905 * 140.73324 * 14 13 12 17 17 C 1.55154 * 102.94204 * 22.19795 * 14 13 12 18 18 H 1.08999 * 111.00353 * 82.56825 * 17 14 13 19 19 C 1.52999 * 111.00486 * 206.41955 * 17 14 13 20 20 O 1.42900 * 109.47214 * 178.64527 * 19 17 14 21 21 C 1.47426 * 125.64780 * 89.99932 * 12 9 7 22 22 H 0.96999 * 120.00528 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.88389 * 300.46373 * 13 12 9 24 24 H 1.09004 * 109.87600 * 61.47331 * 13 12 9 25 25 H 0.96711 * 113.99811 * 61.45858 * 16 14 13 26 26 H 1.08993 * 109.47274 * 298.64896 * 19 17 14 27 27 H 1.09005 * 109.47002 * 58.65139 * 19 17 14 28 28 H 0.96703 * 114.00461 * 179.97438 * 20 19 17 29 29 H 1.08998 * 110.36718 * 274.72894 * 21 12 9 30 30 H 1.09005 * 110.36600 * 37.05455 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 16 1.1235 -2.7200 0.0005 10 8 0.4519 -2.7956 -1.2494 11 8 0.4511 -2.7950 1.2501 12 7 2.2484 -3.9354 0.0005 13 6 2.8307 -4.5640 -1.1941 14 6 3.8056 -5.6569 -0.7077 15 1 4.8271 -5.2775 -0.6791 16 8 3.7218 -6.8158 -1.5396 17 6 3.2945 -5.9662 0.7242 18 1 2.4589 -6.6656 0.6982 19 6 4.4251 -6.4986 1.6070 20 8 3.9267 -6.7422 2.9239 21 6 2.8320 -4.5659 1.1985 22 1 -0.4851 0.8400 -0.0004 23 1 2.0424 -5.0126 -1.7985 24 1 3.3684 -3.8186 -1.7803 25 1 3.9584 -6.6548 -2.4634 26 1 4.8081 -7.4279 1.1857 27 1 5.2277 -5.7624 1.6528 28 1 4.5907 -7.0825 3.5391 29 1 3.6831 -3.9862 1.5559 30 1 2.0801 -4.6601 1.9821 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306257652.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:41 Heat of formation + Delta-G solvation = -187.937587 kcal Electronic energy + Delta-G solvation = -17314.725007 eV Core-core repulsion = 14236.498602 eV Total energy + Delta-G solvation = -3078.226405 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.071 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.04957 -36.57072 -35.32309 -35.20832 -33.95991 -33.08853 -30.91383 -28.03824 -26.13817 -25.01927 -21.92565 -20.33361 -18.76424 -17.77365 -17.21715 -17.04008 -16.27114 -15.74443 -15.11747 -14.59959 -14.18621 -13.92571 -13.63246 -13.42531 -12.94127 -12.77273 -12.04658 -12.00975 -11.57291 -11.37681 -11.24456 -11.10311 -10.62588 -10.59572 -10.42620 -10.28157 -10.20356 -9.93895 -9.91576 -9.26903 -8.92752 -8.18921 -6.70565 -5.33000 2.20641 3.04399 3.12396 3.19438 3.94557 4.03391 4.21720 4.57007 4.66835 4.80327 4.95901 5.04647 5.29445 5.37051 5.49924 5.70552 5.80042 5.84639 6.01312 6.14358 6.22324 6.29964 6.43028 6.82401 7.31954 7.43684 7.59238 7.61287 7.96916 8.87841 10.23143 Molecular weight = 251.07amu Principal moments of inertia in cm(-1) A = 0.030132 B = 0.007095 C = 0.006819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.027662 B = 3945.567740 C = 4104.905259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.132 3.868 3 Si 0.922 3.078 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.270 1.270 7 C -1.020 5.020 8 H 0.102 0.898 9 S 2.727 3.273 10 O -1.001 7.001 11 O -0.998 6.998 12 N -1.019 6.019 13 C 0.096 3.904 14 C 0.100 3.900 15 H 0.073 0.927 16 O -0.560 6.560 17 C -0.093 4.093 18 H 0.098 0.902 19 C 0.089 3.911 20 O -0.569 6.569 21 C 0.132 3.868 22 H 0.291 0.709 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.380 0.620 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.377 0.623 29 H 0.062 0.938 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.504 -9.440 0.047 14.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.086 4.086 3 Si 0.745 3.255 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.195 1.195 7 C -1.153 5.153 8 H 0.120 0.880 9 S 2.829 3.171 10 O -0.991 6.991 11 O -0.989 6.989 12 N -0.855 5.855 13 C -0.032 4.032 14 C 0.040 3.960 15 H 0.091 0.909 16 O -0.366 6.366 17 C -0.113 4.113 18 H 0.116 0.884 19 C 0.011 3.989 20 O -0.374 6.374 21 C 0.006 3.994 22 H 0.101 0.899 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.228 0.772 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.224 0.776 29 H 0.081 0.919 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.573 -9.499 0.324 13.490 hybrid contribution 1.720 1.373 -0.358 2.230 sum 11.294 -8.125 -0.034 13.913 Atomic orbital electron populations 1.69900 1.06790 1.30693 1.40166 1.24769 0.94484 1.00843 0.88508 0.86119 0.80390 0.80351 0.78601 1.18650 1.19573 1.19540 1.30640 1.06167 1.11780 1.66732 0.87960 1.00200 0.71591 0.72516 0.72794 1.93354 1.72463 1.87482 1.45809 1.93362 1.72325 1.87432 1.45751 1.59140 1.61772 1.54237 1.10395 1.22209 0.96748 0.95217 0.88980 1.22832 0.97800 0.85283 0.90079 0.90883 1.86509 1.92193 1.34043 1.23825 1.22355 0.98820 0.98312 0.91827 0.88367 1.22082 0.95058 0.98878 0.82865 1.86535 1.40967 1.88387 1.21506 1.21810 0.98612 0.90326 0.88634 0.89879 0.90816 0.91466 0.77206 0.93109 0.93341 0.77608 0.91945 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.17 13.19 55.43 0.73 -24.44 16 2 C 0.13 3.72 5.46 -17.82 -0.10 3.62 16 3 Si 0.92 20.68 29.54 -169.99 -5.02 15.66 16 4 H -0.26 -5.66 7.11 56.52 0.40 -5.25 16 5 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 7 C -1.02 -28.47 9.75 30.60 0.30 -28.18 16 8 H 0.10 2.62 7.81 -52.49 -0.41 2.21 16 9 S 2.73 74.56 5.22 -107.50 -0.56 74.00 16 10 O -1.00 -29.81 17.60 -57.17 -1.01 -30.81 16 11 O -1.00 -30.00 17.34 -57.17 -0.99 -30.99 16 12 N -1.02 -21.50 3.70 -111.42 -0.41 -21.91 16 13 C 0.10 1.62 6.76 -3.07 -0.02 1.60 16 14 C 0.10 1.34 3.79 -24.90 -0.09 1.24 16 15 H 0.07 0.81 8.04 -51.93 -0.42 0.39 16 16 O -0.56 -6.74 13.40 -35.23 -0.47 -7.21 16 17 C -0.09 -1.38 3.06 -88.47 -0.27 -1.65 16 18 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 19 C 0.09 1.03 6.49 37.16 0.24 1.27 16 20 O -0.57 -6.83 13.51 -35.23 -0.48 -7.31 16 21 C 0.13 2.39 6.44 -2.53 -0.02 2.37 16 22 H 0.29 7.72 8.31 -40.82 -0.34 7.38 16 23 H 0.07 1.28 8.06 -51.93 -0.42 0.86 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.38 2.85 9.11 45.56 0.42 3.27 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.48 8.10 -51.93 -0.42 0.06 16 28 H 0.38 2.54 9.12 45.56 0.42 2.95 16 29 H 0.06 1.02 8.00 -51.93 -0.42 0.61 16 30 H 0.09 1.71 7.78 -51.93 -0.40 1.31 16 LS Contribution 275.32 15.07 4.15 4.15 Total: -1.00 -37.71 275.32 -6.08 -43.78 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -2.06 Total: 4.80 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: 0.04 Total: -19.71 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 0.32 Total: -46.35 kcal Atomic # 8 Polarization: -73.38 SS G_CDS: -2.95 Total: -76.32 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 74.56 SS G_CDS: -0.56 Total: 74.00 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -37.71 -6.08 -43.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306257652.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.155 kcal (2) G-P(sol) polarization free energy of solvation -37.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds