Wall clock time and date at job start Sun Mar 29 2020 23:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99922 * 2 1 4 4 H 1.48502 * 109.47506 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47009 * 299.99729 * 3 2 1 6 6 H 1.48501 * 109.47425 * 59.99563 * 3 2 1 7 7 C 1.37877 * 120.00385 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00148 * 179.97438 * 7 2 1 9 9 S 1.76207 * 119.99668 * 0.02562 * 7 2 1 10 10 O 1.42096 * 106.40259 * 66.45735 * 9 7 2 11 11 O 1.42102 * 106.39659 * 293.53283 * 9 7 2 12 12 N 1.65602 * 107.21510 * 179.97438 * 9 7 2 13 13 C 1.47019 * 125.65011 * 270.01852 * 12 9 7 14 14 C 1.54322 * 107.27223 * 181.03872 * 13 12 9 15 15 H 1.09002 * 110.72203 * 263.83177 * 14 13 12 16 16 O 1.42900 * 110.71905 * 140.73324 * 14 13 12 17 17 C 1.55154 * 102.94204 * 22.19795 * 14 13 12 18 18 H 1.08999 * 111.00353 * 82.56825 * 17 14 13 19 19 C 1.52999 * 111.00486 * 206.41955 * 17 14 13 20 20 O 1.42900 * 109.47214 * 178.64527 * 19 17 14 21 21 C 1.47426 * 125.64780 * 89.99932 * 12 9 7 22 22 H 0.96999 * 120.00528 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.88389 * 300.46373 * 13 12 9 24 24 H 1.09004 * 109.87600 * 61.47331 * 13 12 9 25 25 H 0.96711 * 113.99811 * 61.45858 * 16 14 13 26 26 H 1.08993 * 109.47274 * 298.64896 * 19 17 14 27 27 H 1.09005 * 109.47002 * 58.65139 * 19 17 14 28 28 H 0.96703 * 114.00461 * 179.97438 * 20 19 17 29 29 H 1.08998 * 110.36718 * 274.72894 * 21 12 9 30 30 H 1.09005 * 110.36600 * 37.05455 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 16 1.1235 -2.7200 0.0005 10 8 0.4519 -2.7956 -1.2494 11 8 0.4511 -2.7950 1.2501 12 7 2.2484 -3.9354 0.0005 13 6 2.8307 -4.5640 -1.1941 14 6 3.8056 -5.6569 -0.7077 15 1 4.8271 -5.2775 -0.6791 16 8 3.7218 -6.8158 -1.5396 17 6 3.2945 -5.9662 0.7242 18 1 2.4589 -6.6656 0.6982 19 6 4.4251 -6.4986 1.6070 20 8 3.9267 -6.7422 2.9239 21 6 2.8320 -4.5659 1.1985 22 1 -0.4851 0.8400 -0.0004 23 1 2.0424 -5.0126 -1.7985 24 1 3.3684 -3.8186 -1.7803 25 1 3.9584 -6.6548 -2.4634 26 1 4.8081 -7.4279 1.1857 27 1 5.2277 -5.7624 1.6528 28 1 4.5907 -7.0825 3.5391 29 1 3.6831 -3.9862 1.5559 30 1 2.0801 -4.6601 1.9821 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306257652.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:41 Heat of formation + Delta-G solvation = -224.731475 kcal Electronic energy + Delta-G solvation = -17316.320510 eV Core-core repulsion = 14236.498602 eV Total energy + Delta-G solvation = -3079.821908 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.071 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.24372 -37.54061 -37.41635 -36.47597 -36.21440 -35.21134 -32.16046 -29.34766 -28.30478 -26.18472 -23.23637 -21.47844 -20.81173 -19.37572 -18.55003 -18.20145 -17.98506 -17.19251 -16.91750 -16.08448 -15.82707 -15.65421 -14.97063 -14.56407 -14.31843 -14.13332 -13.95659 -13.37229 -13.33128 -13.04746 -12.94030 -12.58695 -12.57618 -12.50083 -12.29028 -11.93818 -11.59922 -11.29565 -11.09847 -10.96227 -10.81591 -9.85386 -8.78036 -7.53518 0.18898 1.32222 1.32629 1.51252 2.18460 2.53992 2.75184 3.03987 3.35334 3.44550 3.73054 3.95036 4.03474 4.24135 4.34080 4.39687 4.44913 4.56575 4.65631 4.80824 4.86693 4.91602 5.12126 5.21982 5.31911 5.71585 5.87211 6.73501 6.87837 7.01620 8.18015 Molecular weight = 251.07amu Principal moments of inertia in cm(-1) A = 0.030132 B = 0.007095 C = 0.006819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.027662 B = 3945.567740 C = 4104.905259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.066 3.934 3 Si 0.996 3.004 4 H -0.244 1.244 5 H -0.258 1.258 6 H -0.259 1.259 7 C -1.037 5.037 8 H 0.123 0.877 9 S 2.728 3.272 10 O -1.039 7.039 11 O -1.041 7.041 12 N -1.023 6.023 13 C 0.081 3.919 14 C 0.121 3.879 15 H 0.112 0.888 16 O -0.567 6.567 17 C -0.093 4.093 18 H 0.076 0.924 19 C 0.095 3.905 20 O -0.595 6.595 21 C 0.123 3.877 22 H 0.300 0.700 23 H 0.060 0.940 24 H 0.082 0.918 25 H 0.402 0.598 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.400 0.600 29 H 0.083 0.917 30 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.747 -9.309 -0.182 17.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.146 4.146 3 Si 0.813 3.187 4 H -0.167 1.167 5 H -0.182 1.182 6 H -0.183 1.183 7 C -1.171 5.171 8 H 0.141 0.859 9 S 2.832 3.168 10 O -1.029 7.029 11 O -1.031 7.031 12 N -0.862 5.862 13 C -0.045 4.045 14 C 0.061 3.939 15 H 0.130 0.870 16 O -0.375 6.375 17 C -0.114 4.114 18 H 0.094 0.906 19 C 0.017 3.983 20 O -0.404 6.404 21 C -0.002 4.002 22 H 0.110 0.890 23 H 0.078 0.922 24 H 0.100 0.900 25 H 0.253 0.747 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.250 0.750 29 H 0.102 0.898 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.821 -9.408 0.086 15.902 hybrid contribution 0.698 1.209 -0.294 1.427 sum 13.519 -8.199 -0.208 15.812 Atomic orbital electron populations 1.70001 1.08946 1.32452 1.41407 1.26129 0.95434 1.05631 0.87433 0.85029 0.79551 0.74633 0.79459 1.16655 1.18178 1.18339 1.30947 1.07248 1.12166 1.66719 0.85934 0.99680 0.72261 0.73441 0.71385 1.93290 1.74365 1.88318 1.46949 1.93296 1.74357 1.88307 1.47139 1.58545 1.61242 1.53271 1.13171 1.22625 0.97443 0.96830 0.87643 1.22680 0.98167 0.84185 0.88903 0.87017 1.86474 1.92370 1.33192 1.25485 1.22358 0.99667 0.95494 0.93845 0.90596 1.22059 0.93702 1.00312 0.82196 1.86483 1.42852 1.88770 1.22304 1.22064 0.98310 0.92758 0.87039 0.88990 0.92152 0.90012 0.74706 0.91074 0.90952 0.74978 0.89839 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.52 13.19 21.45 0.28 -54.23 16 2 C 0.07 3.73 5.46 84.66 0.46 4.20 16 3 Si 1.00 41.26 29.54 68.60 2.03 43.28 16 4 H -0.24 -9.26 7.11 99.48 0.71 -8.55 16 5 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 6 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 7 C -1.04 -58.04 9.75 67.73 0.66 -57.38 16 8 H 0.12 6.11 7.81 -2.91 -0.02 6.09 16 9 S 2.73 153.99 5.22 -56.49 -0.29 153.70 16 10 O -1.04 -64.39 17.60 -128.00 -2.25 -66.64 16 11 O -1.04 -65.50 17.34 -128.00 -2.22 -67.72 16 12 N -1.02 -43.46 3.70 -506.42 -1.87 -45.33 16 13 C 0.08 2.66 6.76 86.73 0.59 3.24 16 14 C 0.12 2.86 3.79 31.78 0.12 2.98 16 15 H 0.11 1.88 8.04 -2.39 -0.02 1.86 16 16 O -0.57 -11.87 13.40 -148.98 -2.00 -13.87 16 17 C -0.09 -2.60 3.06 -9.40 -0.03 -2.63 16 18 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 19 C 0.10 1.88 6.49 71.98 0.47 2.34 16 20 O -0.60 -13.04 13.51 -148.98 -2.01 -15.05 16 21 C 0.12 4.42 6.44 86.86 0.56 4.98 16 22 H 0.30 16.25 8.31 -92.71 -0.77 15.48 16 23 H 0.06 2.11 8.06 -2.39 -0.02 2.09 16 24 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 25 H 0.40 4.65 9.11 -74.05 -0.67 3.98 16 26 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.07 1.11 8.10 -2.38 -0.02 1.09 16 28 H 0.40 4.33 9.12 -74.05 -0.68 3.66 16 29 H 0.08 2.60 8.00 -2.39 -0.02 2.59 16 30 H 0.06 2.45 7.78 -2.38 -0.02 2.43 16 Total: -1.00 -84.57 275.32 -5.69 -90.26 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -0.18 Total: 17.87 kcal Atomic # 6 Polarization: -45.09 SS G_CDS: 2.83 Total: -42.26 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -1.59 Total: -99.57 kcal Atomic # 8 Polarization: -154.79 SS G_CDS: -8.48 Total: -163.28 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 16 Polarization: 153.99 SS G_CDS: -0.29 Total: 153.70 kcal Total: -84.57 -5.69 -90.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306257652.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.474 kcal (2) G-P(sol) polarization free energy of solvation -84.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds