Wall clock time and date at job start Sun Mar 29 2020 23:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86795 * 120.00369 * 2 1 4 4 H 1.48502 * 109.47243 * 239.99834 * 3 2 1 5 5 H 1.48498 * 109.46963 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47312 * 119.99593 * 3 2 1 7 7 C 1.37884 * 119.99584 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99403 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00321 * 0.02562 * 7 2 1 10 10 O 1.42093 * 106.40393 * 66.45626 * 9 7 2 11 11 O 1.42101 * 106.40098 * 293.53959 * 9 7 2 12 12 N 1.65601 * 107.22036 * 180.02562 * 9 7 2 13 13 C 1.48207 * 118.53206 * 270.02913 * 12 9 7 14 14 C 1.54292 * 110.71404 * 138.79060 * 13 12 9 15 15 O 1.40528 * 109.86625 * 320.59834 * 14 13 12 16 16 C 1.42561 * 113.54164 * 95.29183 * 15 14 13 17 17 C 1.47689 * 113.66678 * 272.24238 * 16 15 14 18 18 H 1.09005 * 109.43253 * 300.74015 * 17 16 15 19 19 O 1.42893 * 109.43754 * 180.86684 * 17 16 15 20 20 C 1.44461 * 118.51271 * 89.99726 * 12 9 7 21 21 H 0.97004 * 119.99852 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.23425 * 18.46603 * 13 12 9 23 23 H 1.09001 * 109.17636 * 259.07595 * 13 12 9 24 24 H 1.09005 * 109.40849 * 200.47780 * 14 13 12 25 25 H 1.08997 * 109.41095 * 80.71763 * 14 13 12 26 26 H 1.09004 * 108.64496 * 151.16212 * 16 15 14 27 27 H 1.08994 * 108.53647 * 33.24837 * 16 15 14 28 28 H 0.96694 * 114.00395 * 59.78740 * 19 17 16 29 29 H 1.09002 * 109.49425 * 148.95850 * 20 12 9 30 30 H 1.08996 * 109.49441 * 28.90185 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1941 0.0010 9 16 1.1234 -2.7200 0.0005 10 8 0.4517 -2.7956 -1.2493 11 8 0.4508 -2.7950 1.2500 12 7 2.2481 -3.9355 0.0019 13 6 2.7304 -4.4552 -1.2995 14 6 4.2531 -4.7009 -1.2586 15 8 4.8840 -3.6706 -0.5408 16 6 5.1071 -3.9865 0.8313 17 6 3.9702 -3.6460 1.7105 18 1 3.7653 -2.5777 1.6410 19 8 4.2968 -3.9799 3.0609 20 6 2.7155 -4.4410 1.2719 21 1 -0.4850 0.8401 -0.0004 22 1 2.5046 -3.7304 -2.0816 23 1 2.2213 -5.3932 -1.5214 24 1 4.6436 -4.7251 -2.2760 25 1 4.4530 -5.6558 -0.7725 26 1 5.9879 -3.4441 1.1750 27 1 5.3031 -5.0555 0.9133 28 1 5.0743 -3.5181 3.4032 29 1 2.9700 -5.4962 1.1720 30 1 1.9316 -4.3253 2.0203 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306897562.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:59 Heat of formation + Delta-G solvation = -207.043046 kcal Electronic energy + Delta-G solvation = -18123.533615 eV Core-core repulsion = 15044.478735 eV Total energy + Delta-G solvation = -3079.054880 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.071 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.61758 -37.84430 -37.40149 -36.38338 -36.14829 -35.14751 -32.33501 -28.82895 -28.27169 -27.26351 -22.93498 -22.64784 -20.56419 -19.43394 -18.71758 -18.37859 -17.51277 -17.19981 -17.00843 -16.31298 -15.96778 -15.64991 -15.17244 -14.82774 -14.67133 -14.02788 -13.70820 -13.47431 -13.24509 -13.07552 -13.00180 -12.55056 -12.49562 -12.43173 -12.34104 -11.99977 -11.58202 -11.25990 -11.19163 -10.99420 -10.40869 -9.87557 -8.74799 -7.47240 0.26006 1.31556 1.34348 1.47248 2.18240 2.51706 2.57293 2.98731 3.44877 3.73630 3.80591 3.88250 3.93137 4.17784 4.28276 4.30765 4.47879 4.55302 4.72630 4.75030 4.83757 4.86525 4.98096 5.16485 5.30127 5.91890 5.96584 6.34598 6.78307 6.85072 8.20679 Molecular weight = 251.07amu Principal moments of inertia in cm(-1) A = 0.022743 B = 0.010684 C = 0.009670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.863131 B = 2620.039975 C = 2894.752642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.988 3.012 4 H -0.251 1.251 5 H -0.263 1.263 6 H -0.251 1.251 7 C -1.031 5.031 8 H 0.117 0.883 9 S 2.710 3.290 10 O -1.040 7.040 11 O -1.042 7.042 12 N -0.993 5.993 13 C 0.081 3.919 14 C 0.052 3.948 15 O -0.378 6.378 16 C 0.037 3.963 17 C 0.050 3.950 18 H 0.044 0.956 19 O -0.564 6.564 20 C 0.122 3.878 21 H 0.298 0.702 22 H 0.072 0.928 23 H 0.091 0.909 24 H 0.121 0.879 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.398 0.602 29 H 0.110 0.890 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.417 -7.693 0.393 15.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.806 3.194 4 H -0.174 1.174 5 H -0.187 1.187 6 H -0.174 1.174 7 C -1.164 5.164 8 H 0.135 0.865 9 S 2.812 3.188 10 O -1.030 7.030 11 O -1.032 7.032 12 N -0.832 5.832 13 C -0.044 4.044 14 C -0.026 4.026 15 O -0.296 6.296 16 C -0.040 4.040 17 C -0.012 4.012 18 H 0.063 0.937 19 O -0.372 6.372 20 C -0.005 4.005 21 H 0.109 0.891 22 H 0.090 0.910 23 H 0.109 0.891 24 H 0.139 0.861 25 H 0.104 0.896 26 H 0.123 0.877 27 H 0.101 0.899 28 H 0.249 0.751 29 H 0.128 0.872 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.847 -8.038 0.247 14.319 hybrid contribution 0.619 1.388 0.210 1.534 sum 12.466 -6.651 0.457 14.136 Atomic orbital electron populations 1.69988 1.08772 1.32328 1.41696 1.26012 0.95336 1.05314 0.87561 0.85192 0.78813 0.74623 0.80733 1.17430 1.18724 1.17424 1.30880 1.06882 1.12372 1.66312 0.86480 1.00280 0.72965 0.74089 0.71449 1.93290 1.74627 1.88342 1.46709 1.93291 1.74661 1.88277 1.46938 1.57026 1.60798 1.54552 1.10775 1.22752 0.97850 1.00807 0.82946 1.23105 0.89286 0.91033 0.99199 1.87491 1.78296 1.43116 1.20712 1.22296 0.97098 1.02645 0.81964 1.22180 0.96566 0.99129 0.83291 0.93749 1.86440 1.53268 1.71096 1.26380 1.21073 0.95862 0.99386 0.84205 0.89144 0.90984 0.89064 0.86118 0.89626 0.87734 0.89918 0.75141 0.87174 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.74 13.19 21.45 0.28 -54.46 16 2 C 0.07 4.00 5.46 84.66 0.46 4.47 16 3 Si 0.99 42.31 29.54 68.60 2.03 44.34 16 4 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 5 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 6 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 7 C -1.03 -58.37 9.32 67.74 0.63 -57.73 16 8 H 0.12 6.12 7.35 -2.91 -0.02 6.10 16 9 S 2.71 151.24 4.86 -56.49 -0.27 150.96 16 10 O -1.04 -63.49 16.74 -128.00 -2.14 -65.63 16 11 O -1.04 -64.47 16.43 -128.00 -2.10 -66.57 16 12 N -0.99 -40.85 2.85 -510.54 -1.46 -42.30 16 13 C 0.08 2.64 6.42 86.49 0.56 3.20 16 14 C 0.05 1.24 6.49 72.42 0.47 1.71 16 15 O -0.38 -11.07 10.23 -144.93 -1.48 -12.55 16 16 C 0.04 0.90 5.60 70.32 0.39 1.29 16 17 C 0.05 1.58 3.63 29.57 0.11 1.69 16 18 H 0.04 1.72 7.23 -2.38 -0.02 1.70 16 19 O -0.56 -15.22 13.30 -148.98 -1.98 -17.20 16 20 C 0.12 4.35 5.32 87.40 0.46 4.82 16 21 H 0.30 16.39 8.31 -92.70 -0.77 15.62 16 22 H 0.07 2.67 7.27 -2.39 -0.02 2.65 16 23 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 24 H 0.12 2.19 8.14 -2.38 -0.02 2.17 16 25 H 0.09 1.49 7.20 -2.39 -0.02 1.47 16 26 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 27 H 0.08 1.56 7.27 -2.39 -0.02 1.54 16 28 H 0.40 6.61 9.06 -74.06 -0.67 5.94 16 29 H 0.11 3.03 8.10 -2.39 -0.02 3.01 16 30 H 0.07 3.02 6.80 -2.39 -0.02 3.00 16 Total: -1.00 -81.36 263.72 -3.55 -84.91 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.49 Total: 19.07 kcal Atomic # 6 Polarization: -43.65 SS G_CDS: 3.09 Total: -40.57 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -1.17 Total: -96.76 kcal Atomic # 8 Polarization: -154.24 SS G_CDS: -7.71 Total: -161.95 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: 151.24 SS G_CDS: -0.27 Total: 150.96 kcal Total: -81.36 -3.55 -84.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306897562.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.136 kcal (2) G-P(sol) polarization free energy of solvation -81.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds