Wall clock time and date at job start Sun Mar 29 2020 23:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31728 * 119.73036 * 2 1 4 4 C 1.32532 * 121.65946 * 179.97438 * 3 2 1 5 5 N 1.38645 * 119.54248 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99793 * 359.97438 * 5 4 3 7 7 C 1.50699 * 109.46700 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00629 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99714 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00098 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99896 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47496 * 89.99763 * 11 9 7 13 13 H 1.48508 * 109.47255 * 209.99740 * 11 9 7 14 14 H 1.48503 * 109.47098 * 329.99627 * 11 9 7 15 15 C 1.39466 * 120.91946 * 0.25575 * 4 3 2 16 16 Cl 1.73596 * 120.31705 * 179.74854 * 15 4 3 17 17 C 1.36973 * 119.36369 * 359.49031 * 15 4 3 18 18 C 1.39555 * 119.73829 * 179.97438 * 2 1 3 19 19 C 1.43204 * 120.47445 * 0.04415 * 18 2 1 20 20 N 3.48960 * 80.37585 * 180.02562 * 2 1 3 21 21 H 1.09000 * 109.47309 * 90.00022 * 1 2 3 22 22 H 1.08999 * 109.46732 * 209.99418 * 1 2 3 23 23 H 1.08991 * 109.47700 * 329.99762 * 1 2 3 24 24 H 0.97005 * 119.99947 * 179.97438 * 5 4 3 25 25 H 1.08998 * 109.47134 * 299.99608 * 6 5 4 26 26 H 1.08994 * 109.47397 * 59.99899 * 6 5 4 27 27 H 0.97003 * 119.99632 * 179.97438 * 10 9 7 28 28 H 1.07993 * 120.76307 * 180.26385 * 17 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1603 1.1439 0.0000 4 6 3.4848 1.1885 0.0005 5 7 4.1275 2.4170 -0.0001 6 6 3.3427 3.6541 -0.0018 7 6 4.2735 4.8393 -0.0027 8 1 5.3427 4.6864 -0.0017 9 6 3.7602 6.1189 -0.0038 10 7 2.4583 6.3052 -0.0046 11 14 4.9139 7.5881 -0.0042 12 1 5.2204 7.9765 -1.4044 13 1 4.2656 8.7268 0.6947 14 1 6.1729 7.2290 0.6967 15 6 4.2413 0.0168 -0.0043 16 17 5.9756 0.0935 -0.0101 17 6 3.6028 -1.1949 0.0010 18 6 2.1993 -1.2118 0.0005 19 6 1.4878 -2.4546 0.0001 20 7 0.9236 -3.4405 -0.0015 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5137 23 1 -0.3634 0.8899 0.5138 24 1 5.0967 2.4574 0.0007 25 1 2.7150 3.6849 -0.8923 26 1 2.7135 3.6865 0.8876 27 1 2.0972 7.2055 -0.0050 28 1 4.1663 -2.1162 0.0018 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309198743.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:38 Heat of formation + Delta-G solvation = 32.749801 kcal Electronic energy + Delta-G solvation = -15087.578600 eV Core-core repulsion = 12356.479882 eV Total energy + Delta-G solvation = -2731.098718 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.60184 -38.14105 -37.52442 -36.85997 -34.78882 -33.87211 -32.40324 -29.47850 -28.26371 -25.37664 -23.82003 -23.12785 -20.15369 -19.24907 -18.13471 -17.69847 -16.64078 -16.30411 -15.85510 -15.43901 -14.91905 -14.74306 -14.24882 -14.16523 -14.11190 -13.96045 -13.84405 -13.39294 -13.13209 -12.85497 -12.81073 -12.59344 -12.21757 -12.11187 -11.43112 -11.27127 -10.70175 -10.58716 -10.45466 -8.66929 -8.27336 -6.41773 -0.26080 0.10053 1.01056 1.44617 1.45086 1.56060 1.70584 1.95779 2.21898 2.44226 2.80285 2.91477 3.08207 3.33254 3.61595 3.78084 4.27805 4.48365 4.64645 4.71021 4.83071 4.95992 5.12401 5.34620 5.35328 5.53556 5.85160 6.07785 6.43769 6.51835 6.69507 7.16897 7.31225 8.83672 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.027314 B = 0.005656 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.877958 B = 4949.265452 C = 5953.693375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.240 3.760 3 N -0.557 5.557 4 C 0.434 3.566 5 N -0.684 5.684 6 C 0.277 3.723 7 C -0.563 4.563 8 H 0.073 0.927 9 C 0.014 3.986 10 N -0.921 5.921 11 Si 0.974 3.026 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.262 1.262 15 C -0.178 4.178 16 Cl -0.047 7.047 17 C 0.044 3.956 18 C -0.163 4.163 19 C 0.301 3.699 20 N -0.460 5.460 21 H 0.102 0.898 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.413 0.587 25 H 0.003 0.997 26 H 0.003 0.997 27 H 0.269 0.731 28 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.947 -12.110 -0.055 12.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.096 3.904 3 N -0.277 5.277 4 C 0.192 3.808 5 N -0.309 5.309 6 C 0.155 3.845 7 C -0.601 4.601 8 H 0.091 0.909 9 C -0.187 4.187 10 N -0.559 5.559 11 Si 0.798 3.202 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.186 1.186 15 C -0.212 4.212 16 Cl -0.019 7.019 17 C 0.017 3.983 18 C -0.173 4.173 19 C -0.013 4.013 20 N -0.137 5.137 21 H 0.120 0.880 22 H 0.107 0.893 23 H 0.104 0.896 24 H 0.251 0.749 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.078 0.922 28 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 1.596 -12.428 -0.053 12.530 hybrid contribution 1.481 0.741 -0.004 1.656 sum 3.078 -11.687 -0.057 12.086 Atomic orbital electron populations 1.20945 0.86491 1.04487 1.04920 1.21575 0.97783 0.85448 0.85634 1.67491 1.06637 1.29527 1.24017 1.18673 0.88525 0.86280 0.87345 1.45427 1.09714 1.03126 1.72637 1.18632 0.90898 0.79662 0.95321 1.21598 0.93857 0.91384 1.53212 0.90894 1.25842 0.96813 1.02082 0.93964 1.70086 1.12919 1.23253 1.49682 0.85321 0.78664 0.77750 0.78511 1.19772 1.20782 1.18565 1.20653 0.86282 0.93668 1.20628 1.98348 1.07583 1.98387 1.97545 1.21110 0.91882 0.97395 0.87943 1.16228 0.92075 0.87383 1.21603 1.24956 0.92578 0.91755 0.92045 1.81268 1.09171 1.11384 1.11892 0.87996 0.89255 0.89611 0.74874 0.97935 0.97923 0.92229 0.80271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.49 9.78 71.24 0.70 -1.79 15 2 C 0.24 6.75 6.82 42.89 0.29 7.04 15 3 N -0.56 -20.02 9.45 -180.26 -1.70 -21.73 15 4 C 0.43 15.33 7.47 133.23 1.00 16.32 15 5 N -0.68 -27.51 5.64 -348.74 -1.97 -29.48 15 6 C 0.28 13.93 5.43 85.63 0.46 14.40 15 7 C -0.56 -29.48 9.28 25.60 0.24 -29.24 15 8 H 0.07 3.58 7.60 -2.91 -0.02 3.56 15 9 C 0.01 0.72 5.46 84.66 0.46 1.19 15 10 N -0.92 -52.53 13.29 21.45 0.28 -52.25 15 11 Si 0.97 41.27 29.54 68.60 2.03 43.30 15 12 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 13 H -0.28 -11.82 7.11 99.48 0.71 -11.11 15 14 H -0.26 -10.55 7.11 99.48 0.71 -9.84 15 15 C -0.18 -4.90 6.32 22.27 0.14 -4.76 15 16 Cl -0.05 -1.16 27.57 -2.72 -0.08 -1.23 15 17 C 0.04 0.98 9.63 22.49 0.22 1.20 15 18 C -0.16 -3.92 5.75 -21.20 -0.12 -4.04 15 19 C 0.30 7.18 13.82 88.33 1.22 8.40 15 20 N -0.46 -12.38 18.54 19.00 0.35 -12.02 15 21 H 0.10 2.01 8.14 -2.39 -0.02 1.99 15 22 H 0.09 1.71 7.08 -2.39 -0.02 1.70 15 23 H 0.09 2.03 8.14 -2.39 -0.02 2.01 15 24 H 0.41 15.21 6.94 -92.70 -0.64 14.57 15 25 H 0.00 0.15 8.14 -2.39 -0.02 0.13 15 26 H 0.00 0.16 8.14 -2.39 -0.02 0.14 15 27 H 0.27 14.38 8.31 -92.71 -0.77 13.61 15 28 H 0.18 2.78 8.06 -2.91 -0.02 2.76 15 Total: -1.00 -59.80 275.66 4.09 -55.72 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 0.57 Total: 8.99 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 4.61 Total: 8.70 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -3.03 Total: -115.48 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.23 kcal Total: -59.80 4.09 -55.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309198743.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.465 kcal (2) G-P(sol) polarization free energy of solvation -59.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds