Wall clock time and date at job start Sun Mar 29 2020 23:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36888 * 120.00191 * 2 1 4 4 H 1.08006 * 120.00222 * 153.84740 * 3 2 1 5 5 C 1.39002 * 120.00255 * 333.84993 * 3 2 1 6 6 N 1.31401 * 119.99851 * 355.85861 * 5 3 2 7 7 Si 1.86805 * 120.00108 * 175.85557 * 5 3 2 8 8 H 1.48506 * 109.46767 * 60.00229 * 7 5 3 9 9 H 1.48497 * 109.46894 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47271 * 300.00264 * 7 5 3 11 11 C 1.34777 * 119.99603 * 179.97438 * 2 1 3 12 12 O 1.21716 * 119.99893 * 185.03078 * 11 2 1 13 13 C 1.46744 * 120.00324 * 5.03527 * 11 2 1 14 14 C 1.33155 * 125.23557 * 187.30492 * 13 11 2 15 15 N 1.36232 * 116.07562 * 179.97438 * 14 13 11 16 16 C 1.39129 * 139.27567 * 180.33903 * 15 14 13 17 17 C 1.34218 * 107.11040 * 180.08118 * 16 15 14 18 18 N 1.33958 * 108.46178 * 359.58629 * 17 16 15 19 19 C 1.32272 * 109.18821 * 0.26632 * 18 17 16 20 20 S 1.75804 * 125.23357 * 7.27022 * 13 11 2 21 21 H 1.08999 * 109.47412 * 215.90943 * 1 2 3 22 22 H 1.08997 * 109.47067 * 335.91450 * 1 2 3 23 23 H 1.09006 * 109.46835 * 95.91157 * 1 2 3 24 24 H 0.97000 * 119.99824 * 179.97438 * 6 5 3 25 25 H 1.07996 * 121.95571 * 359.94954 * 14 13 11 26 26 H 1.08008 * 126.44803 * 359.95166 * 16 15 14 27 27 H 1.08002 * 125.77136 * 179.85259 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1855 0.0000 4 1 3.1466 1.2334 0.4123 5 6 1.5612 2.3277 -0.5305 6 7 0.3819 2.2530 -1.1052 7 14 2.4473 3.9690 -0.4265 8 1 3.7494 3.8742 -1.1342 9 1 1.6148 5.0220 -1.0615 10 1 2.6823 4.3152 0.9983 11 6 2.1388 -1.1672 0.0005 12 8 3.3524 -1.1693 0.0930 13 6 1.4093 -2.4357 -0.1104 14 6 1.9493 -3.6461 0.0168 15 7 1.0968 -4.6997 -0.1213 16 6 1.1238 -6.0902 -0.0813 17 6 -0.1276 -6.5163 -0.3140 18 7 -0.9152 -5.4462 -0.4845 19 6 -0.1872 -4.3478 -0.3703 20 16 -0.3123 -2.5909 -0.4310 21 1 -0.3634 -0.8323 0.6027 22 1 -0.3633 0.9382 0.4194 23 1 -0.3633 -0.1059 -1.0223 24 1 -0.0287 3.0501 -1.4751 25 1 3.0014 -3.7844 0.2173 26 1 1.9893 -6.7102 0.1004 27 1 -0.4464 -7.5474 -0.3525 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336403275.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:33 Heat of formation + Delta-G solvation = 80.036974 kcal Electronic energy + Delta-G solvation = -15728.839433 eV Core-core repulsion = 13001.834948 eV Total energy + Delta-G solvation = -2727.004485 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.047 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.29957 -38.80224 -36.03129 -34.89410 -32.01171 -30.44296 -29.08721 -26.80203 -25.29054 -23.65889 -22.22376 -20.89789 -18.74314 -18.15899 -17.20161 -16.25024 -15.80450 -15.43382 -15.04722 -14.63120 -14.21999 -13.88057 -13.72618 -13.18118 -12.65412 -12.23107 -11.91832 -11.52011 -11.40520 -11.15349 -10.75728 -10.59517 -10.50240 -10.00722 -9.92053 -9.24528 -8.92672 -8.60954 -8.03789 -7.33827 -6.60655 -4.16916 0.94768 1.31511 1.96503 2.36356 2.79704 3.06875 3.09462 3.12008 3.15288 3.89041 3.96788 4.45710 4.83442 4.87671 4.97085 5.31241 5.44748 5.64119 5.76376 5.93646 6.30795 6.49879 6.69023 6.91996 7.05287 7.27848 7.81238 7.92985 8.15137 8.84443 9.02263 9.59169 10.40501 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.055478 B = 0.006008 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.586895 B = 4659.380226 C = 5111.413843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.420 5.420 3 C -0.301 4.301 4 H 0.107 0.893 5 C 0.033 3.967 6 N -0.872 5.872 7 Si 0.938 3.062 8 H -0.269 1.269 9 H -0.281 1.281 10 H -0.270 1.270 11 C 0.504 3.496 12 O -0.576 6.576 13 C -0.197 4.197 14 C 0.069 3.931 15 N -0.396 5.396 16 C -0.071 4.071 17 C 0.012 3.988 18 N -0.474 5.474 19 C 0.106 3.894 20 S 0.231 5.769 21 H 0.041 0.959 22 H 0.109 0.891 23 H 0.067 0.933 24 H 0.276 0.724 25 H 0.187 0.813 26 H 0.178 0.822 27 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.026 -8.223 1.709 8.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.135 5.135 3 C -0.429 4.429 4 H 0.124 0.876 5 C -0.172 4.172 6 N -0.509 5.509 7 Si 0.764 3.236 8 H -0.194 1.194 9 H -0.206 1.206 10 H -0.195 1.195 11 C 0.292 3.708 12 O -0.462 6.462 13 C -0.320 4.320 14 C -0.064 4.064 15 N -0.074 5.074 16 C -0.203 4.203 17 C -0.138 4.138 18 N -0.197 5.197 19 C -0.257 4.257 20 S 0.483 5.517 21 H 0.058 0.942 22 H 0.127 0.873 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.203 0.797 26 H 0.195 0.805 27 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -3.431 -7.201 1.282 8.079 hybrid contribution 2.177 -0.406 0.281 2.232 sum -1.255 -7.607 1.563 7.867 Atomic orbital electron populations 1.21887 0.81184 1.01121 1.01733 1.43443 1.05559 1.04685 1.59828 1.19753 1.01569 0.84075 1.37486 0.87583 1.25538 0.96322 1.00640 0.94684 1.69921 1.15220 1.30858 1.34918 0.85797 0.79248 0.79611 0.78985 1.19410 1.20592 1.19491 1.16448 0.86584 0.81237 0.86555 1.90680 1.12456 1.85833 1.57260 1.24058 0.97498 0.98335 1.12120 1.20349 0.97558 0.83846 1.04684 1.43654 1.08698 1.06502 1.48501 1.22741 1.01644 0.79662 1.16297 1.22339 0.89311 0.98353 1.03799 1.70577 1.31325 0.95086 1.22757 1.28079 0.84107 1.04357 1.09185 1.85817 1.03378 0.85103 1.77379 0.94177 0.87322 0.91480 0.91365 0.79656 0.80455 0.80250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.84 7.11 59.85 0.43 2.27 15 2 N -0.42 -10.24 3.01 -123.67 -0.37 -10.61 15 3 C -0.30 -7.81 9.25 -15.01 -0.14 -7.95 15 4 H 0.11 2.84 7.41 -52.48 -0.39 2.45 15 5 C 0.03 0.81 5.21 -17.45 -0.09 0.72 15 6 N -0.87 -21.29 10.50 55.50 0.58 -20.71 15 7 Si 0.94 19.21 29.56 -169.99 -5.02 14.18 15 8 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 9 H -0.28 -5.62 7.11 56.52 0.40 -5.22 15 10 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 11 C 0.50 12.05 7.58 -12.82 -0.10 11.95 15 12 O -0.58 -15.29 16.48 5.17 0.09 -15.21 15 13 C -0.20 -3.92 6.09 -37.92 -0.23 -4.15 15 14 C 0.07 1.23 10.94 -17.37 -0.19 1.04 15 15 N -0.40 -6.76 3.14 -63.48 -0.20 -6.96 15 16 C -0.07 -0.99 12.03 -15.65 -0.19 -1.18 15 17 C 0.01 0.17 11.82 -18.04 -0.21 -0.04 15 18 N -0.47 -8.48 11.32 -13.52 -0.15 -8.64 15 19 C 0.11 1.94 8.92 -88.52 -0.79 1.15 15 20 S 0.23 4.09 18.12 -107.50 -1.95 2.14 15 21 H 0.04 0.76 5.02 -26.43 -0.13 0.62 15 22 H 0.11 2.38 6.54 -51.93 -0.34 2.04 15 23 H 0.07 1.43 7.31 -51.93 -0.38 1.05 15 24 H 0.28 6.36 8.31 -40.82 -0.34 6.02 15 25 H 0.19 3.00 7.98 -52.49 -0.42 2.58 15 26 H 0.18 1.76 8.06 -52.48 -0.42 1.34 15 27 H 0.18 1.82 8.06 -52.49 -0.42 1.39 15 LS Contribution 251.10 15.07 3.78 3.78 Total: -1.00 -29.74 251.10 -6.40 -36.14 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -1.64 Total: 2.06 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -1.51 Total: 3.82 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -0.14 Total: -46.92 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: 0.09 Total: -15.21 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.18 kcal Atomic # 16 Polarization: 4.09 SS G_CDS: -1.95 Total: 2.14 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.74 -6.40 -36.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336403275.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.179 kcal (2) G-P(sol) polarization free energy of solvation -29.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds