Wall clock time and date at job start Sun Mar 29 2020 22:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47038 * 2 1 4 4 H 1.08998 * 110.05499 * 53.58535 * 3 2 1 5 5 C 1.54267 * 110.03137 * 292.16780 * 3 2 1 6 6 C 1.54891 * 104.19324 * 217.10706 * 5 3 2 7 7 C 1.54888 * 102.75120 * 37.94011 * 6 5 3 8 8 C 1.53876 * 110.03160 * 175.00197 * 3 2 1 9 9 H 1.08999 * 110.02894 * 359.94859 * 8 3 2 10 10 N 1.46901 * 110.03012 * 238.56992 * 8 3 2 11 11 C 1.46896 * 110.99933 * 154.99682 * 10 8 3 12 12 C 1.53000 * 109.47029 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47440 * 305.00074 * 12 11 10 14 14 C 1.47200 * 109.47045 * 65.00269 * 12 11 10 15 15 N 5.92978 * 114.72854 * 67.60556 * 2 1 3 16 16 C 1.53005 * 109.47320 * 185.00603 * 12 11 10 17 17 C 1.50696 * 109.47262 * 175.00519 * 16 12 11 18 18 H 1.07997 * 120.00193 * 359.97438 * 17 16 12 19 19 C 1.37875 * 119.99895 * 179.97438 * 17 16 12 20 20 N 1.31513 * 119.99987 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99990 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47382 * 90.00372 * 21 19 17 23 23 H 1.48501 * 109.46913 * 210.00215 * 21 19 17 24 24 H 1.48495 * 109.47157 * 329.99836 * 21 19 17 25 25 H 1.08998 * 109.47143 * 300.00136 * 1 2 3 26 26 H 1.09002 * 109.47375 * 60.00280 * 1 2 3 27 27 H 1.09004 * 109.46847 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47143 * 239.99864 * 2 1 3 29 29 H 1.08998 * 109.46916 * 120.00308 * 2 1 3 30 30 H 1.09004 * 110.48597 * 335.78345 * 5 3 2 31 31 H 1.08994 * 110.48679 * 98.42871 * 5 3 2 32 32 H 1.09005 * 110.75269 * 279.62515 * 6 5 3 33 33 H 1.09004 * 110.91555 * 156.33330 * 6 5 3 34 34 H 1.09000 * 110.48622 * 203.37816 * 7 6 5 35 35 H 1.08999 * 110.48451 * 80.73628 * 7 6 5 36 36 H 1.00904 * 111.00436 * 31.04466 * 10 8 3 37 37 H 1.08994 * 109.47753 * 300.00137 * 11 10 8 38 38 H 1.09003 * 109.47091 * 60.00377 * 11 10 8 39 39 H 1.09009 * 109.46513 * 294.99892 * 16 12 11 40 40 H 1.08993 * 109.47131 * 54.99661 * 16 12 11 41 41 H 0.97005 * 120.00230 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9975 0.8240 5 6 1.7005 2.1230 -1.3422 6 6 2.9289 3.0200 -1.6346 7 6 4.1124 2.1496 -1.1440 8 6 3.5735 1.4594 0.1259 9 1 3.9542 0.4400 0.1880 10 7 3.9720 2.2185 1.3188 11 6 5.2897 1.7853 1.8025 12 6 5.6699 2.5970 3.0424 13 1 5.6206 3.6607 2.8096 14 6 4.7336 2.2901 4.1359 15 7 4.0105 2.0520 4.9798 16 6 7.0929 2.2348 3.4726 17 6 7.5125 3.1205 4.6173 18 1 6.8325 3.8675 4.9995 19 6 8.7645 2.9773 5.1766 20 7 9.5927 2.0681 4.7109 21 14 9.2849 4.0758 6.5951 22 1 8.9098 3.4348 7.8811 23 1 10.7558 4.2759 6.5523 24 1 8.6031 5.3899 6.4795 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.5772 1.3772 -2.1276 31 1 0.7998 2.7291 -1.2456 32 1 2.8720 3.9495 -1.0679 33 1 3.0161 3.2247 -2.7017 34 1 4.9718 2.7752 -0.9028 35 1 4.3785 1.4082 -1.8974 36 1 3.2766 2.1410 2.0459 37 1 5.2529 0.7264 2.0583 38 1 6.0337 1.9449 1.0220 39 1 7.1221 1.1924 3.7902 40 1 7.7737 2.3782 2.6336 41 1 10.4735 1.9671 5.1047 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336728961.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:57 Heat of formation + Delta-G solvation = -28.619814 kcal Electronic energy + Delta-G solvation = -18169.276561 eV Core-core repulsion = 15467.732688 eV Total energy + Delta-G solvation = -2701.543874 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.13748 -38.42707 -36.03335 -35.14169 -33.88338 -32.83890 -29.08237 -28.43836 -27.19135 -24.45473 -23.58619 -23.15111 -21.01388 -20.47777 -18.51187 -18.24976 -17.17851 -16.63980 -16.17476 -15.98365 -15.37471 -14.97332 -14.77423 -14.58548 -14.24004 -13.96718 -13.87989 -13.64705 -13.50117 -13.09046 -12.85926 -12.69763 -12.54502 -12.47702 -12.24056 -12.20585 -11.83428 -11.75611 -11.70029 -11.52155 -11.36692 -11.30517 -11.26708 -11.04907 -10.56242 -9.33677 -8.20042 -6.28493 1.39821 1.41680 1.51290 1.92147 1.94370 2.41107 3.14910 3.17980 3.24096 3.67766 3.75869 3.98998 4.18671 4.33458 4.36200 4.39751 4.49120 4.59992 4.67655 4.74587 4.80976 4.84855 4.90977 4.94456 4.96673 5.07482 5.14475 5.17762 5.21717 5.31760 5.34083 5.42026 5.46330 5.49456 5.61668 5.63438 5.78611 6.11645 6.22917 6.39677 6.73726 6.86338 7.40157 8.90946 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.034237 B = 0.004175 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.631900 B = 6705.751324 C = 7073.829838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.093 4.093 4 H 0.066 0.934 5 C -0.109 4.109 6 C -0.117 4.117 7 C -0.114 4.114 8 C 0.081 3.919 9 H 0.043 0.957 10 N -0.683 5.683 11 C 0.079 3.921 12 C 0.020 3.980 13 H 0.122 0.878 14 C 0.252 3.748 15 N -0.505 5.505 16 C 0.038 3.962 17 C -0.540 4.540 18 H 0.054 0.946 19 C 0.012 3.988 20 N -0.924 5.924 21 Si 0.949 3.051 22 H -0.284 1.284 23 H -0.278 1.278 24 H -0.264 1.264 25 H 0.047 0.953 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.333 0.667 37 H 0.029 0.971 38 H 0.102 0.898 39 H -0.001 1.001 40 H 0.036 0.964 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.053 -1.382 -15.618 21.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.112 4.112 4 H 0.084 0.916 5 C -0.147 4.147 6 C -0.155 4.155 7 C -0.152 4.152 8 C -0.028 4.028 9 H 0.061 0.939 10 N -0.314 5.314 11 C -0.051 4.051 12 C -0.002 4.002 13 H 0.140 0.860 14 C -0.064 4.064 15 N -0.182 5.182 16 C 0.000 4.000 17 C -0.578 4.578 18 H 0.072 0.928 19 C -0.187 4.187 20 N -0.563 5.563 21 Si 0.774 3.226 22 H -0.210 1.210 23 H -0.203 1.203 24 H -0.188 1.188 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.151 0.849 37 H 0.047 0.953 38 H 0.120 0.880 39 H 0.018 0.982 40 H 0.054 0.946 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.727 -1.282 -14.689 20.840 hybrid contribution 0.755 -0.414 1.374 1.622 sum -13.973 -1.696 -13.315 19.375 Atomic orbital electron populations 1.21761 0.95023 1.01869 1.02018 1.21637 0.96647 0.95503 1.01657 1.22017 0.93572 0.96450 0.99160 0.91596 1.22362 0.98055 0.98512 0.95733 1.22413 0.94227 0.98057 1.00767 1.22393 0.98539 0.98914 0.95326 1.22344 0.94887 0.94736 0.90863 0.93860 1.60720 1.03594 1.58584 1.08522 1.21943 0.92497 0.95655 0.94996 1.19225 0.91013 1.03130 0.86850 0.86005 1.29680 0.91836 0.91185 0.93737 1.81048 1.14176 1.11381 1.11608 1.18985 0.89109 0.95610 0.96326 1.21556 0.99810 1.18973 1.17455 0.92780 1.25717 0.96882 0.96720 0.99423 1.70033 1.08320 1.34938 1.43058 0.85690 0.77695 0.79687 0.79502 1.20985 1.20295 1.18823 0.93423 0.91663 0.92378 0.91076 0.93519 0.90660 0.91433 0.92200 0.90808 0.91624 0.90873 0.84904 0.95270 0.88013 0.98238 0.94574 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.77 71.98 0.70 -1.53 16 2 C -0.12 -2.00 5.06 30.59 0.15 -1.84 16 3 C -0.09 -1.74 2.61 -10.07 -0.03 -1.76 16 4 H 0.07 1.39 7.47 -2.39 -0.02 1.37 16 5 C -0.11 -1.70 5.53 31.67 0.18 -1.52 16 6 C -0.12 -1.99 6.91 31.89 0.22 -1.77 16 7 C -0.11 -2.19 6.50 31.67 0.21 -1.98 16 8 C 0.08 1.74 2.90 45.64 0.13 1.88 16 9 H 0.04 0.97 7.34 -2.39 -0.02 0.96 16 10 N -0.68 -17.60 6.26 -487.85 -3.05 -20.65 16 11 C 0.08 2.32 4.94 86.30 0.43 2.75 16 12 C 0.02 0.72 2.42 -12.60 -0.03 0.69 16 13 H 0.12 4.22 8.14 -2.39 -0.02 4.20 16 14 C 0.25 10.19 12.98 89.44 1.16 11.36 16 15 N -0.50 -22.06 18.54 20.01 0.37 -21.69 16 16 C 0.04 1.80 4.42 29.85 0.13 1.93 16 17 C -0.54 -28.90 8.60 25.60 0.22 -28.68 16 18 H 0.05 2.87 7.59 -2.91 -0.02 2.84 16 19 C 0.01 0.64 5.46 84.65 0.46 1.10 16 20 N -0.92 -53.40 13.29 21.45 0.28 -53.11 16 21 Si 0.95 43.69 29.54 68.60 2.03 45.72 16 22 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 24 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 0.85 7.51 -2.39 -0.02 0.83 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 1.10 8.00 -2.39 -0.02 1.08 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 1.02 7.76 -2.38 -0.02 1.00 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.07 1.42 7.85 -2.39 -0.02 1.40 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.33 9.10 7.08 -89.69 -0.64 8.47 16 37 H 0.03 0.88 8.06 -2.39 -0.02 0.86 16 38 H 0.10 2.78 7.95 -2.39 -0.02 2.76 16 39 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 Total: -1.00 -60.22 333.40 3.92 -56.31 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.35 Total: 12.82 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 3.94 Total: -19.39 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -2.40 Total: -95.45 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -60.22 3.92 -56.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336728961.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.686 kcal (2) G-P(sol) polarization free energy of solvation -60.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds