Wall clock time and date at job start Sun Mar 29 2020 22:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47123 * 2 1 4 4 H 1.08996 * 110.01620 * 57.70452 * 3 2 1 5 5 C 1.54267 * 110.02884 * 296.31461 * 3 2 1 6 6 C 1.54894 * 104.19019 * 217.10372 * 5 3 2 7 7 C 1.54885 * 102.75053 * 37.94671 * 6 5 3 8 8 C 1.53874 * 110.03025 * 179.14588 * 3 2 1 9 9 H 1.09003 * 110.03308 * 238.56493 * 8 3 2 10 10 N 1.46899 * 110.03692 * 0.02562 * 8 3 2 11 11 C 1.46896 * 111.00125 * 193.34021 * 10 8 3 12 12 C 1.52997 * 109.47351 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.47269 * 54.99676 * 12 11 10 14 14 C 1.47202 * 109.46846 * 294.99684 * 12 11 10 15 15 N 4.85523 * 133.07994 * 139.76618 * 2 1 3 16 16 C 1.53001 * 109.47492 * 175.00039 * 12 11 10 17 17 C 1.50697 * 109.47177 * 184.99996 * 16 12 11 18 18 H 1.08004 * 120.00075 * 359.97438 * 17 16 12 19 19 C 1.37878 * 119.99823 * 180.02562 * 17 16 12 20 20 N 1.31514 * 119.99972 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00218 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47104 * 90.00479 * 21 19 17 23 23 H 1.48493 * 109.47387 * 210.00770 * 21 19 17 24 24 H 1.48500 * 109.47067 * 330.00651 * 21 19 17 25 25 H 1.09003 * 109.46902 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.46956 * 299.99605 * 1 2 3 27 27 H 1.08995 * 109.47218 * 60.00418 * 1 2 3 28 28 H 1.09003 * 109.47541 * 120.00132 * 2 1 3 29 29 H 1.09000 * 109.47274 * 239.99851 * 2 1 3 30 30 H 1.08993 * 110.48855 * 335.78082 * 5 3 2 31 31 H 1.08996 * 110.48173 * 98.42748 * 5 3 2 32 32 H 1.09000 * 110.75458 * 156.26022 * 6 5 3 33 33 H 1.09000 * 110.75285 * 279.43978 * 6 5 3 34 34 H 1.08995 * 110.49012 * 80.73478 * 7 6 5 35 35 H 1.09003 * 110.48445 * 203.24601 * 7 6 5 36 36 H 1.00906 * 110.99600 * 317.28754 * 10 8 3 37 37 H 1.09000 * 109.47210 * 299.99755 * 11 10 8 38 38 H 1.09007 * 109.47356 * 59.99323 * 11 10 8 39 39 H 1.09004 * 109.46510 * 304.99945 * 16 12 11 40 40 H 1.08997 * 109.47086 * 64.99857 * 16 12 11 41 41 H 0.96998 * 120.00109 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6485 1.9767 0.8657 5 6 1.6103 2.1549 -1.2992 6 6 2.8167 3.0598 -1.6529 7 6 4.0301 2.1787 -1.2653 8 6 3.5785 1.4576 0.0216 9 1 3.9344 1.9997 0.8977 10 7 4.0952 0.0825 0.0350 11 6 5.5249 0.0606 0.3717 12 6 6.0256 -1.3851 0.3765 13 1 5.7975 -1.8518 -0.5818 14 6 5.3598 -2.1313 1.4566 15 7 4.8462 -2.7073 2.2906 16 6 7.5386 -1.4001 0.6038 17 6 8.0502 -2.8127 0.4865 18 1 7.3647 -3.6192 0.2717 19 6 9.3932 -3.0757 0.6544 20 7 9.8398 -4.3084 0.5515 21 14 10.5787 -1.6809 1.0266 22 1 10.6844 -1.5002 2.4967 23 1 11.9164 -2.0065 0.4703 24 1 10.0774 -0.4271 0.4085 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.4332 1.4282 -2.0920 31 1 0.7188 2.7577 -1.1267 32 1 2.8294 3.2874 -2.7187 33 1 2.7975 3.9767 -1.0638 34 1 4.2437 1.4559 -2.0527 35 1 4.9051 2.7989 -1.0705 36 1 3.5654 -0.4965 0.6693 37 1 6.0813 0.6357 -0.3684 38 1 5.6726 0.4993 1.3586 39 1 8.0246 -0.7742 -0.1447 40 1 7.7603 -1.0149 1.5990 41 1 10.7846 -4.4933 0.6692 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336728976.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:00 Heat of formation + Delta-G solvation = -1.016330 kcal Electronic energy + Delta-G solvation = -18380.935877 eV Core-core repulsion = 15680.588980 eV Total energy + Delta-G solvation = -2700.346897 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.40079 -36.98605 -34.56110 -33.29297 -33.18240 -31.52928 -28.04725 -27.63662 -25.78887 -23.17934 -22.56419 -21.47246 -20.62716 -18.89066 -16.92183 -16.85683 -15.98725 -15.80569 -15.17626 -14.52032 -14.40778 -13.86354 -13.47804 -13.36954 -13.16148 -12.68528 -12.55116 -12.33164 -12.20857 -11.80843 -11.52190 -11.42894 -11.31673 -11.19247 -11.08955 -10.84685 -10.83749 -10.65684 -10.58086 -10.43409 -10.28355 -9.97198 -9.73212 -9.32164 -8.61241 -8.32276 -6.10189 -4.10744 3.27046 3.34764 3.35149 3.53137 3.57069 4.21469 4.38658 4.45081 4.50780 4.71764 4.75899 5.11738 5.13503 5.23088 5.24521 5.35818 5.42105 5.49152 5.51856 5.56751 5.61156 5.67065 5.78737 5.83692 5.94333 5.96915 6.01594 6.04503 6.10323 6.19344 6.22915 6.32675 6.37531 6.38376 6.96223 7.09956 7.17708 7.44998 7.64426 8.34070 8.43102 8.93411 9.49719 11.02971 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.029403 B = 0.004813 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.070826 B = 5816.213112 C = 6489.327856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.090 4.090 4 H 0.067 0.933 5 C -0.113 4.113 6 C -0.125 4.125 7 C -0.115 4.115 8 C 0.084 3.916 9 H 0.040 0.960 10 N -0.685 5.685 11 C 0.063 3.937 12 C 0.017 3.983 13 H 0.116 0.884 14 C 0.238 3.762 15 N -0.469 5.469 16 C -0.004 4.004 17 C -0.528 4.528 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.897 5.897 21 Si 0.878 3.122 22 H -0.278 1.278 23 H -0.286 1.286 24 H -0.262 1.262 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.342 0.658 37 H 0.090 0.910 38 H 0.032 0.968 39 H 0.039 0.961 40 H 0.018 0.982 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.695 15.928 -4.456 22.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.109 4.109 4 H 0.085 0.915 5 C -0.151 4.151 6 C -0.163 4.163 7 C -0.153 4.153 8 C -0.026 4.026 9 H 0.058 0.942 10 N -0.319 5.319 11 C -0.067 4.067 12 C -0.005 4.005 13 H 0.134 0.866 14 C -0.079 4.079 15 N -0.146 5.146 16 C -0.043 4.043 17 C -0.566 4.566 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.535 5.535 21 Si 0.705 3.295 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.187 1.187 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.163 0.837 37 H 0.108 0.892 38 H 0.051 0.949 39 H 0.057 0.943 40 H 0.036 0.964 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.201 14.911 -3.850 21.639 hybrid contribution 1.047 0.901 0.982 1.695 sum -14.155 15.812 -2.868 21.415 Atomic orbital electron populations 1.21807 0.96308 1.01447 1.01395 1.21528 0.95012 0.95928 1.02842 1.21894 0.94201 0.96602 0.98216 0.91474 1.22383 0.97423 0.98192 0.97087 1.22461 0.95163 0.97875 1.00821 1.22436 0.97149 0.98093 0.97637 1.22160 0.93839 0.89288 0.97268 0.94182 1.60906 1.03393 1.10095 1.57534 1.22128 0.88792 0.95937 0.99880 1.19078 0.96629 0.91449 0.93343 0.86612 1.29213 0.91725 0.93049 0.93882 1.81057 1.12195 1.09658 1.11708 1.19630 0.87950 0.99267 0.97446 1.21039 0.94050 0.91829 1.49636 0.90791 1.24989 0.98259 0.95410 0.94441 1.69906 1.14971 1.19021 1.49642 0.86814 0.80625 0.83161 0.78929 1.20336 1.21237 1.18694 0.92892 0.93282 0.92717 0.92403 0.90197 0.91183 0.92197 0.91646 0.91963 0.89993 0.92099 0.83676 0.89161 0.94926 0.94294 0.96352 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.72 37.16 0.36 -0.99 16 2 C -0.12 -1.18 4.10 -26.73 -0.11 -1.29 16 3 C -0.09 -0.87 2.98 -89.50 -0.27 -1.14 16 4 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 5 C -0.11 -0.96 5.34 -25.07 -0.13 -1.10 16 6 C -0.13 -1.05 6.91 -24.74 -0.17 -1.22 16 7 C -0.12 -1.14 5.90 -25.07 -0.15 -1.29 16 8 C 0.08 0.92 3.21 -66.59 -0.21 0.70 16 9 H 0.04 0.45 8.01 -51.93 -0.42 0.04 16 10 N -0.69 -8.69 5.39 -105.54 -0.57 -9.26 16 11 C 0.06 0.88 4.94 -3.83 -0.02 0.86 16 12 C 0.02 0.30 2.42 -93.41 -0.23 0.07 16 13 H 0.12 2.02 8.14 -51.93 -0.42 1.59 16 14 C 0.24 4.79 12.98 -20.75 -0.27 4.52 16 15 N -0.47 -10.27 18.54 42.16 0.78 -9.49 16 16 C 0.00 -0.08 3.49 -27.88 -0.10 -0.18 16 17 C -0.53 -14.29 9.15 -34.44 -0.32 -14.60 16 18 H 0.07 2.20 7.84 -52.48 -0.41 1.79 16 19 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 20 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16 21 Si 0.88 20.74 27.47 -169.99 -4.67 16.07 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.44 7.33 -51.93 -0.38 0.06 16 28 H 0.06 0.66 6.57 -51.93 -0.34 0.31 16 29 H 0.08 0.89 7.80 -51.93 -0.41 0.49 16 30 H 0.07 0.62 7.78 -51.93 -0.40 0.22 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.89 8.05 -51.93 -0.42 0.48 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.34 4.58 5.13 -39.29 -0.20 4.37 16 37 H 0.09 1.17 7.70 -51.93 -0.40 0.77 16 38 H 0.03 0.46 8.10 -51.93 -0.42 0.04 16 39 H 0.04 0.79 7.20 -51.93 -0.37 0.42 16 40 H 0.02 0.40 7.57 -51.93 -0.39 0.00 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 325.24 15.07 4.90 4.90 Total: -1.00 -29.88 325.24 -7.60 -37.48 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -7.11 Total: 0.45 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -1.71 Total: -13.74 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.99 Total: -45.17 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.88 -7.60 -37.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336728976.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.465 kcal (2) G-P(sol) polarization free energy of solvation -29.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds