Wall clock time and date at job start Sun Mar 29 2020 22:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 H 1.08994 * 110.01978 * 54.29909 * 3 2 1 5 5 C 1.54266 * 110.03129 * 292.90463 * 3 2 1 6 6 C 1.54962 * 104.15995 * 217.13907 * 5 3 2 7 7 C 1.54895 * 102.77732 * 37.88686 * 6 5 3 8 8 C 1.53875 * 110.02851 * 175.68754 * 3 2 1 9 9 H 1.08999 * 110.03385 * 0.02562 * 8 3 2 10 10 N 1.46903 * 110.03180 * 238.61549 * 8 3 2 11 11 C 1.46903 * 110.99695 * 155.00188 * 10 8 3 12 12 C 1.53001 * 109.46687 * 179.97438 * 11 10 8 13 13 H 1.09002 * 109.47184 * 55.00113 * 12 11 10 14 14 C 1.47198 * 109.47578 * 295.00052 * 12 11 10 15 15 N 7.16942 * 128.49134 * 24.84874 * 2 1 3 16 16 C 1.53000 * 109.46986 * 174.99710 * 12 11 10 17 17 C 1.50702 * 109.47264 * 184.99896 * 16 12 11 18 18 H 1.08000 * 120.00018 * 0.02562 * 17 16 12 19 19 C 1.37874 * 119.99873 * 180.02562 * 17 16 12 20 20 N 1.31510 * 120.00372 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99702 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47279 * 90.00145 * 21 19 17 23 23 H 1.48505 * 109.46742 * 209.99863 * 21 19 17 24 24 H 1.48501 * 109.47248 * 329.99857 * 21 19 17 25 25 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 27 27 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 28 28 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 29 29 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 30 30 H 1.09001 * 110.48713 * 335.78613 * 5 3 2 31 31 H 1.08997 * 110.48542 * 98.42835 * 5 3 2 32 32 H 1.09006 * 110.72092 * 279.57749 * 6 5 3 33 33 H 1.09001 * 110.92824 * 156.29633 * 6 5 3 34 34 H 1.09005 * 110.48671 * 203.40648 * 7 6 5 35 35 H 1.08998 * 110.48218 * 80.76699 * 7 6 5 36 36 H 1.00896 * 111.00304 * 278.95719 * 10 8 3 37 37 H 1.09000 * 109.47255 * 299.99550 * 11 10 8 38 38 H 1.08996 * 109.47064 * 60.00379 * 11 10 8 39 39 H 1.08993 * 109.47346 * 305.00316 * 16 12 11 40 40 H 1.09000 * 109.47056 * 65.00457 * 16 12 11 41 41 H 0.96999 * 120.00188 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6008 1.9936 0.8316 5 6 1.6841 2.1288 -1.3351 6 6 2.9102 3.0267 -1.6383 7 6 4.0992 2.1543 -1.1646 8 6 3.5747 1.4591 0.1087 9 1 3.9563 0.4394 0.1610 10 7 3.9867 2.2125 1.3006 11 6 5.3099 1.7771 1.7672 12 6 5.7041 2.5830 3.0066 13 1 4.9246 2.4909 3.7629 14 6 5.8670 3.9992 2.6398 15 7 5.9922 5.0920 2.3581 16 6 7.0231 2.0459 3.5658 17 6 7.3490 2.7566 4.8542 18 1 6.6818 3.5151 5.2362 19 6 8.4989 2.4384 5.5452 20 7 9.3115 1.5151 5.0798 21 14 8.9024 3.3188 7.1426 22 1 8.3085 2.5743 8.2819 23 1 10.3763 3.3880 7.3109 24 1 8.3434 4.6941 7.1047 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.5513 1.3864 -2.1220 31 1 0.7846 2.7344 -1.2249 32 1 2.8598 3.9539 -1.0673 33 1 2.9854 3.2356 -2.7054 34 1 4.9613 2.7791 -0.9306 35 1 4.3568 1.4160 -1.9239 36 1 3.9747 3.2056 1.1228 37 1 5.2759 0.7170 2.0183 38 1 6.0449 1.9406 0.9791 39 1 6.9292 0.9766 3.7544 40 1 7.8211 2.2188 2.8437 41 1 10.1207 1.2915 5.5658 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336728979.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:02 Heat of formation + Delta-G solvation = -13.995851 kcal Electronic energy + Delta-G solvation = -18175.404344 eV Core-core repulsion = 15474.494613 eV Total energy + Delta-G solvation = -2700.909731 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.27774 -36.92065 -34.61638 -33.51747 -32.82896 -31.21908 -27.75547 -27.63108 -25.76028 -23.04467 -22.28554 -21.79945 -20.42667 -19.61293 -16.68827 -16.55328 -15.86374 -15.65919 -14.68202 -14.60608 -14.29614 -14.09260 -13.45726 -13.14991 -12.88263 -12.83290 -12.70612 -12.19362 -12.04018 -11.76618 -11.66252 -11.30894 -11.15382 -11.11781 -10.97611 -10.88954 -10.75600 -10.68045 -10.56691 -10.46703 -10.44635 -10.24685 -9.51579 -9.21214 -8.44944 -8.23643 -6.08956 -4.12031 3.29852 3.36550 3.41249 3.58347 3.63918 4.22118 4.42534 4.47463 4.59091 4.81204 4.86516 5.04852 5.14906 5.23479 5.29085 5.41420 5.46601 5.55106 5.55803 5.63701 5.64708 5.73134 5.76354 5.79770 5.89175 5.95068 6.01253 6.11873 6.13761 6.19792 6.27498 6.36068 6.47478 6.56755 7.23038 7.44292 7.50846 7.54679 7.86207 8.24021 8.41325 8.92595 9.53449 11.01967 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.032686 B = 0.004171 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.426930 B = 6710.954707 C = 7048.344606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.084 4.084 4 H 0.085 0.915 5 C -0.119 4.119 6 C -0.125 4.125 7 C -0.156 4.156 8 C 0.086 3.914 9 H 0.081 0.919 10 N -0.684 5.684 11 C 0.067 3.933 12 C 0.006 3.994 13 H 0.110 0.890 14 C 0.242 3.758 15 N -0.478 5.478 16 C 0.032 3.968 17 C -0.526 4.526 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.891 3.109 22 H -0.278 1.278 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.338 0.662 37 H 0.090 0.910 38 H 0.034 0.966 39 H 0.040 0.960 40 H 0.024 0.976 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.829 -4.207 -12.345 19.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.103 4.103 4 H 0.103 0.897 5 C -0.157 4.157 6 C -0.162 4.162 7 C -0.195 4.195 8 C -0.024 4.024 9 H 0.099 0.901 10 N -0.314 5.314 11 C -0.063 4.063 12 C -0.016 4.016 13 H 0.128 0.872 14 C -0.075 4.075 15 N -0.155 5.155 16 C -0.006 4.006 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.719 3.281 22 H -0.204 1.204 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.156 0.844 37 H 0.109 0.891 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.042 0.958 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.812 -3.059 -12.280 19.482 hybrid contribution 0.997 0.474 0.378 1.167 sum -13.815 -2.585 -11.902 18.417 Atomic orbital electron populations 1.21777 0.96134 1.01215 1.01733 1.21596 0.95608 0.96171 1.01856 1.21864 0.94538 0.96085 0.97781 0.89712 1.22467 0.97611 0.98372 0.97208 1.22481 0.94895 0.98303 1.00549 1.23092 0.98120 0.99389 0.98938 1.22274 0.94787 0.97739 0.87627 0.90059 1.60727 1.28524 1.09086 1.33073 1.22109 0.88450 1.00302 0.95458 1.19339 1.03597 0.81577 0.97073 0.87181 1.29311 0.91274 0.95112 0.91776 1.81007 1.10831 1.12897 1.10735 1.19161 0.88279 0.97216 0.95976 1.21153 1.07046 1.21426 1.06802 0.92514 1.24949 0.96106 0.95044 0.97852 1.69936 1.12728 1.31190 1.39217 0.86596 0.77531 0.80226 0.83761 1.20420 1.21173 1.19880 0.93128 0.92701 0.92940 0.92383 0.91629 0.91775 0.91949 0.91660 0.91944 0.91745 0.91389 0.84377 0.89145 0.94811 0.94224 0.95789 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.76 37.16 0.36 -0.85 16 2 C -0.11 -1.02 5.06 -26.73 -0.14 -1.16 16 3 C -0.08 -0.83 2.73 -89.50 -0.24 -1.08 16 4 H 0.08 0.95 7.92 -51.93 -0.41 0.54 16 5 C -0.12 -1.06 5.50 -25.03 -0.14 -1.20 16 6 C -0.12 -1.22 6.91 -24.70 -0.17 -1.39 16 7 C -0.16 -1.68 6.25 -25.07 -0.16 -1.83 16 8 C 0.09 0.96 2.88 -66.59 -0.19 0.77 16 9 H 0.08 0.91 7.34 -51.93 -0.38 0.53 16 10 N -0.68 -9.09 6.11 -105.54 -0.64 -9.73 16 11 C 0.07 1.00 4.95 -3.82 -0.02 0.98 16 12 C 0.01 0.11 2.42 -93.41 -0.23 -0.11 16 13 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 14 C 0.24 4.93 12.97 -20.78 -0.27 4.66 16 15 N -0.48 -10.49 18.53 42.13 0.78 -9.71 16 16 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 17 C -0.53 -14.10 8.60 -34.44 -0.30 -14.39 16 18 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 21 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.39 7.48 -51.93 -0.39 0.01 16 28 H 0.06 0.49 8.02 -51.93 -0.42 0.07 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.53 7.77 -51.93 -0.40 0.13 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.79 7.82 -51.93 -0.41 0.38 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.34 4.75 7.51 -39.29 -0.30 4.45 16 37 H 0.09 1.27 8.07 -51.93 -0.42 0.85 16 38 H 0.03 0.51 7.95 -51.93 -0.41 0.10 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 333.90 15.07 5.03 5.03 Total: -1.00 -28.73 333.90 -8.12 -36.85 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -7.29 Total: -0.58 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -1.71 Total: -13.34 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.87 Total: -44.35 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.73 -8.12 -36.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336728979.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.853 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds