Wall clock time and date at job start Sun Mar 29 2020 23:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39739 * 120.35193 * 2 1 4 4 Cl 1.73601 * 119.42051 * 359.97438 * 3 2 1 5 5 C 1.35307 * 121.15908 * 180.02562 * 3 2 1 6 6 N 1.35844 * 121.87551 * 359.97438 * 5 3 2 7 7 H 0.97009 * 119.72673 * 180.02562 * 6 5 3 8 8 C 1.37561 * 120.53812 * 359.97438 * 6 5 3 9 9 N 1.31271 * 120.58340 * 179.97438 * 8 6 5 10 10 C 1.46495 * 119.99694 * 354.22183 * 9 8 6 11 11 C 1.50703 * 109.46782 * 115.57896 * 10 9 8 12 12 H 1.07999 * 120.00435 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99903 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00078 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99927 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47107 * 90.00032 * 15 13 11 17 17 H 1.48502 * 109.47192 * 210.00054 * 15 13 11 18 18 H 1.48499 * 109.47288 * 330.00074 * 15 13 11 19 19 C 1.38988 * 120.35653 * 180.27065 * 2 1 3 20 20 C 1.43208 * 120.84990 * 0.02562 * 19 2 1 21 21 N 3.49097 * 81.19327 * 180.27342 * 2 1 3 22 22 H 1.08993 * 109.47410 * 90.00532 * 1 2 3 23 23 H 1.09003 * 109.46925 * 210.00183 * 1 2 3 24 24 H 1.08999 * 109.47151 * 329.99655 * 1 2 3 25 25 H 1.08001 * 119.06096 * 179.97438 * 5 3 2 26 26 H 1.09000 * 109.47750 * 355.57941 * 10 9 8 27 27 H 1.08995 * 109.47162 * 235.57232 * 10 9 8 28 28 H 0.96991 * 120.00228 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2131 1.2059 0.0000 4 17 1.3391 2.7058 -0.0007 5 6 3.5660 1.2249 -0.0005 6 7 4.2996 0.0816 -0.0005 7 1 5.2684 0.1316 -0.0005 8 6 3.6798 -1.1465 0.0005 9 7 4.3877 -2.2520 0.0000 10 6 5.8456 -2.1880 -0.1295 11 6 6.4851 -2.7081 1.1321 12 1 5.8675 -3.0515 1.9488 13 6 7.8589 -2.7455 1.2438 14 7 8.6111 -2.3269 0.2495 15 14 8.6516 -3.3895 2.8078 16 1 8.8701 -4.8532 2.6855 17 1 9.9554 -2.7103 3.0179 18 1 7.7597 -3.1170 3.9633 19 6 2.2094 -1.1993 -0.0057 20 6 1.5196 -2.4543 -0.0121 21 7 0.9725 -3.4498 -0.0165 22 1 -0.3634 -0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8899 0.5139 25 1 4.0773 2.1763 -0.0009 26 1 6.1510 -1.1544 -0.2922 27 1 6.1623 -2.7979 -0.9754 28 1 9.5775 -2.3535 0.3279 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336741622.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:45 Heat of formation + Delta-G solvation = 70.506951 kcal Electronic energy + Delta-G solvation = -15205.785287 eV Core-core repulsion = 12476.323842 eV Total energy + Delta-G solvation = -2729.461445 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.18478 -36.77667 -36.35611 -34.99958 -33.75205 -32.61346 -29.56850 -28.74875 -26.61854 -23.87420 -23.12649 -20.33724 -19.67539 -17.27059 -16.93570 -16.42094 -15.01955 -14.85298 -14.78779 -14.40341 -13.54961 -13.30387 -12.96636 -12.80998 -12.68512 -12.52950 -12.19339 -11.98646 -11.84937 -11.59078 -11.03260 -10.92335 -10.86378 -10.23494 -10.18065 -9.61456 -9.28174 -8.85269 -8.40074 -6.94643 -6.19457 -4.25965 0.59367 1.95717 2.06356 2.90729 3.16378 3.22466 3.28981 3.33941 3.53025 4.03696 4.27991 4.30259 4.45957 4.52669 4.97478 5.12839 5.32923 5.48759 5.59592 5.70236 5.91710 6.06916 6.26227 6.78505 6.89496 7.26733 7.40584 7.75037 7.96189 8.07176 8.68756 8.90180 9.40904 10.87431 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.025969 B = 0.005692 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.936255 B = 4918.407329 C = 5631.250235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.061 3.939 3 C -0.191 4.191 4 Cl -0.062 7.062 5 C 0.206 3.794 6 N -0.614 5.614 7 H 0.432 0.568 8 C 0.362 3.638 9 N -0.536 5.536 10 C 0.182 3.818 11 C -0.514 4.514 12 H 0.063 0.937 13 C 0.059 3.941 14 N -0.896 5.896 15 Si 0.903 3.097 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.070 4.070 20 C 0.292 3.708 21 N -0.432 5.432 22 H 0.087 0.913 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.166 0.834 26 H -0.008 1.008 27 H 0.049 0.951 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.883 13.292 -1.304 17.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.052 3.948 3 C -0.227 4.227 4 Cl -0.034 7.034 5 C 0.069 3.931 6 N -0.234 5.234 7 H 0.276 0.724 8 C 0.088 3.912 9 N -0.256 5.256 10 C 0.055 3.945 11 C -0.553 4.553 12 H 0.082 0.918 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.730 3.270 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.197 1.197 19 C -0.079 4.079 20 C -0.022 4.022 21 N -0.108 5.108 22 H 0.105 0.895 23 H 0.092 0.908 24 H 0.103 0.897 25 H 0.184 0.816 26 H 0.010 0.990 27 H 0.067 0.933 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.510 10.744 -1.317 16.543 hybrid contribution 1.758 0.999 0.756 2.159 sum -10.752 11.743 -0.561 15.932 Atomic orbital electron populations 1.21011 0.89625 1.04076 1.03727 1.19843 0.96259 0.89522 0.89174 1.18899 0.90724 0.87120 1.25995 1.98322 1.76017 1.31042 1.98051 1.21658 0.91573 0.91635 0.88243 1.43121 1.11872 1.04405 1.64035 0.72372 1.20480 0.90985 0.81007 0.98707 1.73056 1.12321 1.21609 1.18578 1.19698 0.80519 0.95466 0.98785 1.21116 0.91089 1.42764 1.00309 0.91836 1.25012 0.97114 0.95178 0.97061 1.69931 1.05229 1.46872 1.31410 0.86406 0.78464 0.79207 0.82895 1.20351 1.21054 1.19747 1.15908 0.88057 0.86529 1.17389 1.24585 0.92423 0.91974 0.93227 1.81144 1.10245 1.09306 1.10142 0.89464 0.90785 0.89690 0.81650 0.99028 0.93311 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 9.24 36.00 0.33 -0.91 15 2 C 0.06 0.75 5.95 -103.79 -0.62 0.13 15 3 C -0.19 -2.08 6.25 -40.07 -0.25 -2.33 15 4 Cl -0.06 -0.57 27.27 -51.86 -1.41 -1.98 15 5 C 0.21 2.21 10.84 -16.82 -0.18 2.02 15 6 N -0.61 -9.03 5.24 -10.68 -0.06 -9.09 15 7 H 0.43 6.57 6.28 -40.82 -0.26 6.31 15 8 C 0.36 6.67 7.65 -154.09 -1.18 5.50 15 9 N -0.54 -12.39 10.10 -59.80 -0.60 -13.00 15 10 C 0.18 4.65 6.05 -5.19 -0.03 4.62 15 11 C -0.51 -14.40 9.39 -34.44 -0.32 -14.72 15 12 H 0.06 1.83 7.81 -52.49 -0.41 1.42 15 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 14 N -0.90 -25.34 13.29 55.43 0.74 -24.60 15 15 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 15 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 17 H -0.28 -6.55 7.11 56.52 0.40 -6.14 15 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 19 C -0.07 -1.12 5.95 -104.08 -0.62 -1.74 15 20 C 0.29 5.23 13.59 -22.47 -0.31 4.92 15 21 N -0.43 -8.35 18.54 41.83 0.78 -7.57 15 22 H 0.09 0.74 8.14 -51.93 -0.42 0.32 15 23 H 0.07 0.76 7.15 -51.93 -0.37 0.39 15 24 H 0.08 0.70 6.93 -51.93 -0.36 0.34 15 25 H 0.17 1.13 8.06 -52.49 -0.42 0.71 15 26 H -0.01 -0.19 5.52 -51.93 -0.29 -0.47 15 27 H 0.05 1.36 8.14 -51.93 -0.42 0.94 15 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 15 LS Contribution 271.99 15.07 4.10 4.10 Total: -1.00 -31.59 271.99 -6.84 -38.43 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -2.09 Total: -1.58 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -3.27 Total: -0.99 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.85 Total: -54.26 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.41 Total: -1.98 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.59 -6.84 -38.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336741622.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.939 kcal (2) G-P(sol) polarization free energy of solvation -31.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds