Wall clock time and date at job start Sun Mar 29 2020 23:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29374 * 124.70196 * 2 1 4 4 C 1.30953 * 117.46391 * 180.02562 * 3 2 1 5 5 C 1.36772 * 113.92276 * 359.97438 * 4 3 2 6 6 C 1.46563 * 126.18107 * 179.97438 * 5 4 3 7 7 O 1.21729 * 119.99747 * 6.08166 * 6 5 4 8 8 N 1.34769 * 120.00303 * 186.08729 * 6 5 4 9 9 C 1.36892 * 120.00067 * 185.72472 * 8 6 5 10 10 H 1.08003 * 119.99772 * 341.46835 * 9 8 6 11 11 C 1.39005 * 120.00521 * 161.47118 * 9 8 6 12 12 N 1.31403 * 119.99806 * 339.56224 * 11 9 8 13 13 Si 1.86803 * 120.00398 * 159.55576 * 11 9 8 14 14 H 1.48493 * 109.47004 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46834 * 119.99950 * 13 11 9 16 16 H 1.48491 * 109.47361 * 240.00073 * 13 11 9 17 17 C 1.46496 * 120.00127 * 5.71702 * 8 6 5 18 18 C 1.47197 * 109.47161 * 275.90352 * 17 8 6 19 19 N 4.60610 * 113.22986 * 153.77492 * 2 1 3 20 20 S 1.70928 * 124.70288 * 180.28921 * 2 1 3 21 21 H 1.09003 * 109.47227 * 89.97806 * 1 2 3 22 22 H 1.09005 * 109.47268 * 209.97896 * 1 2 3 23 23 H 1.09000 * 109.47263 * 329.97922 * 1 2 3 24 24 H 1.08001 * 123.03330 * 180.02562 * 4 3 2 25 25 H 0.96996 * 120.00182 * 179.97438 * 12 11 9 26 26 H 1.09001 * 109.47380 * 155.90617 * 17 8 6 27 27 H 1.09000 * 109.47222 * 35.90280 * 17 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2435 1.0636 0.0000 4 6 3.5426 0.8986 -0.0005 5 6 3.9353 -0.4115 -0.0004 6 6 5.3169 -0.9007 -0.0015 7 8 6.2406 -0.1155 0.1092 8 7 5.5647 -2.2196 -0.1250 9 6 6.8453 -2.6892 -0.0087 10 1 7.6804 -2.0132 -0.1180 11 6 7.0708 -4.0363 0.2501 12 7 6.1170 -4.7735 0.7728 13 14 8.7298 -4.7984 -0.1454 14 1 9.6252 -3.7634 -0.7217 15 1 9.3351 -5.3392 1.0982 16 1 8.5481 -5.8983 -1.1263 17 6 4.4637 -3.1507 -0.3837 18 6 3.8202 -3.5153 0.8890 19 7 3.3237 -3.7970 1.8704 20 16 2.4801 -1.4052 -0.0071 21 1 -0.3634 0.0004 -1.0277 22 1 -0.3634 -0.8902 0.5135 23 1 -0.3634 0.8898 0.5142 24 1 4.2407 1.7227 -0.0002 25 1 6.2742 -5.7136 0.9530 26 1 4.8524 -4.0485 -0.8644 27 1 3.7324 -2.6759 -1.0377 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355690787.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:32 Heat of formation + Delta-G solvation = 34.475841 kcal Electronic energy + Delta-G solvation = -15932.557359 eV Core-core repulsion = 13203.577194 eV Total energy + Delta-G solvation = -2728.980164 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.047 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.05581 -40.23595 -37.73285 -36.32947 -34.05056 -32.99207 -29.94416 -29.36766 -26.94386 -25.06681 -22.88787 -20.09483 -19.80867 -19.59382 -18.36465 -17.55473 -17.00338 -16.29306 -16.01525 -15.69011 -15.25667 -15.23271 -14.61639 -14.32674 -13.94740 -13.58100 -13.39059 -13.31200 -13.10857 -12.98136 -12.54977 -12.49307 -12.46440 -12.07309 -11.29283 -10.87288 -10.54320 -10.34845 -10.13457 -9.73343 -8.54281 -6.08068 -0.71397 0.21386 0.62184 1.33564 1.47807 1.54630 1.60433 1.77357 2.11526 2.25436 2.30600 2.85537 2.92305 3.20657 3.32143 3.84726 4.08805 4.21962 4.33431 4.64149 4.64890 4.71028 5.00730 5.22982 5.38135 5.84521 6.22501 6.64721 6.82970 6.92225 7.11391 7.67535 8.50161 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.036313 B = 0.007865 C = 0.006731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.894485 B = 3559.084553 C = 4158.648968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.025 3.975 3 N -0.497 5.497 4 C 0.098 3.902 5 C -0.299 4.299 6 C 0.512 3.488 7 O -0.605 6.605 8 N -0.436 5.436 9 C -0.342 4.342 10 H 0.092 0.908 11 C 0.010 3.990 12 N -0.883 5.883 13 Si 0.997 3.003 14 H -0.269 1.269 15 H -0.284 1.284 16 H -0.258 1.258 17 C 0.210 3.790 18 C 0.249 3.751 19 N -0.471 5.471 20 S 0.194 5.806 21 H 0.112 0.888 22 H 0.098 0.902 23 H 0.096 0.904 24 H 0.183 0.817 25 H 0.283 0.717 26 H 0.144 0.856 27 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.080 0.864 -6.017 11.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.249 4.249 3 N -0.212 5.212 4 C -0.060 4.060 5 C -0.423 4.423 6 C 0.303 3.697 7 O -0.492 6.492 8 N -0.153 5.153 9 C -0.469 4.469 10 H 0.110 0.890 11 C -0.194 4.194 12 N -0.521 5.521 13 Si 0.819 3.181 14 H -0.194 1.194 15 H -0.210 1.210 16 H -0.182 1.182 17 C 0.082 3.918 18 C -0.070 4.070 19 N -0.152 5.152 20 S 0.453 5.547 21 H 0.130 0.870 22 H 0.116 0.884 23 H 0.114 0.886 24 H 0.200 0.800 25 H 0.093 0.907 26 H 0.161 0.839 27 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.933 0.041 -4.474 11.813 hybrid contribution 1.954 0.464 -0.103 2.011 sum -8.979 0.505 -4.578 10.091 Atomic orbital electron populations 1.20699 0.81999 1.05383 1.05705 1.28545 1.04126 0.92496 0.99750 1.66251 1.04347 1.32411 1.18163 1.22395 0.91241 0.95042 0.97311 1.26072 0.97851 0.98632 1.19752 1.17060 0.86477 0.83040 0.83170 1.90637 1.45746 1.55662 1.57154 1.43649 1.07428 1.04033 1.60235 1.19809 0.83140 0.94130 1.49803 0.89010 1.26080 1.03227 0.96171 0.93932 1.69891 1.35734 1.09212 1.37229 0.84826 0.76889 0.78207 0.78133 1.19358 1.21048 1.18222 1.19239 0.87749 0.97048 0.87732 1.29016 0.90808 0.91867 0.95350 1.80858 1.13491 1.10161 1.10694 1.84282 0.94956 1.09552 1.65950 0.87009 0.88375 0.88578 0.79961 0.90693 0.83860 0.86258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 10.46 71.24 0.74 -0.59 15 2 C 0.02 0.70 7.37 88.47 0.65 1.35 15 3 N -0.50 -16.45 10.50 -189.50 -1.99 -18.44 15 4 C 0.10 3.64 11.17 84.48 0.94 4.58 15 5 C -0.30 -12.03 6.22 24.10 0.15 -11.88 15 6 C 0.51 25.05 7.53 86.42 0.65 25.70 15 7 O -0.60 -33.65 16.53 -4.44 -0.07 -33.73 15 8 N -0.44 -20.89 2.59 -650.09 -1.69 -22.58 15 9 C -0.34 -17.58 9.33 84.09 0.78 -16.80 15 10 H 0.09 5.07 7.36 -2.91 -0.02 5.05 15 11 C 0.01 0.46 4.88 84.94 0.41 0.88 15 12 N -0.88 -42.17 9.45 21.67 0.20 -41.97 15 13 Si 1.00 38.17 29.60 68.60 2.03 40.20 15 14 H -0.27 -10.48 7.11 99.48 0.71 -9.77 15 15 H -0.28 -11.08 7.11 99.48 0.71 -10.37 15 16 H -0.26 -9.10 7.11 99.48 0.71 -8.40 15 17 C 0.21 8.30 4.73 84.57 0.40 8.70 15 18 C 0.25 10.55 10.38 89.45 0.93 11.48 15 19 N -0.47 -21.16 18.53 20.00 0.37 -20.79 15 20 S 0.19 6.09 16.14 -56.49 -0.91 5.18 15 21 H 0.11 1.40 8.14 -2.39 -0.02 1.38 15 22 H 0.10 1.35 8.14 -2.38 -0.02 1.34 15 23 H 0.10 1.52 8.14 -2.39 -0.02 1.50 15 24 H 0.18 6.55 8.06 -2.91 -0.02 6.53 15 25 H 0.28 12.74 8.31 -92.71 -0.77 11.97 15 26 H 0.14 5.56 6.48 -2.39 -0.02 5.55 15 27 H 0.12 3.86 5.06 -17.98 -0.09 3.77 15 Total: -1.00 -64.89 256.42 4.75 -60.14 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 1.14 Total: 8.55 kcal Atomic # 6 Polarization: 17.76 SS G_CDS: 5.67 Total: 23.43 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -3.10 Total: -103.77 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -0.07 Total: -33.73 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Atomic # 16 Polarization: 6.09 SS G_CDS: -0.91 Total: 5.18 kcal Total: -64.89 4.75 -60.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355690787.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.611 kcal (2) G-P(sol) polarization free energy of solvation -64.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds