Wall clock time and date at job start Sun Mar 29 2020 23:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29504 * 121.53338 * 2 1 4 4 S 1.69476 * 107.86050 * 179.97438 * 3 2 1 5 5 C 1.72008 * 96.03638 * 359.97438 * 4 3 2 6 6 C 1.37964 * 105.36396 * 0.02562 * 5 4 3 7 7 C 1.47266 * 123.09975 * 179.97438 * 6 5 4 8 8 O 1.21634 * 120.00031 * 220.63556 * 7 6 5 9 9 N 1.34775 * 119.99625 * 40.63581 * 7 6 5 10 10 C 1.36982 * 120.00276 * 5.21086 * 9 7 6 11 11 H 1.08002 * 120.00102 * 17.47269 * 10 9 7 12 12 C 1.38976 * 119.99995 * 197.48157 * 10 9 7 13 13 N 1.31410 * 120.00103 * 13.87514 * 12 10 9 14 14 Si 1.86800 * 119.99967 * 193.87873 * 12 10 9 15 15 H 1.48501 * 109.47128 * 59.99711 * 14 12 10 16 16 H 1.48491 * 109.47243 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47270 * 299.99787 * 14 12 10 18 18 C 1.46502 * 119.99911 * 185.20416 * 9 7 6 19 19 C 1.47204 * 109.46925 * 84.23576 * 18 9 7 20 20 N 6.37201 * 100.42095 * 192.19110 * 2 1 3 21 21 H 1.08991 * 109.47080 * 90.02698 * 1 2 3 22 22 H 1.08996 * 109.47285 * 210.03125 * 1 2 3 23 23 H 1.09004 * 109.46818 * 330.02646 * 1 2 3 24 24 H 1.08004 * 127.32323 * 179.74336 * 5 4 3 25 25 H 0.97000 * 119.99938 * 180.02562 * 13 12 10 26 26 H 1.08998 * 109.47232 * 204.23370 * 18 9 7 27 27 H 1.09000 * 109.47023 * 324.23270 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1038 0.0000 4 16 3.8311 0.7032 0.0007 5 6 3.6025 -1.0016 0.0018 6 6 2.2354 -1.1871 0.0010 7 6 1.6043 -2.5177 0.0009 8 8 0.6219 -2.7249 -0.6857 9 7 2.1155 -3.5059 0.7617 10 6 3.1549 -3.2455 1.6150 11 1 3.3820 -2.2273 1.8946 12 6 3.9174 -4.2915 2.1209 13 7 3.8294 -5.4880 1.5847 14 14 5.0673 -3.9967 3.5632 15 1 4.2833 -3.5257 4.7331 16 1 5.7609 -5.2630 3.9101 17 1 6.0714 -2.9670 3.1933 18 6 1.5592 -4.8585 0.6761 19 6 2.1807 -5.5742 -0.4502 20 7 2.6596 -6.1256 -1.3234 21 1 -0.3633 -0.0005 -1.0276 22 1 -0.3633 -0.8897 0.5143 23 1 -0.3633 0.8903 0.5134 24 1 4.3667 -1.7648 -0.0013 25 1 4.3613 -6.2181 1.9380 26 1 1.7623 -5.3942 1.6034 27 1 0.4822 -4.7992 0.5192 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358333656.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:24 Heat of formation + Delta-G solvation = 44.163510 kcal Electronic energy + Delta-G solvation = -16080.925677 eV Core-core repulsion = 13352.365602 eV Total energy + Delta-G solvation = -2728.560076 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.047 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.66851 -37.68229 -35.58385 -34.53511 -31.92674 -31.13623 -29.21431 -27.57218 -25.26054 -23.28966 -20.60193 -19.00584 -18.52558 -16.84775 -16.43447 -16.17180 -14.70769 -14.67658 -14.28309 -14.10899 -13.50084 -13.02692 -12.74274 -12.60035 -12.10569 -11.92309 -11.87093 -11.56651 -11.37869 -11.29781 -10.97175 -10.73757 -10.63403 -10.37865 -10.30714 -9.52308 -9.12885 -8.84406 -8.28100 -8.16449 -6.69204 -4.26729 1.04497 1.87834 2.17472 2.49714 2.99026 3.06955 3.08075 3.62995 3.79250 3.94011 4.12162 4.67057 4.80381 5.05061 5.39172 5.58310 5.72246 5.88386 5.96686 6.07609 6.21161 6.36550 6.46809 6.62850 7.07152 7.11922 7.29646 8.02710 8.72950 8.82601 9.06715 9.46970 10.33039 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.019280 B = 0.010168 C = 0.007606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.904146 B = 2753.100260 C = 3680.592291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.157 3.843 3 N -0.480 5.480 4 S 0.225 5.775 5 C -0.143 4.143 6 C -0.177 4.177 7 C 0.525 3.475 8 O -0.587 6.587 9 N -0.428 5.428 10 C -0.340 4.340 11 H 0.107 0.893 12 C 0.040 3.960 13 N -0.869 5.869 14 Si 0.926 3.074 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.271 1.271 18 C 0.230 3.770 19 C 0.258 3.742 20 N -0.484 5.484 21 H 0.083 0.917 22 H 0.087 0.913 23 H 0.069 0.931 24 H 0.196 0.804 25 H 0.278 0.722 26 H 0.135 0.865 27 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.175 6.677 3.106 7.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.022 4.022 3 N -0.301 5.301 4 S 0.379 5.621 5 C -0.293 4.293 6 C -0.197 4.197 7 C 0.312 3.688 8 O -0.472 6.472 9 N -0.146 5.146 10 C -0.468 4.468 11 H 0.125 0.875 12 C -0.166 4.166 13 N -0.506 5.506 14 Si 0.752 3.248 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.196 1.196 18 C 0.104 3.896 19 C -0.060 4.060 20 N -0.164 5.164 21 H 0.102 0.898 22 H 0.105 0.895 23 H 0.088 0.912 24 H 0.213 0.787 25 H 0.089 0.911 26 H 0.152 0.848 27 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.033 7.604 1.534 7.757 hybrid contribution 0.066 -1.518 1.134 1.896 sum 0.099 6.086 2.668 6.646 Atomic orbital electron populations 1.20527 0.86168 1.03294 1.03766 1.21439 0.99057 0.87244 0.94421 1.76358 1.00071 1.26256 1.27425 1.83752 1.11276 0.98359 1.68702 1.27523 1.00063 1.02061 0.99606 1.20349 0.92328 0.96059 1.10922 1.17214 0.85867 0.83794 0.81919 1.90678 1.28331 1.83122 1.45101 1.43460 1.30666 1.05731 1.34717 1.19799 1.08813 0.95582 1.22571 0.87547 1.25310 0.97683 0.94999 0.98637 1.69823 1.40141 1.01767 1.38903 0.85978 0.79764 0.78111 0.80955 1.19438 1.20618 1.19574 1.18669 0.94654 0.82350 0.93952 1.29311 0.91535 0.92719 0.92413 1.80974 1.10923 1.10632 1.13912 0.89810 0.89453 0.91189 0.78707 0.91062 0.84793 0.89305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 9.39 36.01 0.34 -0.84 15 2 C 0.16 2.85 6.74 -83.19 -0.56 2.29 15 3 N -0.48 -8.49 11.97 32.51 0.39 -8.10 15 4 S 0.22 3.54 23.69 -107.50 -2.55 0.99 15 5 C -0.14 -2.57 8.98 30.63 0.28 -2.30 15 6 C -0.18 -3.49 5.06 -105.94 -0.54 -4.02 15 7 C 0.53 11.53 6.74 -12.59 -0.08 11.44 15 8 O -0.59 -13.73 15.20 5.25 0.08 -13.65 15 9 N -0.43 -9.41 2.60 -119.20 -0.31 -9.72 15 10 C -0.34 -7.41 7.83 -14.98 -0.12 -7.53 15 11 H 0.11 2.24 5.75 -52.49 -0.30 1.94 15 12 C 0.04 0.86 5.07 -17.46 -0.09 0.77 15 13 N -0.87 -20.06 9.05 55.50 0.50 -19.55 15 14 Si 0.93 17.42 29.58 -169.99 -5.03 12.39 15 15 H -0.27 -5.04 7.11 56.52 0.40 -4.63 15 16 H -0.28 -5.41 7.11 56.52 0.40 -5.01 15 17 H -0.27 -5.07 7.11 56.52 0.40 -4.67 15 18 C 0.23 4.80 5.11 -6.83 -0.03 4.77 15 19 C 0.26 6.01 13.73 -20.68 -0.28 5.73 15 20 N -0.48 -12.04 18.55 42.25 0.78 -11.26 15 21 H 0.08 1.26 8.14 -51.93 -0.42 0.83 15 22 H 0.09 1.41 6.90 -51.93 -0.36 1.06 15 23 H 0.07 0.93 8.14 -51.93 -0.42 0.51 15 24 H 0.20 3.49 7.24 -52.48 -0.38 3.11 15 25 H 0.28 6.28 8.31 -40.82 -0.34 5.94 15 26 H 0.13 2.75 6.19 -51.93 -0.32 2.43 15 27 H 0.09 1.67 7.53 -51.93 -0.39 1.28 15 LS Contribution 258.83 15.07 3.90 3.90 Total: -1.00 -26.84 258.83 -5.06 -31.90 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -1.73 Total: 2.79 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: -1.09 Total: 10.31 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 1.37 Total: -48.63 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.08 Total: -13.65 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.39 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -2.55 Total: 0.99 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -26.84 -5.06 -31.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358333656.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.059 kcal (2) G-P(sol) polarization free energy of solvation -26.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds