Wall clock time and date at job start Sun Mar 29 2020 23:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46904 * 109.47177 * 2 1 4 4 C 1.46898 * 110.99611 * 296.92918 * 3 2 1 5 5 C 1.53000 * 109.47482 * 288.48172 * 4 3 2 6 6 H 1.08997 * 109.46791 * 56.56921 * 5 4 3 7 7 C 1.47195 * 109.46751 * 296.57261 * 5 4 3 8 8 N 4.48938 * 139.40178 * 314.87661 * 2 1 3 9 9 C 1.52999 * 109.47287 * 176.56907 * 5 4 3 10 10 C 1.50690 * 109.47194 * 184.99980 * 9 5 4 11 11 H 1.08000 * 120.00054 * 0.02562 * 10 9 5 12 12 C 1.37878 * 120.00137 * 179.72455 * 10 9 5 13 13 N 1.31511 * 119.99733 * 0.27366 * 12 10 9 14 14 Si 1.86798 * 120.00197 * 180.27801 * 12 10 9 15 15 H 1.48494 * 109.47327 * 59.99847 * 14 12 10 16 16 H 1.48500 * 109.47046 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47205 * 299.99938 * 14 12 10 18 18 C 1.46897 * 110.99837 * 60.88290 * 3 2 1 19 19 C 1.53006 * 109.46917 * 66.04961 * 18 3 2 20 20 C 1.53781 * 113.61391 * 274.13130 * 19 18 3 21 21 C 1.53951 * 87.01732 * 220.04977 * 20 19 18 22 22 C 1.53773 * 87.11544 * 25.36549 * 21 20 19 23 23 H 1.09005 * 109.47079 * 182.33173 * 1 2 3 24 24 H 1.09000 * 109.47406 * 302.33386 * 1 2 3 25 25 H 1.08998 * 109.47085 * 62.33180 * 1 2 3 26 26 H 1.08998 * 109.47607 * 239.99521 * 2 1 3 27 27 H 1.09000 * 109.46864 * 119.99681 * 2 1 3 28 28 H 1.09002 * 109.46827 * 168.48091 * 4 3 2 29 29 H 1.09004 * 109.47166 * 48.48426 * 4 3 2 30 30 H 1.09002 * 109.46930 * 64.99588 * 9 5 4 31 31 H 1.09002 * 109.46890 * 305.00321 * 9 5 4 32 32 H 0.97005 * 120.00387 * 179.97438 * 13 12 10 33 33 H 1.09001 * 109.46868 * 186.04414 * 18 3 2 34 34 H 1.08994 * 109.47510 * 306.04961 * 18 3 2 35 35 H 1.09006 * 112.84890 * 45.33100 * 19 18 3 36 36 H 1.09001 * 113.61141 * 334.57016 * 20 19 18 37 37 H 1.09000 * 113.61191 * 105.47045 * 20 19 18 38 38 H 1.08998 * 113.53857 * 270.81056 * 21 20 19 39 39 H 1.09006 * 113.66604 * 139.93482 * 21 20 19 40 40 H 1.09002 * 113.61478 * 220.09052 * 22 21 20 41 41 H 1.09000 * 113.69477 * 89.19614 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6095 2.0883 -1.2227 5 6 2.4048 1.5482 -2.4130 6 1 2.2593 0.4706 -2.4882 7 6 3.8350 1.8378 -2.2194 8 7 4.9387 2.0613 -2.0702 9 6 1.9178 2.2196 -3.6987 10 6 2.6138 1.6005 -4.8833 11 1 3.3313 0.8073 -4.7341 12 6 2.3299 2.0426 -6.1580 13 7 1.4557 3.0082 -6.3397 14 14 3.1868 1.2700 -7.6271 15 1 2.8773 -0.1816 -7.6736 16 1 2.7106 1.9184 -8.8753 17 1 4.6542 1.4594 -7.5002 18 6 1.5660 2.1038 1.1981 19 6 2.2158 1.4879 2.4389 20 6 1.4452 0.2832 3.0042 21 6 1.7626 0.8394 4.4042 22 6 1.8712 2.2241 3.7444 23 1 -0.3633 -1.0269 0.0418 24 1 -0.3634 0.5496 0.8683 25 1 -0.3633 0.4772 -0.9101 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.8030 3.1551 -1.1105 29 1 0.5451 1.9282 -1.3943 30 1 2.1441 3.2851 -3.6603 31 1 0.8412 2.0801 -3.7960 32 1 1.2562 3.3196 -7.2365 33 1 1.8507 3.1532 1.1218 34 1 0.4818 2.0264 1.2795 35 1 3.2824 1.3029 2.3104 36 1 0.3826 0.2917 2.7615 37 1 1.9203 -0.6756 2.7962 38 1 2.7049 0.4757 4.8137 39 1 0.9336 0.7544 5.1070 40 1 2.6897 2.8300 4.1331 41 1 0.9260 2.7654 3.7039 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361488166.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:29 Heat of formation + Delta-G solvation = 33.115916 kcal Electronic energy + Delta-G solvation = -18514.749838 eV Core-core repulsion = 15815.883026 eV Total energy + Delta-G solvation = -2698.866812 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.66041 -37.61384 -35.60434 -33.56925 -31.78094 -30.35800 -28.15818 -25.99186 -25.67099 -24.12349 -22.90016 -21.62680 -19.95404 -19.40617 -16.86636 -16.50169 -15.94460 -15.51121 -15.10508 -14.73516 -14.39265 -13.92363 -13.39530 -12.96604 -12.70875 -12.60695 -12.52308 -12.30303 -12.12841 -11.93891 -11.67802 -11.47670 -11.21005 -11.19310 -11.04186 -10.81339 -10.67344 -10.58144 -10.45013 -10.26756 -10.19435 -9.97394 -9.46908 -9.19140 -8.43337 -8.05519 -6.07552 -4.10521 3.32473 3.36613 3.40549 3.79608 3.90367 4.05253 4.43143 4.52639 4.60439 4.67165 4.77609 4.97473 5.16987 5.28587 5.30535 5.37559 5.41820 5.51589 5.55550 5.60688 5.66409 5.73077 5.76219 5.78452 5.86377 5.89866 5.92825 6.08538 6.16519 6.20218 6.35899 6.43229 6.50195 6.56785 7.27725 7.30431 7.45346 7.56311 7.87778 8.26048 8.65600 8.94119 9.54729 11.03358 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.039617 B = 0.004407 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.601836 B = 6352.716038 C = 6548.421479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.042 3.958 3 N -0.537 5.537 4 C 0.057 3.943 5 C 0.012 3.988 6 H 0.098 0.902 7 C 0.259 3.741 8 N -0.483 5.483 9 C 0.032 3.968 10 C -0.526 4.526 11 H 0.056 0.944 12 C 0.063 3.937 13 N -0.892 5.892 14 Si 0.891 3.109 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.061 3.939 19 C -0.102 4.102 20 C -0.138 4.138 21 C -0.144 4.144 22 C -0.137 4.137 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.025 0.975 31 H 0.036 0.964 32 H 0.263 0.737 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.126 -4.459 18.020 19.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.086 4.086 3 N -0.260 5.260 4 C -0.072 4.072 5 C -0.010 4.010 6 H 0.116 0.884 7 C -0.058 4.058 8 N -0.160 5.160 9 C -0.007 4.007 10 C -0.564 4.564 11 H 0.074 0.926 12 C -0.139 4.139 13 N -0.531 5.531 14 Si 0.719 3.281 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.067 4.067 19 C -0.121 4.121 20 C -0.175 4.175 21 C -0.181 4.181 22 C -0.175 4.175 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.114 0.886 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.026 -4.021 18.111 18.797 hybrid contribution -0.892 -0.431 -1.054 1.447 sum -3.918 -4.453 17.057 18.058 Atomic orbital electron populations 1.22464 0.98519 1.02134 1.02220 1.22302 0.92791 0.90508 1.03033 1.62269 1.59572 1.02337 1.01825 1.22291 0.98034 0.98510 0.88345 1.19208 0.82215 1.02460 0.97082 0.88381 1.28857 0.94698 0.92007 0.90261 1.80969 1.13139 1.10217 1.11662 1.19159 0.97258 0.96193 0.88083 1.21109 1.24190 1.19993 0.91086 0.92579 1.24945 0.95029 0.94926 0.99021 1.69928 1.33347 1.27525 1.22311 0.86662 0.80113 0.79536 0.81820 1.20068 1.21209 1.20210 1.22139 0.97229 0.97904 0.89454 1.22540 1.00667 0.96056 0.92824 1.23121 1.00457 0.98124 0.95842 1.22840 1.01526 0.97045 0.96715 1.22907 1.01691 0.96410 0.96496 0.92353 0.92559 0.91807 0.90428 0.90437 0.90585 0.92423 0.95651 0.94566 0.92774 0.91015 0.94217 0.88607 0.90227 0.91514 0.90433 0.91842 0.91645 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.05 9.08 37.16 0.34 -1.72 16 2 C 0.04 0.50 5.40 -3.82 -0.02 0.47 16 3 N -0.54 -7.25 4.33 -234.63 -1.02 -8.26 16 4 C 0.06 0.86 4.21 -3.82 -0.02 0.85 16 5 C 0.01 0.23 2.21 -93.41 -0.21 0.03 16 6 H 0.10 1.75 6.57 -51.93 -0.34 1.41 16 7 C 0.26 5.53 13.63 -20.76 -0.28 5.25 16 8 N -0.48 -11.21 18.54 42.15 0.78 -10.43 16 9 C 0.03 0.74 4.42 -27.89 -0.12 0.62 16 10 C -0.53 -14.12 8.60 -34.44 -0.30 -14.42 16 11 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 12 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 14 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 C 0.06 0.69 4.64 -3.82 -0.02 0.68 16 19 C -0.10 -1.05 3.49 -89.80 -0.31 -1.36 16 20 C -0.14 -1.23 5.71 -25.83 -0.15 -1.37 16 21 C -0.14 -1.17 8.09 -25.83 -0.21 -1.38 16 22 C -0.14 -1.20 7.65 -25.92 -0.20 -1.40 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.55 4.87 -51.93 -0.25 0.30 16 25 H 0.06 0.74 6.36 -51.93 -0.33 0.41 16 26 H 0.08 1.00 6.51 -51.93 -0.34 0.66 16 27 H 0.08 0.85 5.20 -51.93 -0.27 0.58 16 28 H 0.08 1.18 7.82 -51.93 -0.41 0.77 16 29 H 0.06 0.82 5.94 -51.93 -0.31 0.51 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.07 0.86 7.87 -51.93 -0.41 0.45 16 34 H 0.04 0.43 5.72 -51.93 -0.30 0.13 16 35 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.08 0.69 6.59 -51.93 -0.34 0.35 16 37 H 0.07 0.60 7.22 -51.93 -0.37 0.22 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 321.25 15.07 4.84 4.84 Total: -1.00 -29.56 321.25 -7.85 -37.41 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -6.58 Total: -2.91 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -1.59 Total: -12.12 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.50 Total: -43.63 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.56 -7.85 -37.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361488166.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.523 kcal (2) G-P(sol) polarization free energy of solvation -29.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds