Wall clock time and date at job start Sun Mar 29 2020 23:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00058 * 2 1 4 4 H 1.48502 * 109.47460 * 269.99813 * 3 2 1 5 5 H 1.48500 * 109.47228 * 30.00067 * 3 2 1 6 6 H 1.48506 * 109.47208 * 150.00068 * 3 2 1 7 7 C 1.37878 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99857 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46943 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.46891 * 179.97438 * 10 9 7 12 12 C 1.34779 * 120.00061 * 180.02562 * 11 10 9 13 13 O 1.21282 * 119.99904 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00343 * 179.97438 * 12 11 10 15 15 H 1.09002 * 115.56312 * 325.69804 * 14 12 11 16 16 C 1.53079 * 117.48859 * 111.39971 * 14 12 11 17 17 C 1.52997 * 59.98332 * 107.49184 * 16 14 12 18 18 Cl 1.80299 * 117.50400 * 107.50110 * 17 16 14 19 19 Cl 1.80299 * 117.49560 * 252.49961 * 17 16 14 20 20 H 0.96997 * 120.00035 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.46993 * 59.99950 * 9 7 2 22 22 H 1.08994 * 109.46724 * 299.99525 * 9 7 2 23 23 H 1.09010 * 109.46982 * 60.00204 * 10 9 7 24 24 H 1.08997 * 109.47236 * 300.00455 * 10 9 7 25 25 H 0.96993 * 120.00067 * 0.02562 * 11 10 9 26 26 H 1.08998 * 117.49992 * 359.97438 * 16 14 12 27 27 H 1.09001 * 117.50746 * 214.96797 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5126 -4.9308 0.0012 12 6 2.1865 -6.0980 0.0018 13 8 3.3993 -6.0981 0.0023 14 6 1.4330 -7.4032 0.0030 15 1 0.4946 -7.4039 0.5575 16 6 1.5084 -8.2637 -1.2607 17 6 2.2551 -8.6936 0.0036 18 17 1.5975 -10.0991 0.9217 19 17 4.0512 -8.5363 0.0037 20 1 -0.4850 0.8400 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 2.8718 -3.6044 0.8906 24 1 2.8719 -3.6044 -0.8894 25 1 0.5427 -4.9308 0.0011 26 1 2.1026 -7.8854 -2.0926 27 1 0.6196 -8.8307 -1.5375 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388279039.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:58 Heat of formation + Delta-G solvation = -27.439799 kcal Electronic energy + Delta-G solvation = -13758.164871 eV Core-core repulsion = 10989.730536 eV Total energy + Delta-G solvation = -2768.434335 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 251.022 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.79193 -37.31170 -36.08064 -35.29645 -34.77956 -32.87483 -29.78824 -25.65588 -23.64470 -22.46240 -20.96495 -19.97884 -17.80317 -16.43643 -15.99623 -15.28425 -14.87178 -14.56922 -14.22668 -13.22505 -13.17788 -13.04614 -12.65199 -12.32222 -12.05264 -11.27016 -11.21852 -11.07499 -11.00789 -10.69298 -10.62452 -10.36484 -10.12908 -9.73532 -9.43292 -9.13060 -8.60349 -8.40589 -6.12678 -4.15644 1.01556 2.04459 2.44131 3.20275 3.27478 3.33805 3.37579 3.50372 3.95775 4.19659 4.39267 4.89376 4.95262 5.19685 5.24604 5.44870 6.26883 6.29181 6.67900 6.81791 7.46878 7.56850 7.84886 7.89866 8.23138 8.52372 8.90290 9.49483 10.98893 Molecular weight = 251.02amu Principal moments of inertia in cm(-1) A = 0.053439 B = 0.003994 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.833970 B = 7008.191936 C = 7340.929859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.123 3.877 11 N -0.714 5.714 12 C 0.527 3.473 13 O -0.522 6.522 14 C -0.158 4.158 15 H 0.144 0.856 16 C -0.119 4.119 17 C 0.021 3.979 18 Cl -0.097 7.097 19 Cl -0.054 7.054 20 H 0.262 0.738 21 H 0.023 0.977 22 H 0.023 0.977 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.398 0.602 26 H 0.126 0.874 27 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.115 -18.203 -1.264 18.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.001 3.999 11 N -0.364 5.364 12 C 0.310 3.690 13 O -0.398 6.398 14 C -0.181 4.181 15 H 0.162 0.838 16 C -0.157 4.157 17 C -0.031 4.031 18 Cl -0.070 7.070 19 Cl -0.026 7.026 20 H 0.072 0.928 21 H 0.041 0.959 22 H 0.041 0.959 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.232 0.768 26 H 0.144 0.856 27 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.728 -18.146 -1.177 18.198 hybrid contribution -0.139 0.829 0.185 0.861 sum 0.588 -17.317 -0.992 17.355 Atomic orbital electron populations 1.69947 1.06095 1.26925 1.50311 1.24994 0.94899 0.99437 0.94946 0.86509 0.79853 0.82969 0.78217 1.20544 1.21144 1.19716 1.21043 0.93255 0.90357 1.51447 0.92233 1.19326 0.94191 0.91081 0.97885 1.21767 0.96059 0.81133 1.00961 1.46258 1.10603 1.06184 1.73308 1.19245 0.87715 0.84085 0.77942 1.90814 1.12945 1.86967 1.49107 1.23183 1.01231 0.90514 1.03141 0.83828 1.23899 1.01957 0.98624 0.91199 1.26338 0.84679 0.90125 1.02002 1.98745 1.85389 1.45983 1.76917 1.98790 1.08382 1.97067 1.98404 0.92813 0.95916 0.95894 0.92374 0.92394 0.76784 0.85617 0.85394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.29 55.43 0.74 -25.02 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 15 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 7 C -0.52 -14.24 9.11 -34.44 -0.31 -14.56 15 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 15 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 15 10 C 0.12 2.50 5.61 -4.04 -0.02 2.48 15 11 N -0.71 -11.57 5.56 -60.29 -0.33 -11.91 15 12 C 0.53 8.20 7.61 -10.99 -0.08 8.12 15 13 O -0.52 -9.89 13.70 5.56 0.08 -9.81 15 14 C -0.16 -1.77 6.03 -91.73 -0.55 -2.32 15 15 H 0.14 1.25 8.14 -51.93 -0.42 0.83 15 16 C -0.12 -1.07 9.92 -26.69 -0.26 -1.33 15 17 C 0.02 0.24 3.61 -26.73 -0.10 0.14 15 18 Cl -0.10 -1.01 29.29 -51.86 -1.52 -2.53 15 19 Cl -0.05 -0.76 26.13 -51.86 -1.35 -2.11 15 20 H 0.26 7.14 8.31 -40.82 -0.34 6.81 15 21 H 0.02 0.56 8.14 -51.93 -0.42 0.14 15 22 H 0.02 0.57 8.14 -51.93 -0.42 0.15 15 23 H 0.06 1.24 8.14 -51.92 -0.42 0.82 15 24 H 0.06 1.22 8.14 -51.93 -0.42 0.80 15 25 H 0.40 5.48 8.47 -40.82 -0.35 5.13 15 26 H 0.13 1.16 8.14 -51.93 -0.42 0.74 15 27 H 0.13 0.79 8.14 -51.93 -0.42 0.37 15 LS Contribution 272.77 15.07 4.11 4.11 Total: -1.00 -30.50 272.77 -7.73 -38.23 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -2.85 Total: -1.32 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -1.57 Total: -5.77 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.40 Total: -36.93 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -2.87 Total: -4.64 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.50 -7.73 -38.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388279039.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.791 kcal (2) G-P(sol) polarization free energy of solvation -30.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds