Wall clock time and date at job start Sun Mar 29 2020 22:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46909 * 110.99540 * 2 1 4 4 C 1.50697 * 109.46908 * 293.95239 * 3 2 1 5 5 N 1.30525 * 126.34377 * 270.16262 * 4 3 2 6 6 N 1.28596 * 109.66955 * 180.30338 * 5 4 3 7 7 C 1.30522 * 109.67723 * 359.72160 * 6 5 4 8 8 N 1.35492 * 126.34839 * 90.00736 * 4 3 2 9 9 C 1.46499 * 126.97801 * 359.96554 * 8 4 3 10 10 C 1.46894 * 110.99899 * 123.94965 * 2 1 3 11 11 C 1.53005 * 109.47084 * 72.21530 * 10 2 1 12 12 C 1.50698 * 115.54678 * 55.15694 * 11 10 2 13 13 H 1.07997 * 119.99651 * 265.02091 * 12 11 10 14 14 C 1.37875 * 120.00110 * 85.02611 * 12 11 10 15 15 N 1.31513 * 120.00093 * 4.44768 * 14 12 11 16 16 Si 1.86803 * 120.00070 * 184.44799 * 14 12 11 17 17 H 1.48503 * 109.47065 * 89.99637 * 16 14 12 18 18 H 1.48496 * 109.47075 * 210.00075 * 16 14 12 19 19 H 1.48504 * 109.47042 * 329.99818 * 16 14 12 20 20 C 1.52994 * 117.49772 * 269.48782 * 11 10 2 21 21 C 1.52997 * 117.49915 * 200.82446 * 11 10 2 22 22 H 1.08999 * 109.47116 * 59.89377 * 1 2 3 23 23 H 1.09005 * 109.47125 * 179.88816 * 1 2 3 24 24 H 1.09002 * 109.47476 * 299.89278 * 1 2 3 25 25 H 1.09002 * 109.46355 * 173.95079 * 3 2 1 26 26 H 1.08993 * 109.47124 * 53.95278 * 3 2 1 27 27 H 1.07990 * 126.34989 * 179.97438 * 7 6 5 28 28 H 1.08996 * 109.47231 * 269.71740 * 9 8 4 29 29 H 1.09000 * 109.46778 * 149.71477 * 9 8 4 30 30 H 1.09000 * 109.46713 * 29.71878 * 9 8 4 31 31 H 1.08997 * 109.47346 * 192.21331 * 10 2 1 32 32 H 1.09000 * 109.47266 * 312.21155 * 10 2 1 33 33 H 0.97001 * 120.00387 * 185.01317 * 15 14 12 34 34 H 1.09001 * 117.49937 * 359.97438 * 20 11 10 35 35 H 1.08995 * 117.50202 * 145.02047 * 20 11 10 36 36 H 1.08992 * 117.50229 * 214.97744 * 21 11 10 37 37 H 1.09003 * 117.49812 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3716 0.0000 4 6 1.6368 2.0471 -1.2984 5 7 2.3484 2.0472 -2.3927 6 7 1.7439 2.7265 -3.3020 7 6 0.6166 3.1857 -2.8312 8 7 0.5147 2.7646 -1.5473 9 6 -0.5829 3.0353 -0.6155 10 6 1.9954 -0.7659 1.1376 11 6 1.7668 -2.2594 0.8964 12 6 2.3254 -2.8024 -0.3936 13 1 1.6934 -2.8783 -1.2660 14 6 3.6432 -3.2022 -0.4600 15 7 4.3888 -3.1923 0.6234 16 14 4.3697 -3.7581 -2.0887 17 1 4.9478 -2.5884 -2.7978 18 1 5.4353 -4.7616 -1.8386 19 1 3.3034 -4.3663 -2.9245 20 6 0.4601 -2.8662 1.4113 21 6 1.7815 -3.1824 2.1166 22 1 -0.3633 0.5155 -0.8890 23 1 -0.3633 -1.0277 -0.0020 24 1 -0.3634 0.5122 0.8909 25 1 3.0796 1.3445 0.1083 26 1 1.5610 1.9274 0.8308 27 1 -0.1016 3.7897 -3.3655 28 1 -1.3344 2.2505 -0.7016 29 1 -1.0340 3.9981 -0.8554 30 1 -0.1969 3.0586 0.4036 31 1 3.0633 -0.5740 1.2419 32 1 1.4810 -0.4621 2.0493 33 1 5.3337 -3.4035 0.5639 34 1 -0.2365 -2.2016 1.9223 35 1 0.0047 -3.6585 0.8173 36 1 2.1947 -4.1825 1.9862 37 1 1.9544 -2.7257 3.0911 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390592989.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:05 Heat of formation + Delta-G solvation = 123.132156 kcal Electronic energy + Delta-G solvation = -18845.233755 eV Core-core repulsion = 16046.729997 eV Total energy + Delta-G solvation = -2798.503758 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.91296 -37.78140 -35.54245 -34.64988 -31.75667 -30.90767 -27.95427 -27.00950 -26.76219 -25.17523 -22.40859 -22.14506 -21.05737 -20.15035 -18.97613 -17.06651 -16.50543 -15.97249 -15.25025 -14.71275 -14.50273 -14.37607 -14.22101 -13.54529 -13.52571 -13.12587 -12.63276 -12.54867 -11.72971 -11.45044 -11.32321 -11.21102 -11.12664 -10.74550 -10.62533 -10.35963 -10.10782 -10.08666 -10.07327 -9.41211 -9.04427 -8.83390 -8.24746 -8.00258 -7.61169 -5.86621 -3.88298 1.95208 2.56372 3.13480 3.47178 3.53162 3.57793 4.39873 4.46345 4.58726 4.61751 4.68674 4.86987 5.05915 5.14629 5.39425 5.44411 5.58384 5.70080 5.74479 5.84729 6.01661 6.17083 6.23672 6.31686 6.34141 6.45862 6.55123 6.73151 6.88559 6.96290 7.14966 7.44951 7.53898 7.65715 7.87478 8.06567 8.60129 8.99638 9.10037 9.75765 11.22682 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.021435 B = 0.007551 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.969075 B = 3707.380895 C = 4594.971604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.506 5.506 3 C 0.139 3.861 4 C 0.201 3.799 5 N -0.276 5.276 6 N -0.299 5.299 7 C 0.136 3.864 8 N -0.480 5.480 9 C 0.072 3.928 10 C 0.106 3.894 11 C 0.053 3.947 12 C -0.462 4.462 13 H 0.056 0.944 14 C 0.070 3.930 15 N -0.889 5.889 16 Si 0.885 3.115 17 H -0.277 1.277 18 H -0.291 1.291 19 H -0.277 1.277 20 C -0.219 4.219 21 C -0.150 4.150 22 H 0.048 0.952 23 H 0.083 0.917 24 H 0.011 0.989 25 H 0.108 0.892 26 H 0.041 0.959 27 H 0.214 0.786 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.005 0.995 33 H 0.257 0.743 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.795 12.638 1.915 16.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.229 5.229 3 C 0.009 3.991 4 C -0.067 4.067 5 N -0.116 5.116 6 N -0.139 5.139 7 C -0.152 4.152 8 N -0.172 5.172 9 C -0.072 4.072 10 C -0.021 4.021 11 C 0.052 3.948 12 C -0.500 4.500 13 H 0.075 0.925 14 C -0.131 4.131 15 N -0.528 5.528 16 Si 0.713 3.287 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.202 1.202 20 C -0.256 4.256 21 C -0.189 4.189 22 H 0.067 0.933 23 H 0.101 0.899 24 H 0.029 0.971 25 H 0.127 0.873 26 H 0.058 0.942 27 H 0.230 0.770 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.023 0.977 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.335 12.023 0.596 15.233 hybrid contribution -1.070 0.479 0.712 1.372 sum -10.405 12.502 1.308 16.318 Atomic orbital electron populations 1.22541 0.88740 1.03171 0.97823 1.61699 1.06455 1.08838 1.45949 1.20449 1.02497 0.89290 0.86887 1.24902 0.85104 0.97105 0.99555 1.74348 1.24881 1.15559 0.96788 1.74270 1.04822 1.10923 1.23867 1.26312 1.00488 1.04739 0.83623 1.46248 1.18202 1.40300 1.12455 1.22144 0.88591 1.03063 0.93357 1.21742 0.99210 0.94619 0.86541 1.18776 0.93174 0.88342 0.94500 1.20218 0.95592 1.39691 0.94463 0.92537 1.24866 0.97339 0.95120 0.95769 1.69995 1.06077 1.49905 1.26779 0.86700 0.78830 0.78423 0.84732 1.20333 1.21705 1.20172 1.23067 0.91634 1.04495 1.06425 1.22506 0.98526 1.02189 0.95636 0.93345 0.89851 0.97071 0.87347 0.94158 0.76989 0.89779 0.89260 0.89331 0.90400 0.97664 0.93352 0.92290 0.90629 0.89628 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 8.20 60.06 0.49 0.91 16 2 N -0.51 -9.74 4.41 -244.37 -1.08 -10.82 16 3 C 0.14 2.28 5.31 -4.97 -0.03 2.25 16 4 C 0.20 3.38 6.65 -154.99 -1.03 2.35 16 5 N -0.28 -5.61 12.21 32.80 0.40 -5.21 16 6 N -0.30 -5.44 12.21 29.69 0.36 -5.08 16 7 C 0.14 1.76 12.74 -89.94 -1.15 0.62 16 8 N -0.48 -6.06 2.77 -122.69 -0.34 -6.40 16 9 C 0.07 0.54 9.76 59.85 0.58 1.12 16 10 C 0.11 2.22 4.88 -3.82 -0.02 2.21 16 11 C 0.05 1.26 1.24 -155.66 -0.19 1.07 16 12 C -0.46 -12.68 8.53 -34.44 -0.29 -12.97 16 13 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 14 C 0.07 1.97 5.43 -17.82 -0.10 1.88 16 15 N -0.89 -25.39 12.65 55.43 0.70 -24.69 16 16 Si 0.88 22.45 29.54 -169.99 -5.02 17.43 16 17 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 20 C -0.22 -4.62 8.35 -26.69 -0.22 -4.84 16 21 C -0.15 -3.47 9.18 -26.69 -0.24 -3.72 16 22 H 0.05 0.73 5.35 -51.93 -0.28 0.46 16 23 H 0.08 1.49 6.02 -51.93 -0.31 1.18 16 24 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 25 H 0.11 1.88 7.86 -51.93 -0.41 1.47 16 26 H 0.04 0.53 7.19 -51.93 -0.37 0.16 16 27 H 0.21 1.64 8.06 -52.49 -0.42 1.22 16 28 H 0.08 0.59 6.95 -51.93 -0.36 0.23 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.61 7.19 -51.93 -0.37 0.24 16 31 H 0.08 1.79 7.80 -51.93 -0.41 1.39 16 32 H 0.01 0.10 8.00 -51.93 -0.42 -0.31 16 33 H 0.26 7.11 8.32 -40.82 -0.34 6.77 16 34 H 0.06 1.10 8.01 -51.93 -0.42 0.68 16 35 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 36 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 304.67 15.07 4.59 4.59 Total: -1.00 -33.41 304.67 -8.01 -41.41 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -5.42 Total: -2.11 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -2.20 Total: -9.14 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.05 Total: -52.18 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.41 -8.01 -41.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390592989.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.545 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds