Wall clock time and date at job start Sun Mar 29 2020 22:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.47203 * 109.47436 * 240.00011 * 2 1 3 5 5 N 2.60798 * 109.47269 * 239.99971 * 2 1 3 6 6 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 7 7 C 1.52999 * 109.46623 * 299.99900 * 6 2 1 8 8 N 1.46906 * 109.46897 * 179.97438 * 7 6 2 9 9 C 1.46845 * 110.99951 * 294.21166 * 8 7 6 10 10 C 1.53037 * 109.52225 * 174.15937 * 9 8 7 11 11 C 1.53119 * 109.27746 * 59.18191 * 10 9 8 12 12 C 1.50708 * 109.57287 * 182.40959 * 11 10 9 13 13 H 1.08002 * 119.99900 * 119.71291 * 12 11 10 14 14 C 1.37872 * 119.99959 * 299.71329 * 12 11 10 15 15 N 1.31516 * 119.99863 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00016 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47245 * 89.99857 * 16 14 12 18 18 H 1.48497 * 109.47361 * 209.99835 * 16 14 12 19 19 H 1.48501 * 109.47055 * 329.99674 * 16 14 12 20 20 C 1.53119 * 109.16110 * 302.34109 * 11 10 9 21 21 C 1.46843 * 110.99905 * 170.00310 * 8 7 6 22 22 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 23 23 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 24 24 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 27 27 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 28 28 H 1.09000 * 109.47050 * 59.99996 * 6 2 1 29 29 H 1.09001 * 109.46801 * 180.02562 * 6 2 1 30 30 H 1.09000 * 109.47486 * 299.99829 * 7 6 2 31 31 H 1.09001 * 109.47362 * 60.00551 * 7 6 2 32 32 H 1.08998 * 109.46500 * 294.17496 * 9 8 7 33 33 H 1.09004 * 109.46445 * 54.14529 * 9 8 7 34 34 H 1.09001 * 109.50550 * 299.23861 * 10 9 8 35 35 H 1.09004 * 109.50118 * 179.12177 * 10 9 8 36 36 H 1.08992 * 109.52364 * 62.24877 * 11 10 9 37 37 H 0.97000 * 119.99618 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.50304 * 297.71969 * 20 11 10 39 39 H 1.08995 * 109.50762 * 177.59649 * 20 11 10 40 40 H 1.09004 * 109.46383 * 305.85481 * 21 8 7 41 41 H 1.08997 * 109.46665 * 65.83462 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6939 -1.2019 5 7 2.3994 -1.2294 -2.1294 6 6 2.0400 -0.7213 1.2493 7 6 1.5300 0.0000 2.4984 8 7 2.0191 -0.6928 3.6980 9 6 1.4382 -2.0374 3.8027 10 6 2.0778 -2.7807 4.9776 11 6 1.8295 -1.9952 6.2683 12 6 2.5071 -2.6906 7.4209 13 1 3.2696 -2.1777 7.9882 14 6 2.1535 -3.9817 7.7511 15 7 1.2253 -4.6065 7.0599 16 14 2.9928 -4.8434 9.1802 17 1 2.2357 -4.5806 10.4304 18 1 3.0314 -6.3054 8.9230 19 1 4.3786 -4.3293 9.3233 20 6 2.4015 -0.5831 6.1151 21 6 1.7524 0.0965 4.9071 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 -1.7490 1.2492 29 1 3.1300 -0.7209 1.2494 30 1 1.8933 1.0277 2.4985 31 1 0.4400 0.0000 2.4985 32 1 0.3634 -1.9570 3.9656 33 1 1.6254 -2.5869 2.8801 34 1 3.1506 -2.8737 4.8088 35 1 1.6352 -3.7731 5.0647 36 1 0.7579 -1.9355 6.4579 37 1 0.9763 -5.5147 7.2925 38 1 3.4794 -0.6415 5.9641 39 1 2.1902 -0.0052 7.0148 40 1 2.1679 1.0970 4.7867 41 1 0.6762 0.1668 5.0650 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397107710.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:18 Heat of formation + Delta-G solvation = 5.364411 kcal Electronic energy + Delta-G solvation = -18582.055190 eV Core-core repulsion = 15881.984983 eV Total energy + Delta-G solvation = -2700.070207 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.13205 -37.71469 -35.47209 -33.70120 -31.45328 -29.80405 -28.46385 -27.66349 -25.74465 -24.17406 -22.19012 -21.82224 -20.16505 -18.59547 -17.25807 -16.33450 -15.39591 -15.13445 -14.62967 -14.44103 -14.30018 -13.79178 -13.59027 -13.25469 -12.97279 -12.76729 -12.57970 -12.32773 -12.29338 -12.11782 -12.00095 -11.50792 -11.40856 -11.12666 -10.99091 -10.85524 -10.72742 -10.54602 -10.38988 -10.19215 -9.94947 -9.39732 -8.94458 -8.68054 -8.27683 -7.74732 -5.95818 -4.00937 2.64488 2.66043 3.32331 3.39326 3.42821 3.67281 4.30888 4.46787 4.60230 4.66757 4.86695 5.15149 5.30750 5.34679 5.38080 5.51007 5.54919 5.56175 5.68327 5.79129 5.82796 5.87239 5.90347 6.06741 6.15053 6.17919 6.27429 6.32472 6.63950 6.64419 6.86944 7.09579 7.17697 7.43000 7.46221 7.62745 7.70509 7.84682 8.06890 8.17741 8.50273 9.02845 9.63534 11.10361 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.038471 B = 0.004329 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.655499 B = 6466.378808 C = 6811.046594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.034 3.966 3 C -0.143 4.143 4 C 0.220 3.780 5 N -0.442 5.442 6 C -0.107 4.107 7 C 0.054 3.946 8 N -0.537 5.537 9 C 0.054 3.946 10 C -0.105 4.105 11 C 0.048 3.952 12 C -0.510 4.510 13 H 0.054 0.946 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.889 3.111 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.107 4.107 21 C 0.062 3.938 22 H 0.081 0.919 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.034 0.966 32 H 0.022 0.978 33 H 0.057 0.943 34 H 0.043 0.957 35 H 0.091 0.909 36 H 0.020 0.980 37 H 0.259 0.741 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.157 11.378 -10.840 15.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.030 3.970 3 C -0.201 4.201 4 C -0.098 4.098 5 N -0.116 5.116 6 C -0.146 4.146 7 C -0.074 4.074 8 N -0.261 5.261 9 C -0.073 4.073 10 C -0.143 4.143 11 C 0.029 3.971 12 C -0.548 4.548 13 H 0.072 0.928 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.717 3.283 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.145 4.145 21 C -0.066 4.066 22 H 0.100 0.900 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.052 0.948 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.110 0.890 36 H 0.038 0.962 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -1.163 10.328 -12.298 16.102 hybrid contribution -0.602 -0.342 1.152 1.344 sum -1.765 9.986 -11.146 15.069 Atomic orbital electron populations 1.21966 0.91596 1.03406 1.03323 1.18321 0.96732 0.94920 0.86995 1.21949 1.02120 0.92766 1.03274 1.29199 0.93089 0.93340 0.94208 1.81194 1.09124 1.09424 1.11879 1.21678 1.02313 0.99644 0.90915 1.22163 0.97356 0.97863 0.90065 1.61961 1.59283 1.03357 1.01543 1.22331 0.96105 0.88681 1.00154 1.21663 0.99040 1.01002 0.92620 1.18682 0.95863 0.89371 0.93182 1.21220 1.21094 0.98544 1.13988 0.92780 1.24960 0.95082 0.97472 0.96477 1.69875 1.30864 1.12599 1.39829 0.86646 0.80017 0.78776 0.82857 1.20826 1.21320 1.19953 1.21681 1.00099 0.98685 0.94010 1.22100 0.97833 0.95832 0.90820 0.90038 0.91930 0.91606 0.91513 0.91982 0.90059 0.90700 0.90119 0.90782 0.94757 0.95938 0.92459 0.93857 0.89044 0.96196 0.93135 0.92489 0.93238 0.92439 0.95825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.08 37.16 0.30 -0.79 16 2 C 0.03 0.30 0.72 -157.29 -0.11 0.19 16 3 C -0.14 -0.99 8.08 37.16 0.30 -0.69 16 4 C 0.22 2.55 13.86 -20.76 -0.29 2.27 16 5 N -0.44 -6.33 18.54 42.15 0.78 -5.55 16 6 C -0.11 -1.15 4.15 -26.73 -0.11 -1.27 16 7 C 0.05 0.63 4.25 -3.82 -0.02 0.62 16 8 N -0.54 -8.70 4.66 -234.66 -1.09 -9.79 16 9 C 0.05 1.01 5.29 -3.83 -0.02 0.99 16 10 C -0.10 -2.42 5.12 -26.65 -0.14 -2.56 16 11 C 0.05 1.16 2.16 -91.65 -0.20 0.96 16 12 C -0.51 -13.88 8.56 -34.44 -0.29 -14.17 16 13 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 14 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 15 N -0.89 -25.23 11.37 55.43 0.63 -24.60 16 16 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 C -0.11 -2.17 5.32 -26.65 -0.14 -2.31 16 21 C 0.06 1.03 5.46 -3.83 -0.02 1.01 16 22 H 0.08 0.55 6.43 -51.93 -0.33 0.21 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.48 6.43 -51.93 -0.33 0.15 16 28 H 0.07 0.90 6.43 -51.93 -0.33 0.56 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.74 6.28 -51.93 -0.33 0.42 16 31 H 0.03 0.39 6.41 -51.93 -0.33 0.05 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.97 6.21 -51.93 -0.32 0.65 16 34 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.09 2.36 6.17 -51.93 -0.32 2.04 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.82 8.02 -51.93 -0.42 0.41 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 319.78 15.07 4.82 4.82 Total: -1.00 -29.43 319.78 -7.63 -37.06 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -6.91 Total: -3.93 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -0.84 Total: -14.19 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.32 Total: -39.94 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.43 -7.63 -37.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397107710.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.421 kcal (2) G-P(sol) polarization free energy of solvation -29.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds