Wall clock time and date at job start Sun Mar 29 2020 22:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35309 * 125.87027 * 2 1 4 4 C 1.35353 * 106.17498 * 179.97438 * 3 2 1 5 5 C 1.50706 * 126.75076 * 179.97438 * 4 3 2 6 6 N 1.46902 * 109.46736 * 94.99777 * 5 4 3 7 7 C 1.46850 * 110.99844 * 45.79377 * 6 5 4 8 8 C 1.53041 * 109.52178 * 185.83527 * 7 6 5 9 9 C 1.53121 * 109.27694 * 300.82044 * 8 7 6 10 10 C 1.53120 * 109.16124 * 57.65364 * 9 8 7 11 11 H 1.09003 * 109.53374 * 62.30998 * 10 9 8 12 12 C 1.50702 * 109.50262 * 182.40432 * 10 9 8 13 13 H 1.07999 * 120.00027 * 119.80084 * 12 10 9 14 14 C 1.37884 * 119.99767 * 299.80646 * 12 10 9 15 15 N 1.31512 * 120.00263 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99876 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46985 * 89.99584 * 16 14 12 18 18 H 1.48497 * 109.47022 * 209.99834 * 16 14 12 19 19 H 1.48508 * 109.46929 * 329.99811 * 16 14 12 20 20 C 1.46847 * 110.99444 * 169.99953 * 6 5 4 21 21 N 1.33775 * 106.49785 * 359.97438 * 4 3 2 22 22 N 1.28637 * 108.88137 * 0.02562 * 21 4 3 23 23 H 1.08993 * 109.47544 * 270.02391 * 1 2 3 24 24 H 1.09000 * 109.47126 * 30.02572 * 1 2 3 25 25 H 1.09003 * 109.47102 * 150.02210 * 1 2 3 26 26 H 1.08002 * 126.91313 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.46953 * 215.00023 * 5 4 3 28 28 H 1.08994 * 109.47138 * 335.00219 * 5 4 3 29 29 H 1.08993 * 109.46270 * 305.85067 * 7 6 5 30 30 H 1.09002 * 109.46611 * 65.82192 * 7 6 5 31 31 H 1.09000 * 109.50022 * 180.87870 * 8 7 6 32 32 H 1.09005 * 109.50237 * 60.76127 * 8 7 6 33 33 H 1.09003 * 109.52020 * 297.74688 * 9 8 7 34 34 H 1.08998 * 109.52135 * 177.55789 * 9 8 7 35 35 H 0.96996 * 120.00319 * 180.02562 * 15 14 12 36 36 H 1.09005 * 109.46557 * 294.17251 * 20 6 5 37 37 H 1.08995 * 109.46502 * 54.14977 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5322 0.6403 0.0006 5 6 4.7881 1.4733 0.0003 6 7 5.2625 1.6443 1.3800 7 6 5.2378 0.3685 2.1069 8 6 5.5976 0.6092 3.5748 9 6 6.9913 1.2381 3.6571 10 6 7.0033 2.5405 2.8520 11 1 6.2956 3.2453 3.2884 12 6 8.3875 3.1358 2.8789 13 1 8.9281 3.2876 1.9563 14 6 8.9638 3.4866 4.0814 15 7 8.3054 3.3021 5.2048 16 14 10.6793 4.2252 4.1147 17 1 10.5838 5.7036 4.0129 18 1 11.3513 3.8590 5.3873 19 1 11.4666 3.7000 2.9702 20 6 6.6028 2.2438 1.4051 21 7 3.4576 -0.6954 0.0015 22 7 2.2191 -1.0431 0.0009 23 1 -0.3634 0.0004 1.0276 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3633 -0.8902 -0.5135 26 1 1.9382 2.1281 0.0004 27 1 5.5563 0.9722 -0.5887 28 1 4.5762 2.4500 -0.4347 29 1 4.2402 -0.0660 2.0441 30 1 5.9606 -0.3163 1.6634 31 1 5.5944 -0.3400 4.1106 32 1 4.8672 1.2831 4.0227 33 1 7.7272 0.5479 3.2445 34 1 7.2338 1.4512 4.6982 35 1 8.7107 3.5492 6.0507 36 1 7.3193 1.5502 0.9649 37 1 6.5965 3.1713 0.8326 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397570486.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:20 Heat of formation + Delta-G solvation = 78.228615 kcal Electronic energy + Delta-G solvation = -18458.050217 eV Core-core repulsion = 15657.599295 eV Total energy + Delta-G solvation = -2800.450922 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.21055 -39.80139 -36.19252 -35.18602 -33.81527 -32.02955 -31.49418 -28.80500 -27.46442 -26.88724 -23.88476 -23.41428 -22.77430 -21.74074 -20.32571 -18.46547 -17.96586 -17.64481 -16.73141 -16.25623 -15.91766 -15.82201 -15.02955 -14.85373 -14.62522 -14.32758 -13.99256 -13.79671 -13.47866 -13.38389 -13.03727 -12.82680 -12.67443 -12.50560 -12.34017 -11.87485 -11.77248 -11.71452 -11.37188 -10.94871 -10.86985 -10.64164 -10.35528 -10.19742 -9.13957 -8.04904 -6.18739 0.68755 1.43694 1.44524 1.45823 1.55176 1.63223 2.46159 3.19430 3.22494 3.41955 3.79744 4.04258 4.18958 4.21292 4.28602 4.37956 4.42545 4.55205 4.63802 4.67183 4.69936 4.76206 4.91006 4.97787 4.99215 5.12095 5.16027 5.19290 5.36607 5.52375 5.66209 5.74225 5.97088 6.11934 6.20602 6.28488 6.47764 6.93740 7.49063 7.52864 9.00120 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.053142 B = 0.004542 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.762154 B = 6162.982730 C = 6325.318164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.289 5.289 3 C -0.016 4.016 4 C -0.036 4.036 5 C 0.139 3.861 6 N -0.536 5.536 7 C 0.080 3.920 8 C -0.109 4.109 9 C -0.103 4.103 10 C 0.054 3.946 11 H 0.003 0.997 12 C -0.535 4.535 13 H 0.054 0.946 14 C 0.014 3.986 15 N -0.917 5.917 16 Si 0.955 3.045 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.269 1.269 20 C 0.080 3.920 21 N -0.305 5.305 22 N -0.121 5.121 23 H 0.103 0.897 24 H 0.133 0.867 25 H 0.107 0.893 26 H 0.232 0.768 27 H 0.038 0.962 28 H 0.117 0.883 29 H 0.066 0.934 30 H 0.014 0.986 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.019 0.981 34 H 0.059 0.941 35 H 0.260 0.740 36 H 0.013 0.987 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.599 -2.711 -10.670 19.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.083 5.083 3 C -0.168 4.168 4 C -0.175 4.175 5 C 0.010 3.990 6 N -0.261 5.261 7 C -0.048 4.048 8 C -0.147 4.147 9 C -0.141 4.141 10 C 0.035 3.965 11 H 0.021 0.979 12 C -0.573 4.573 13 H 0.073 0.927 14 C -0.185 4.185 15 N -0.556 5.556 16 Si 0.781 3.219 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.194 1.194 20 C -0.047 4.047 21 N -0.172 5.172 22 N -0.101 5.101 23 H 0.122 0.878 24 H 0.151 0.849 25 H 0.126 0.874 26 H 0.248 0.752 27 H 0.057 0.943 28 H 0.135 0.865 29 H 0.084 0.916 30 H 0.032 0.968 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.038 0.962 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.032 0.968 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.931 -3.939 -10.263 20.186 hybrid contribution 1.488 0.768 0.058 1.676 sum -15.442 -3.171 -10.204 18.779 Atomic orbital electron populations 1.22735 0.69674 1.07890 1.06527 1.47652 1.11031 1.04136 1.45516 1.23919 0.89647 0.96168 1.07105 1.21977 0.96572 0.90782 1.08155 1.20413 0.90417 0.98487 0.89639 1.62161 1.25906 1.24597 1.13402 1.21844 0.99406 0.89718 0.93836 1.21590 0.97917 0.99592 0.95629 1.21467 0.93673 0.96750 1.02193 1.18581 0.94360 0.92912 0.90639 0.97907 1.21530 1.01884 1.41074 0.92833 0.92744 1.25725 1.01312 0.96100 0.95356 1.70039 1.38942 1.48646 0.97996 0.85607 0.80135 0.78826 0.77374 1.19919 1.21129 1.19361 1.22044 0.86359 0.97520 0.98779 1.75041 1.10567 1.13734 1.17809 1.78177 0.96484 1.13693 1.21719 0.87824 0.84902 0.87397 0.75186 0.94347 0.86480 0.91581 0.96796 0.92276 0.92927 0.96220 0.92216 0.93120 0.96840 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 11.39 127.77 1.46 1.96 16 2 N -0.29 -5.75 3.74 -369.24 -1.38 -7.13 16 3 C -0.02 -0.33 11.55 83.49 0.96 0.64 16 4 C -0.04 -1.04 5.17 41.60 0.22 -0.82 16 5 C 0.14 4.18 5.84 85.56 0.50 4.68 16 6 N -0.54 -20.15 4.80 -900.91 -4.32 -24.47 16 7 C 0.08 3.17 4.91 86.33 0.42 3.60 16 8 C -0.11 -4.68 6.09 30.65 0.19 -4.49 16 9 C -0.10 -5.20 5.03 30.67 0.15 -5.04 16 10 C 0.05 2.80 2.26 -11.49 -0.03 2.77 16 11 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 12 C -0.53 -29.94 8.56 25.60 0.22 -29.72 16 13 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16 14 C 0.01 0.77 5.30 84.66 0.45 1.22 16 15 N -0.92 -53.94 11.36 21.45 0.24 -53.70 16 16 Si 0.95 44.08 29.54 68.60 2.03 46.10 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 20 C 0.08 3.45 4.65 86.33 0.40 3.85 16 21 N -0.30 -10.23 11.18 -48.59 -0.54 -10.77 16 22 N -0.12 -3.53 13.16 37.02 0.49 -3.05 16 23 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.13 0.04 8.14 -2.39 -0.02 0.02 16 25 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.23 2.59 8.06 -2.91 -0.02 2.57 16 27 H 0.04 1.22 8.08 -2.39 -0.02 1.20 16 28 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.07 2.55 5.80 -2.39 -0.01 2.54 16 30 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.05 2.28 8.14 -2.38 -0.02 2.27 16 33 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 3.37 6.17 -2.39 -0.01 3.36 16 35 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 36 H 0.01 0.59 8.14 -2.38 -0.02 0.58 16 37 H 0.07 2.93 8.12 -2.39 -0.02 2.91 16 Total: -1.00 -72.08 299.55 2.49 -69.59 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: 1.04 Total: 4.79 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 4.94 Total: -21.37 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -5.52 Total: -99.11 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -72.08 2.49 -69.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397570486.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.817 kcal (2) G-P(sol) polarization free energy of solvation -72.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds