Wall clock time and date at job start Sun Mar 29 2020 22:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28609 * 124.61526 * 2 1 4 4 C 1.31379 * 108.71563 * 180.11916 * 3 2 1 5 5 C 1.39675 * 105.89962 * 359.61260 * 4 3 2 6 6 C 1.50707 * 127.04640 * 180.26020 * 5 4 3 7 7 N 1.46898 * 109.46911 * 94.99636 * 6 5 4 8 8 C 1.46854 * 111.00255 * 66.04667 * 7 6 5 9 9 C 1.53038 * 109.52405 * 174.15699 * 8 7 6 10 10 C 1.53122 * 109.27588 * 59.17806 * 9 8 7 11 11 C 1.53116 * 109.16214 * 302.34537 * 10 9 8 12 12 H 1.09002 * 109.50333 * 297.71519 * 11 10 9 13 13 C 1.50694 * 109.50319 * 177.59844 * 11 10 9 14 14 H 1.08008 * 120.00224 * 275.20163 * 13 11 10 15 15 C 1.37878 * 120.00279 * 95.20044 * 13 11 10 16 16 N 1.31522 * 120.00096 * 185.50115 * 15 13 11 17 17 Si 1.86803 * 119.99830 * 5.50304 * 15 13 11 18 18 H 1.48501 * 109.47105 * 84.78236 * 17 15 13 19 19 H 1.48504 * 109.46803 * 204.78052 * 17 15 13 20 20 H 1.48497 * 109.47073 * 324.77970 * 17 15 13 21 21 C 1.46841 * 111.00203 * 301.83512 * 7 6 5 22 22 N 1.28596 * 124.62425 * 179.66708 * 2 1 3 23 23 H 1.09003 * 109.46953 * 270.32896 * 1 2 3 24 24 H 1.08995 * 109.47036 * 30.33060 * 1 2 3 25 25 H 1.09000 * 109.46540 * 150.33103 * 1 2 3 26 26 H 1.08001 * 127.04464 * 179.86846 * 4 3 2 27 27 H 1.08994 * 109.46602 * 214.99294 * 6 5 4 28 28 H 1.08990 * 109.47418 * 334.99712 * 6 5 4 29 29 H 1.09000 * 109.45857 * 294.17359 * 8 7 6 30 30 H 1.09001 * 109.46085 * 54.13911 * 8 7 6 31 31 H 1.08994 * 109.50294 * 179.11780 * 9 8 7 32 32 H 1.08997 * 109.50607 * 299.23968 * 9 8 7 33 33 H 1.08999 * 109.52310 * 62.25254 * 10 9 8 34 34 H 1.08998 * 109.52275 * 182.37509 * 10 9 8 35 35 H 0.97000 * 119.99672 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.46085 * 305.85433 * 21 7 6 37 37 H 1.09003 * 109.46560 * 65.82382 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0584 0.0000 4 6 3.4591 0.6985 -0.0026 5 6 3.4592 -0.6982 0.0048 6 6 4.6620 -1.6061 0.0109 7 7 4.9788 -1.9900 1.3929 8 6 3.9117 -2.8201 1.9664 9 6 4.3394 -3.3203 3.3480 10 6 4.6210 -2.1195 4.2555 11 6 5.7013 -1.2457 3.6121 12 1 6.6251 -1.8171 3.5213 13 6 5.9425 -0.0306 4.4700 14 1 5.3144 0.8412 4.3605 15 6 6.9651 -0.0316 5.3949 16 7 7.1086 0.9844 6.2177 17 14 8.1466 -1.4761 5.4794 18 1 9.2322 -1.2864 4.4840 19 1 8.7325 -1.5572 6.8415 20 1 7.4143 -2.7327 5.1799 21 6 5.2341 -0.8057 2.2227 22 7 2.1957 -1.0582 0.0061 23 1 -0.3633 0.0059 1.0277 24 1 -0.3633 0.8870 -0.5189 25 1 -0.3632 -0.8930 -0.5087 26 1 4.3210 1.3493 -0.0053 27 1 4.4453 -2.5000 -0.5739 28 1 5.5135 -1.0841 -0.4254 29 1 3.0016 -2.2277 2.0602 30 1 3.7242 -3.6726 1.3135 31 1 3.5408 -3.9234 3.7799 32 1 5.2418 -3.9242 3.2532 33 1 3.7086 -1.5366 4.3820 34 1 4.9665 -2.4707 5.2277 35 1 7.8282 0.9837 6.8682 36 1 6.0072 -0.1952 1.7561 37 1 4.3178 -0.2227 2.3154 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397614429.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:52 Heat of formation + Delta-G solvation = 107.645455 kcal Electronic energy + Delta-G solvation = -18898.500341 eV Core-core repulsion = 16099.325029 eV Total energy + Delta-G solvation = -2799.175312 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.41421 -38.43934 -34.57170 -33.16575 -32.36485 -31.73517 -30.21798 -28.20130 -25.89737 -24.96349 -22.63394 -22.23895 -21.05717 -20.47431 -18.66277 -17.17725 -16.82547 -16.70810 -15.34324 -14.79629 -14.50952 -14.26127 -13.87547 -13.57917 -13.12256 -13.02115 -12.83039 -12.48536 -12.46592 -12.04453 -11.74081 -11.10460 -11.00856 -10.92002 -10.66644 -10.54102 -10.23211 -10.02939 -9.77659 -9.54520 -9.25643 -9.05124 -8.86412 -8.45332 -7.89375 -6.03577 -4.02692 1.92948 2.41597 2.57738 3.35248 3.42704 3.47402 4.16002 4.47869 4.52325 4.87556 4.88508 5.01644 5.12554 5.27140 5.39810 5.53673 5.67409 5.70546 5.86389 5.97994 6.13387 6.18977 6.25728 6.32395 6.39699 6.48145 6.58312 6.74156 6.80122 6.87543 6.95806 7.34570 7.50336 7.61092 7.62673 7.90668 8.45646 8.57745 9.01443 9.60385 11.09715 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.029052 B = 0.006382 C = 0.005947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.569121 B = 4386.424109 C = 4706.801866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.166 5.166 3 N -0.294 5.294 4 C -0.011 4.011 5 C -0.023 4.023 6 C 0.140 3.860 7 N -0.527 5.527 8 C 0.064 3.936 9 C -0.121 4.121 10 C -0.112 4.112 11 C 0.020 3.980 12 H 0.040 0.960 13 C -0.511 4.511 14 H 0.069 0.931 15 C 0.072 3.928 16 N -0.902 5.902 17 Si 0.879 3.121 18 H -0.275 1.275 19 H -0.292 1.292 20 H -0.263 1.263 21 C 0.071 3.929 22 N -0.285 5.285 23 H 0.086 0.914 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.196 0.804 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.031 0.969 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.263 0.737 36 H 0.069 0.931 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.771 -5.298 -13.206 17.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.067 5.067 3 N -0.135 5.135 4 C -0.194 4.194 5 C -0.188 4.188 6 C 0.009 3.991 7 N -0.250 5.250 8 C -0.064 4.064 9 C -0.159 4.159 10 C -0.150 4.150 11 C 0.001 3.999 12 H 0.058 0.942 13 C -0.549 4.549 14 H 0.087 0.913 15 C -0.130 4.130 16 N -0.540 5.540 17 Si 0.706 3.294 18 H -0.201 1.201 19 H -0.219 1.219 20 H -0.188 1.188 21 C -0.056 4.056 22 N -0.128 5.128 23 H 0.105 0.895 24 H 0.118 0.882 25 H 0.117 0.883 26 H 0.213 0.787 27 H 0.102 0.898 28 H 0.114 0.886 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -10.649 -5.496 -13.045 17.714 hybrid contribution 0.690 -0.018 0.302 0.754 sum -9.958 -5.514 -12.743 17.087 Atomic orbital electron populations 1.22024 0.70845 1.05323 1.04732 1.47899 1.08637 0.99592 1.50565 1.74020 1.04140 1.15981 1.19388 1.24700 0.94326 0.94956 1.05462 1.24360 0.93621 0.95202 1.05633 1.20727 0.89979 0.95872 0.92491 1.62467 1.40759 1.20743 1.01034 1.21994 0.92334 0.96202 0.95905 1.21697 1.00433 0.98889 0.94865 1.21856 1.00115 0.95066 0.97948 1.19158 0.94442 0.95489 0.90821 0.94213 1.20951 1.15696 0.99816 1.18439 0.91260 1.25053 0.97353 0.95697 0.94872 1.69924 1.32335 1.31250 1.20524 0.86826 0.81622 0.83981 0.76930 1.20097 1.21889 1.18765 1.22284 0.99017 0.89492 0.94758 1.74003 1.03714 1.15619 1.19424 0.89547 0.88250 0.88266 0.78716 0.89780 0.88585 0.95057 0.91984 0.93065 0.91949 0.93607 0.93014 0.92734 0.91277 0.95674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.96 11.57 59.85 0.69 1.65 16 2 N -0.17 -2.38 4.35 -16.64 -0.07 -2.45 16 3 N -0.29 -4.63 12.05 30.67 0.37 -4.26 16 4 C -0.01 -0.17 11.29 -17.21 -0.19 -0.37 16 5 C -0.02 -0.36 4.88 -82.25 -0.40 -0.76 16 6 C 0.14 2.00 5.96 -4.97 -0.03 1.97 16 7 N -0.53 -9.22 4.86 -236.11 -1.15 -10.37 16 8 C 0.06 1.09 5.10 -3.83 -0.02 1.07 16 9 C -0.12 -2.19 6.09 -26.65 -0.16 -2.35 16 10 C -0.11 -2.44 5.27 -26.61 -0.14 -2.58 16 11 C 0.02 0.48 1.94 -91.70 -0.18 0.30 16 12 H 0.04 0.97 5.27 -51.93 -0.27 0.70 16 13 C -0.51 -14.34 8.86 -34.44 -0.31 -14.65 16 14 H 0.07 2.13 8.06 -52.48 -0.42 1.71 16 15 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 16 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 17 Si 0.88 21.79 27.01 -169.99 -4.59 17.20 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.26 -6.29 6.80 56.52 0.38 -5.91 16 21 C 0.07 1.46 4.12 -3.84 -0.02 1.45 16 22 N -0.28 -4.43 11.25 33.72 0.38 -4.05 16 23 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.20 2.55 8.06 -52.49 -0.42 2.13 16 27 H 0.08 1.08 8.06 -51.93 -0.42 0.66 16 28 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.03 0.58 6.89 -51.93 -0.36 0.22 16 30 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.07 1.39 8.12 -51.93 -0.42 0.97 16 37 H 0.02 0.55 6.75 -51.93 -0.35 0.20 16 LS Contribution 297.77 15.07 4.49 4.49 Total: -1.00 -33.12 297.77 -6.27 -39.39 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -5.62 Total: -0.74 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -0.85 Total: -12.29 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: 0.30 Total: -48.05 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.59 Total: 17.20 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.12 -6.27 -39.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397614429.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.038 kcal (2) G-P(sol) polarization free energy of solvation -33.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds