Wall clock time and date at job start Sun Mar 29 2020 22:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28609 * 124.61526 * 2 1 4 4 C 1.31379 * 108.71563 * 180.11916 * 3 2 1 5 5 C 1.39675 * 105.89962 * 359.61260 * 4 3 2 6 6 C 1.50707 * 127.04640 * 180.26020 * 5 4 3 7 7 N 1.46898 * 109.46911 * 94.99636 * 6 5 4 8 8 C 1.46854 * 111.00255 * 66.04667 * 7 6 5 9 9 C 1.53038 * 109.52405 * 174.15699 * 8 7 6 10 10 C 1.53122 * 109.27588 * 59.17806 * 9 8 7 11 11 C 1.53116 * 109.16214 * 302.34537 * 10 9 8 12 12 H 1.09002 * 109.50333 * 297.71519 * 11 10 9 13 13 C 1.50694 * 109.50319 * 177.59844 * 11 10 9 14 14 H 1.08008 * 120.00224 * 275.20163 * 13 11 10 15 15 C 1.37878 * 120.00279 * 95.20044 * 13 11 10 16 16 N 1.31522 * 120.00096 * 185.50115 * 15 13 11 17 17 Si 1.86803 * 119.99830 * 5.50304 * 15 13 11 18 18 H 1.48501 * 109.47105 * 84.78236 * 17 15 13 19 19 H 1.48504 * 109.46803 * 204.78052 * 17 15 13 20 20 H 1.48497 * 109.47073 * 324.77970 * 17 15 13 21 21 C 1.46841 * 111.00203 * 301.83512 * 7 6 5 22 22 N 1.28596 * 124.62425 * 179.66708 * 2 1 3 23 23 H 1.09003 * 109.46953 * 270.32896 * 1 2 3 24 24 H 1.08995 * 109.47036 * 30.33060 * 1 2 3 25 25 H 1.09000 * 109.46540 * 150.33103 * 1 2 3 26 26 H 1.08001 * 127.04464 * 179.86846 * 4 3 2 27 27 H 1.08994 * 109.46602 * 214.99294 * 6 5 4 28 28 H 1.08990 * 109.47418 * 334.99712 * 6 5 4 29 29 H 1.09000 * 109.45857 * 294.17359 * 8 7 6 30 30 H 1.09001 * 109.46085 * 54.13911 * 8 7 6 31 31 H 1.08994 * 109.50294 * 179.11780 * 9 8 7 32 32 H 1.08997 * 109.50607 * 299.23968 * 9 8 7 33 33 H 1.08999 * 109.52310 * 62.25254 * 10 9 8 34 34 H 1.08998 * 109.52275 * 182.37509 * 10 9 8 35 35 H 0.97000 * 119.99672 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.46085 * 305.85433 * 21 7 6 37 37 H 1.09003 * 109.46560 * 65.82382 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0584 0.0000 4 6 3.4591 0.6985 -0.0026 5 6 3.4592 -0.6982 0.0048 6 6 4.6620 -1.6061 0.0109 7 7 4.9788 -1.9900 1.3929 8 6 3.9117 -2.8201 1.9664 9 6 4.3394 -3.3203 3.3480 10 6 4.6210 -2.1195 4.2555 11 6 5.7013 -1.2457 3.6121 12 1 6.6251 -1.8171 3.5213 13 6 5.9425 -0.0306 4.4700 14 1 5.3144 0.8412 4.3605 15 6 6.9651 -0.0316 5.3949 16 7 7.1086 0.9844 6.2177 17 14 8.1466 -1.4761 5.4794 18 1 9.2322 -1.2864 4.4840 19 1 8.7325 -1.5572 6.8415 20 1 7.4143 -2.7327 5.1799 21 6 5.2341 -0.8057 2.2227 22 7 2.1957 -1.0582 0.0061 23 1 -0.3633 0.0059 1.0277 24 1 -0.3633 0.8870 -0.5189 25 1 -0.3632 -0.8930 -0.5087 26 1 4.3210 1.3493 -0.0053 27 1 4.4453 -2.5000 -0.5739 28 1 5.5135 -1.0841 -0.4254 29 1 3.0016 -2.2277 2.0602 30 1 3.7242 -3.6726 1.3135 31 1 3.5408 -3.9234 3.7799 32 1 5.2418 -3.9242 3.2532 33 1 3.7086 -1.5366 4.3820 34 1 4.9665 -2.4707 5.2277 35 1 7.8282 0.9837 6.8682 36 1 6.0072 -0.1952 1.7561 37 1 4.3178 -0.2227 2.3154 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397614429.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:52 Heat of formation + Delta-G solvation = 83.180471 kcal Electronic energy + Delta-G solvation = -18899.561222 eV Core-core repulsion = 16099.325029 eV Total energy + Delta-G solvation = -2800.236193 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.52776 -39.93653 -36.03516 -34.66757 -33.83692 -33.08371 -31.97443 -29.28255 -27.19866 -26.79958 -24.02435 -23.51068 -22.59440 -21.74618 -20.32251 -18.96619 -18.16645 -17.84463 -16.88219 -16.19040 -15.88000 -15.67870 -15.37610 -15.09072 -14.61613 -14.39657 -14.17310 -13.83826 -13.59297 -13.46220 -13.07190 -12.92619 -12.78341 -12.47658 -11.99604 -11.86640 -11.79402 -11.73248 -11.33736 -11.25016 -11.04297 -10.83103 -10.62225 -10.10792 -9.32463 -8.26937 -6.30882 0.80460 1.39916 1.40174 1.41082 1.52745 1.53182 2.39056 3.03495 3.11904 3.25286 3.82907 4.10764 4.17264 4.20977 4.25828 4.31008 4.36753 4.46006 4.51474 4.60331 4.74088 4.82126 4.88481 4.89655 4.99712 5.06390 5.09860 5.22765 5.23336 5.27642 5.56170 5.66516 5.74989 5.78346 6.13967 6.24217 6.39021 6.77036 7.32407 7.35684 8.90230 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.029052 B = 0.006382 C = 0.005947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.569121 B = 4386.424109 C = 4706.801866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.165 5.165 3 N -0.314 5.314 4 C -0.028 4.028 5 C -0.034 4.034 6 C 0.141 3.859 7 N -0.526 5.526 8 C 0.067 3.933 9 C -0.114 4.114 10 C -0.110 4.110 11 C 0.018 3.982 12 H 0.041 0.959 13 C -0.514 4.514 14 H 0.022 0.978 15 C 0.013 3.987 16 N -0.952 5.952 17 Si 0.946 3.054 18 H -0.263 1.263 19 H -0.291 1.291 20 H -0.245 1.245 21 C 0.088 3.912 22 N -0.293 5.293 23 H 0.094 0.906 24 H 0.119 0.881 25 H 0.122 0.878 26 H 0.207 0.793 27 H 0.107 0.893 28 H 0.115 0.885 29 H 0.016 0.984 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.027 0.973 34 H 0.039 0.961 35 H 0.265 0.735 36 H 0.069 0.931 37 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.874 -7.811 -14.839 19.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.067 5.067 3 N -0.156 5.156 4 C -0.210 4.210 5 C -0.198 4.198 6 C 0.011 3.989 7 N -0.249 5.249 8 C -0.061 4.061 9 C -0.151 4.151 10 C -0.148 4.148 11 C -0.001 4.001 12 H 0.059 0.941 13 C -0.553 4.553 14 H 0.041 0.959 15 C -0.184 4.184 16 N -0.592 5.592 17 Si 0.770 3.230 18 H -0.188 1.188 19 H -0.218 1.218 20 H -0.169 1.169 21 C -0.040 4.040 22 N -0.137 5.137 23 H 0.112 0.888 24 H 0.137 0.863 25 H 0.140 0.860 26 H 0.223 0.777 27 H 0.125 0.875 28 H 0.133 0.867 29 H 0.034 0.966 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -10.773 -8.021 -14.707 19.917 hybrid contribution 0.568 0.859 0.797 1.302 sum -10.205 -7.161 -13.910 18.679 Atomic orbital electron populations 1.22503 0.68204 1.07507 1.05933 1.48451 1.10127 0.98918 1.49180 1.73987 1.04616 1.16897 1.20087 1.25010 0.94761 0.95560 1.05679 1.24481 0.93997 0.95262 1.06075 1.20882 0.90369 0.97009 0.90610 1.62412 1.41367 1.19111 1.02000 1.22010 0.91386 0.96752 0.95927 1.21648 1.01737 0.97174 0.94589 1.21732 0.98490 0.96336 0.98275 1.19127 0.95253 0.93747 0.92020 0.94111 1.21204 1.14749 1.00102 1.19212 0.95916 1.25949 0.99315 0.98741 0.94377 1.70078 1.33524 1.33862 1.21784 0.85752 0.79348 0.80761 0.77165 1.18761 1.21772 1.16864 1.21893 0.97885 0.90463 0.93729 1.73949 1.03956 1.16214 1.19624 0.88773 0.86296 0.86009 0.77658 0.87498 0.86730 0.96603 0.89012 0.90617 0.91201 0.95399 0.94225 0.92608 0.91270 0.97840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.50 11.57 127.77 1.48 2.97 16 2 N -0.16 -4.49 4.35 -206.55 -0.90 -5.39 16 3 N -0.31 -9.73 12.05 -56.87 -0.69 -10.41 16 4 C -0.03 -0.85 11.29 85.11 0.96 0.11 16 5 C -0.03 -1.00 4.88 42.98 0.21 -0.79 16 6 C 0.14 3.64 5.96 85.56 0.51 4.15 16 7 N -0.53 -17.08 4.86 -900.93 -4.38 -21.45 16 8 C 0.07 2.09 5.10 86.32 0.44 2.53 16 9 C -0.11 -3.78 6.09 30.65 0.19 -3.59 16 10 C -0.11 -4.73 5.27 30.67 0.16 -4.57 16 11 C 0.02 0.84 1.94 -11.49 -0.02 0.81 16 12 H 0.04 1.91 5.27 -2.39 -0.01 1.90 16 13 C -0.51 -29.79 8.86 25.60 0.23 -29.56 16 14 H 0.02 1.48 8.06 -2.91 -0.02 1.45 16 15 C 0.01 0.76 5.47 84.65 0.46 1.22 16 16 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 17 Si 0.95 44.75 27.01 68.60 1.85 46.60 16 18 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 20 H -0.25 -10.80 6.80 99.48 0.68 -10.12 16 21 C 0.09 3.56 4.12 86.33 0.36 3.92 16 22 N -0.29 -8.62 11.25 -47.24 -0.53 -9.16 16 23 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.21 5.38 8.06 -2.91 -0.02 5.36 16 27 H 0.11 2.32 8.06 -2.39 -0.02 2.30 16 28 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.02 0.55 6.89 -2.39 -0.02 0.53 16 30 H 0.09 2.38 8.06 -2.39 -0.02 2.36 16 31 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 36 H 0.07 2.75 8.12 -2.39 -0.02 2.73 16 37 H 0.00 0.15 6.75 -2.39 -0.02 0.13 16 Total: -1.00 -72.99 297.77 1.65 -71.34 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 1.01 Total: 11.26 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 4.97 Total: -22.79 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -6.19 Total: -106.41 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.85 Total: 46.60 kcal Total: -72.99 1.65 -71.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397614429.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.523 kcal (2) G-P(sol) polarization free energy of solvation -72.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds