Wall clock time and date at job start Sun Mar 29 2020 22:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46927 * 2 1 4 4 C 1.47196 * 109.46957 * 240.00532 * 2 1 3 5 5 N 2.60802 * 109.46972 * 240.00409 * 2 1 3 6 6 C 1.52997 * 109.47249 * 120.00084 * 2 1 3 7 7 C 1.53001 * 109.47186 * 300.00185 * 6 2 1 8 8 N 1.46900 * 109.47139 * 180.02562 * 7 6 2 9 9 C 1.46929 * 110.98461 * 314.22850 * 8 7 6 10 10 C 1.53037 * 109.47910 * 174.18240 * 9 8 7 11 11 C 1.53114 * 109.31211 * 59.15772 * 10 9 8 12 12 C 1.53126 * 109.16239 * 302.32855 * 11 10 9 13 13 H 1.09006 * 109.49902 * 297.71480 * 12 11 10 14 14 C 1.50701 * 109.50570 * 177.63534 * 12 11 10 15 15 H 1.07997 * 119.99755 * 239.99967 * 14 12 11 16 16 C 1.37878 * 119.99737 * 59.99836 * 14 12 11 17 17 N 1.31516 * 120.00292 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99547 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47458 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47203 * 120.00151 * 18 16 14 21 21 H 1.48498 * 109.47266 * 239.99988 * 18 16 14 22 22 C 1.46850 * 110.99740 * 190.00065 * 8 7 6 23 23 H 1.09003 * 109.47003 * 299.99948 * 1 2 3 24 24 H 1.09001 * 109.47418 * 59.99641 * 1 2 3 25 25 H 1.09003 * 109.47202 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47115 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47365 * 300.00392 * 3 2 1 28 28 H 1.09005 * 109.46900 * 59.99783 * 3 2 1 29 29 H 1.08995 * 109.46885 * 180.02562 * 6 2 1 30 30 H 1.08998 * 109.47284 * 60.00270 * 6 2 1 31 31 H 1.08995 * 109.46922 * 59.99790 * 7 6 2 32 32 H 1.09003 * 109.46861 * 299.99800 * 7 6 2 33 33 H 1.08994 * 109.51866 * 54.15475 * 9 8 7 34 34 H 1.09007 * 109.45009 * 294.16157 * 9 8 7 35 35 H 1.09002 * 109.50283 * 299.19589 * 10 9 8 36 36 H 1.09003 * 109.50113 * 179.11776 * 10 9 8 37 37 H 1.09006 * 109.52545 * 62.23190 * 11 10 9 38 38 H 1.08997 * 109.52864 * 182.35913 * 11 10 9 39 39 H 0.97001 * 119.99786 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.46198 * 65.82029 * 22 8 7 41 41 H 1.08999 * 109.45191 * 305.84745 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6938 -1.2019 5 7 2.3993 -1.2293 -2.1295 6 6 2.0400 -0.7212 1.2492 7 6 1.5300 -0.0001 2.4985 8 7 2.0202 -0.6922 3.6979 9 6 1.8446 -2.1458 3.5753 10 6 2.4951 -2.8413 4.7733 11 6 1.8466 -2.3367 6.0652 12 6 2.0012 -0.8153 6.1443 13 1 3.0600 -0.5587 6.1821 14 6 1.3148 -0.3035 7.3845 15 1 0.5069 0.4081 7.2998 16 6 1.7183 -0.7439 8.6272 17 7 2.7018 -1.6110 8.7302 18 14 0.8679 -0.1090 10.1644 19 1 -0.1988 0.8498 9.7799 20 1 0.2662 -1.2479 10.9034 21 1 1.8599 0.5753 11.0321 22 6 1.3648 -0.1777 4.9071 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 3.1300 -0.7208 1.2494 30 1 1.6768 -1.7489 1.2492 31 1 0.4401 -0.0001 2.4984 32 1 1.8934 1.0276 2.4985 33 1 2.3140 -2.4930 2.6549 34 1 0.7808 -2.3822 3.5517 35 1 3.5616 -2.6165 4.7895 36 1 2.3515 -3.9186 4.6907 37 1 0.7877 -2.5957 6.0666 38 1 2.3356 -2.7985 6.9229 39 1 2.9858 -1.9205 9.6045 40 1 0.3033 -0.4233 4.8773 41 1 1.4861 0.9045 4.9532 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397623382.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:20 Heat of formation + Delta-G solvation = 8.203506 kcal Electronic energy + Delta-G solvation = -18642.375516 eV Core-core repulsion = 15942.428421 eV Total energy + Delta-G solvation = -2699.947095 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.20988 -37.69279 -35.47955 -33.57566 -31.69847 -30.03944 -28.17608 -27.65561 -25.17326 -24.72705 -22.52137 -21.68977 -19.92987 -18.61281 -17.32170 -16.28837 -15.29627 -15.15659 -14.86070 -14.40310 -14.15951 -13.78503 -13.64663 -13.22197 -13.03528 -12.81991 -12.56454 -12.34278 -12.26476 -12.10048 -11.98549 -11.56565 -11.34956 -11.10866 -11.02811 -10.95437 -10.84236 -10.59641 -10.45758 -10.02147 -9.80886 -9.45355 -9.02066 -8.68455 -8.29732 -7.64741 -5.97029 -4.03258 2.61365 2.63033 3.29960 3.38285 3.41421 3.65758 4.32082 4.47586 4.58643 4.67051 4.86881 5.17518 5.27018 5.33214 5.38400 5.52596 5.55192 5.57464 5.66208 5.79861 5.81188 5.85810 5.89698 6.07876 6.15620 6.17395 6.30093 6.42394 6.51528 6.72567 6.76222 6.97719 7.22643 7.39805 7.41816 7.66157 7.75968 7.82496 8.09340 8.18578 8.48662 9.01249 9.61202 11.08871 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.042025 B = 0.004386 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.112342 B = 6382.541931 C = 6756.085878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.034 3.966 3 C -0.144 4.144 4 C 0.220 3.780 5 N -0.443 5.443 6 C -0.113 4.113 7 C 0.054 3.946 8 N -0.538 5.538 9 C 0.056 3.944 10 C -0.118 4.118 11 C -0.111 4.111 12 C 0.054 3.946 13 H 0.034 0.966 14 C -0.514 4.514 15 H 0.054 0.946 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.889 3.111 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.069 3.931 23 H 0.082 0.918 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.022 0.978 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.029 0.971 38 H 0.090 0.910 39 H 0.259 0.741 40 H 0.019 0.981 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.510 3.384 -13.576 14.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.030 3.970 3 C -0.202 4.202 4 C -0.098 4.098 5 N -0.117 5.117 6 C -0.151 4.151 7 C -0.074 4.074 8 N -0.263 5.263 9 C -0.072 4.072 10 C -0.156 4.156 11 C -0.149 4.149 12 C 0.035 3.965 13 H 0.052 0.948 14 C -0.553 4.553 15 H 0.072 0.928 16 C -0.139 4.139 17 N -0.527 5.527 18 Si 0.717 3.283 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.058 4.058 23 H 0.101 0.899 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.048 0.952 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.037 0.963 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.334 2.566 -14.812 15.213 hybrid contribution -1.453 0.256 1.139 1.864 sum -3.787 2.821 -13.673 14.465 Atomic orbital electron populations 1.21971 0.91568 1.03265 1.03496 1.18330 0.96751 0.95046 0.86857 1.21961 1.02158 0.92644 1.03438 1.29232 0.93038 0.93294 0.94222 1.81196 1.09183 1.09559 1.11803 1.21845 1.02353 0.99513 0.91431 1.22208 0.97369 0.98582 0.89234 1.62103 1.58294 1.03818 1.02071 1.22170 0.97914 0.88328 0.98770 1.21683 1.00605 0.97288 0.96055 1.21651 0.97943 0.99538 0.95740 1.18671 0.96811 0.91308 0.89705 0.94768 1.21189 1.17954 1.25311 0.90837 0.92797 1.24935 0.94999 0.95056 0.98872 1.69903 1.27675 1.31473 1.23633 0.86585 0.79540 0.78713 0.83422 1.19859 1.21140 1.21058 1.22302 0.95004 0.98781 0.89731 0.89882 0.91886 0.91766 0.91482 0.91987 0.89816 0.90078 0.90692 0.94765 0.90442 0.91886 0.95937 0.92124 0.93671 0.95236 0.89172 0.93133 0.96261 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.08 37.16 0.30 -0.78 16 2 C 0.03 0.30 0.72 -157.30 -0.11 0.19 16 3 C -0.14 -1.06 8.08 37.16 0.30 -0.76 16 4 C 0.22 2.49 13.86 -20.76 -0.29 2.20 16 5 N -0.44 -6.16 18.54 42.16 0.78 -5.38 16 6 C -0.11 -1.19 3.47 -26.73 -0.09 -1.28 16 7 C 0.05 0.67 4.57 -3.82 -0.02 0.65 16 8 N -0.54 -9.09 4.81 -234.60 -1.13 -10.22 16 9 C 0.06 0.92 4.85 -3.79 -0.02 0.90 16 10 C -0.12 -2.25 6.09 -26.65 -0.16 -2.42 16 11 C -0.11 -2.56 5.02 -26.61 -0.13 -2.70 16 12 C 0.05 1.31 2.26 -91.69 -0.21 1.10 16 13 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 14 C -0.51 -13.77 8.57 -34.44 -0.29 -14.07 16 15 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 16 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 17 N -0.89 -25.02 11.35 55.43 0.63 -24.39 16 18 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.07 1.38 4.65 -3.83 -0.02 1.36 16 23 H 0.08 0.58 6.43 -51.93 -0.33 0.25 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.56 6.43 -51.93 -0.33 0.22 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.82 6.21 -51.93 -0.32 0.50 16 31 H 0.03 0.41 6.37 -51.93 -0.33 0.07 16 32 H 0.08 0.89 6.43 -51.93 -0.33 0.55 16 33 H 0.06 0.90 5.82 -51.93 -0.30 0.60 16 34 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 2.36 6.15 -51.93 -0.32 2.04 16 39 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 1.17 8.12 -51.93 -0.42 0.74 16 LS Contribution 318.64 15.07 4.80 4.80 Total: -1.00 -29.09 318.64 -7.67 -36.76 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -6.89 Total: -3.46 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -0.84 Total: -13.99 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.28 Total: -39.99 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.09 -7.67 -36.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397623382.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.961 kcal (2) G-P(sol) polarization free energy of solvation -29.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds