Wall clock time and date at job start Sun Mar 29 2020 22:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46927 * 2 1 4 4 C 1.47196 * 109.46957 * 240.00532 * 2 1 3 5 5 N 2.60802 * 109.46972 * 240.00409 * 2 1 3 6 6 C 1.52997 * 109.47249 * 120.00084 * 2 1 3 7 7 C 1.53001 * 109.47186 * 300.00185 * 6 2 1 8 8 N 1.46900 * 109.47139 * 180.02562 * 7 6 2 9 9 C 1.46929 * 110.98461 * 314.22850 * 8 7 6 10 10 C 1.53037 * 109.47910 * 174.18240 * 9 8 7 11 11 C 1.53114 * 109.31211 * 59.15772 * 10 9 8 12 12 C 1.53126 * 109.16239 * 302.32855 * 11 10 9 13 13 H 1.09006 * 109.49902 * 297.71480 * 12 11 10 14 14 C 1.50701 * 109.50570 * 177.63534 * 12 11 10 15 15 H 1.07997 * 119.99755 * 239.99967 * 14 12 11 16 16 C 1.37878 * 119.99737 * 59.99836 * 14 12 11 17 17 N 1.31516 * 120.00292 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99547 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47458 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47203 * 120.00151 * 18 16 14 21 21 H 1.48498 * 109.47266 * 239.99988 * 18 16 14 22 22 C 1.46850 * 110.99740 * 190.00065 * 8 7 6 23 23 H 1.09003 * 109.47003 * 299.99948 * 1 2 3 24 24 H 1.09001 * 109.47418 * 59.99641 * 1 2 3 25 25 H 1.09003 * 109.47202 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47115 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47365 * 300.00392 * 3 2 1 28 28 H 1.09005 * 109.46900 * 59.99783 * 3 2 1 29 29 H 1.08995 * 109.46885 * 180.02562 * 6 2 1 30 30 H 1.08998 * 109.47284 * 60.00270 * 6 2 1 31 31 H 1.08995 * 109.46922 * 59.99790 * 7 6 2 32 32 H 1.09003 * 109.46861 * 299.99800 * 7 6 2 33 33 H 1.08994 * 109.51866 * 54.15475 * 9 8 7 34 34 H 1.09007 * 109.45009 * 294.16157 * 9 8 7 35 35 H 1.09002 * 109.50283 * 299.19589 * 10 9 8 36 36 H 1.09003 * 109.50113 * 179.11776 * 10 9 8 37 37 H 1.09006 * 109.52545 * 62.23190 * 11 10 9 38 38 H 1.08997 * 109.52864 * 182.35913 * 11 10 9 39 39 H 0.97001 * 119.99786 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.46198 * 65.82029 * 22 8 7 41 41 H 1.08999 * 109.45191 * 305.84745 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6938 -1.2019 5 7 2.3993 -1.2293 -2.1295 6 6 2.0400 -0.7212 1.2492 7 6 1.5300 -0.0001 2.4985 8 7 2.0202 -0.6922 3.6979 9 6 1.8446 -2.1458 3.5753 10 6 2.4951 -2.8413 4.7733 11 6 1.8466 -2.3367 6.0652 12 6 2.0012 -0.8153 6.1443 13 1 3.0600 -0.5587 6.1821 14 6 1.3148 -0.3035 7.3845 15 1 0.5069 0.4081 7.2998 16 6 1.7183 -0.7439 8.6272 17 7 2.7018 -1.6110 8.7302 18 14 0.8679 -0.1090 10.1644 19 1 -0.1988 0.8498 9.7799 20 1 0.2662 -1.2479 10.9034 21 1 1.8599 0.5753 11.0321 22 6 1.3648 -0.1777 4.9071 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 3.1300 -0.7208 1.2494 30 1 1.6768 -1.7489 1.2492 31 1 0.4401 -0.0001 2.4984 32 1 1.8934 1.0276 2.4985 33 1 2.3140 -2.4930 2.6549 34 1 0.7808 -2.3822 3.5517 35 1 3.5616 -2.6165 4.7895 36 1 2.3515 -3.9186 4.6907 37 1 0.7877 -2.5957 6.0666 38 1 2.3356 -2.7985 6.9229 39 1 2.9858 -1.9205 9.6045 40 1 0.3033 -0.4233 4.8773 41 1 1.4861 0.9045 4.9532 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397623382.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:19 Heat of formation + Delta-G solvation = -8.645425 kcal Electronic energy + Delta-G solvation = -18643.106140 eV Core-core repulsion = 15942.428421 eV Total energy + Delta-G solvation = -2700.677719 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.30145 -38.89556 -36.56030 -35.21913 -33.32289 -31.71166 -29.31118 -28.22026 -26.87801 -25.92753 -23.82211 -23.26525 -21.14563 -20.24372 -18.44571 -17.98690 -16.68744 -16.30377 -16.05739 -15.73010 -15.20769 -15.03542 -14.87986 -14.50908 -14.27771 -14.07232 -14.00483 -13.68769 -13.25798 -13.07094 -12.97518 -12.83529 -12.68994 -12.54061 -12.50822 -12.13205 -11.96021 -11.88556 -11.64869 -11.62981 -11.34139 -11.29401 -10.76213 -10.57552 -10.32272 -8.97202 -8.03781 -6.17615 1.43102 1.45272 1.56058 1.72453 1.76241 2.46304 2.83493 3.21897 3.23605 3.88051 3.91738 4.05546 4.25146 4.29245 4.34268 4.47221 4.55371 4.69079 4.78322 4.82750 4.85745 4.90161 4.97021 4.99789 5.04901 5.09917 5.11124 5.20916 5.22286 5.27158 5.40642 5.45457 5.48071 5.59381 5.68741 6.03539 6.19408 6.28246 6.48628 6.52723 6.55914 6.96830 7.50538 9.00810 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.042025 B = 0.004386 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.112342 B = 6382.541931 C = 6756.085878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.043 3.957 3 C -0.144 4.144 4 C 0.242 3.758 5 N -0.492 5.492 6 C -0.106 4.106 7 C 0.055 3.945 8 N -0.551 5.551 9 C 0.061 3.939 10 C -0.114 4.114 11 C -0.104 4.104 12 C 0.050 3.950 13 H -0.005 1.005 14 C -0.532 4.532 15 H 0.054 0.946 16 C 0.012 3.988 17 N -0.917 5.917 18 Si 0.953 3.047 19 H -0.265 1.265 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.083 3.917 23 H 0.092 0.908 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.028 0.972 35 H 0.047 0.953 36 H 0.064 0.936 37 H 0.022 0.978 38 H 0.053 0.947 39 H 0.258 0.742 40 H 0.018 0.982 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.789 4.312 -14.655 16.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.039 3.961 3 C -0.203 4.203 4 C -0.075 4.075 5 N -0.167 5.167 6 C -0.145 4.145 7 C -0.072 4.072 8 N -0.276 5.276 9 C -0.067 4.067 10 C -0.152 4.152 11 C -0.142 4.142 12 C 0.031 3.969 13 H 0.014 0.986 14 C -0.571 4.571 15 H 0.072 0.928 16 C -0.186 4.186 17 N -0.557 5.557 18 Si 0.779 3.221 19 H -0.189 1.189 20 H -0.209 1.209 21 H -0.208 1.208 22 C -0.044 4.044 23 H 0.111 0.889 24 H 0.093 0.907 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.113 0.887 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.041 0.959 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.037 0.963 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.619 3.502 -15.910 16.688 hybrid contribution -1.029 -0.026 1.479 1.802 sum -4.647 3.476 -14.431 15.555 Atomic orbital electron populations 1.22008 0.90158 1.03522 1.04615 1.18405 0.97675 0.95294 0.84761 1.22004 1.02024 0.91600 1.04623 1.29672 0.91682 0.92159 0.93996 1.81222 1.10874 1.11155 1.13476 1.21740 1.01994 0.99455 0.91325 1.22303 0.98287 0.98886 0.87706 1.62002 1.58611 1.04316 1.02637 1.22147 0.98172 0.87957 0.98398 1.21607 0.99617 0.98751 0.95183 1.21459 0.97301 0.98760 0.96726 1.18612 0.94555 0.92374 0.91373 0.98638 1.21593 1.18019 1.25261 0.92210 0.92764 1.25724 0.95673 0.95310 1.01934 1.70055 1.28958 1.32527 1.24159 0.85589 0.78635 0.78223 0.79688 1.18885 1.20915 1.20839 1.21948 0.94494 0.98509 0.89485 0.88881 0.90705 0.91996 0.91845 0.90801 0.88687 0.90663 0.90806 0.93343 0.89155 0.89056 0.95376 0.93370 0.91784 0.95931 0.92812 0.93243 0.96346 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.08 71.98 0.58 -1.09 16 2 C 0.04 0.62 0.72 -53.99 -0.04 0.58 16 3 C -0.14 -1.67 8.08 71.98 0.58 -1.09 16 4 C 0.24 4.99 13.86 89.44 1.24 6.23 16 5 N -0.49 -13.13 18.54 20.01 0.37 -12.76 16 6 C -0.11 -1.93 3.47 30.59 0.11 -1.82 16 7 C 0.06 1.20 4.57 86.30 0.39 1.59 16 8 N -0.55 -17.59 4.81 -896.13 -4.31 -21.90 16 9 C 0.06 1.88 4.85 86.31 0.42 2.30 16 10 C -0.11 -4.27 6.09 30.64 0.19 -4.09 16 11 C -0.10 -4.93 5.02 30.67 0.15 -4.77 16 12 C 0.05 2.46 2.26 -11.48 -0.03 2.44 16 13 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 14 C -0.53 -28.91 8.57 25.60 0.22 -28.69 16 15 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 16 C 0.01 0.66 5.30 84.65 0.45 1.11 16 17 N -0.92 -53.16 11.35 21.45 0.24 -52.92 16 18 Si 0.95 43.18 29.54 68.60 2.03 45.20 16 19 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 C 0.08 3.26 4.65 86.33 0.40 3.66 16 23 H 0.09 0.93 6.43 -2.39 -0.02 0.91 16 24 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.09 0.92 6.43 -2.38 -0.02 0.90 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.07 1.38 6.21 -2.39 -0.01 1.36 16 31 H 0.05 0.96 6.37 -2.39 -0.02 0.94 16 32 H 0.09 1.76 6.43 -2.39 -0.02 1.74 16 33 H 0.09 2.34 5.82 -2.39 -0.01 2.33 16 34 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.05 2.92 6.15 -2.39 -0.01 2.90 16 39 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 40 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.06 2.36 8.12 -2.39 -0.02 2.34 16 Total: -1.00 -64.23 318.64 3.99 -60.24 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 0.99 Total: 5.78 kcal Atomic # 6 Polarization: -28.31 SS G_CDS: 4.67 Total: -23.65 kcal Atomic # 7 Polarization: -83.88 SS G_CDS: -3.69 Total: -87.58 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -64.23 3.99 -60.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397623382.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.593 kcal (2) G-P(sol) polarization free energy of solvation -64.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds