Wall clock time and date at job start Sun Mar 29 2020 22:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47093 * 5.00881 * 3 2 1 5 5 C 1.52997 * 109.47127 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47131 * 180.02562 * 5 4 3 7 7 N 1.46905 * 109.47327 * 180.02562 * 6 5 4 8 8 C 1.46854 * 110.99404 * 294.20455 * 7 6 5 9 9 C 1.53035 * 109.52033 * 174.15823 * 8 7 6 10 10 C 1.53117 * 109.27632 * 59.18530 * 9 8 7 11 11 C 1.53006 * 109.57663 * 182.40473 * 10 9 8 12 12 C 1.50700 * 109.47166 * 294.71735 * 11 10 9 13 13 H 1.07995 * 119.99599 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00045 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99879 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99864 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47179 * 90.00216 * 16 14 12 18 18 H 1.48504 * 109.47150 * 209.99930 * 16 14 12 19 19 H 1.48493 * 109.47357 * 329.99832 * 16 14 12 20 20 C 1.53125 * 109.16116 * 302.34057 * 10 9 8 21 21 C 1.46847 * 111.00382 * 169.99981 * 7 6 5 22 22 H 1.09001 * 109.47415 * 245.01112 * 3 2 1 23 23 H 1.09001 * 109.47410 * 125.00888 * 3 2 1 24 24 H 1.09001 * 109.47002 * 299.99701 * 4 3 2 25 25 H 1.08993 * 109.46955 * 60.00139 * 4 3 2 26 26 H 1.09001 * 109.47289 * 299.99953 * 5 4 3 27 27 H 1.09004 * 109.47261 * 59.99697 * 5 4 3 28 28 H 1.09001 * 109.46997 * 299.99574 * 6 5 4 29 29 H 1.08992 * 109.47534 * 59.99520 * 6 5 4 30 30 H 1.08998 * 109.46338 * 294.17854 * 8 7 6 31 31 H 1.09001 * 109.46277 * 54.14866 * 8 7 6 32 32 H 1.08996 * 109.50754 * 299.24032 * 9 8 7 33 33 H 1.09001 * 109.50317 * 179.11892 * 9 8 7 34 34 H 1.08998 * 109.52887 * 62.24447 * 10 9 8 35 35 H 1.09001 * 109.46519 * 54.71104 * 11 10 9 36 36 H 1.08998 * 109.47047 * 174.70991 * 11 10 9 37 37 H 0.96996 * 119.99663 * 180.02562 * 15 14 12 38 38 H 1.09004 * 109.50048 * 297.71551 * 20 10 9 39 39 H 1.08997 * 109.50203 * 177.59887 * 20 10 9 40 40 H 1.08997 * 109.45965 * 305.85403 * 21 7 6 41 41 H 1.08998 * 109.45940 * 65.82643 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.4362 -0.1259 5 6 4.6486 -1.4355 -0.1253 6 6 5.1592 -2.8722 -0.2519 7 7 6.6283 -2.8717 -0.2507 8 6 7.1552 -2.2015 -1.4464 9 6 8.6779 -2.0908 -1.3414 10 6 9.2790 -3.4932 -1.2130 11 6 10.7963 -3.3875 -1.0473 12 6 11.4003 -2.8163 -2.3043 13 1 10.7655 -2.5553 -3.1380 14 6 12.7633 -2.6270 -2.3898 15 7 13.5363 -2.9444 -1.3743 16 14 13.5120 -1.9197 -3.9482 17 1 13.5632 -0.4392 -3.8450 18 1 14.8875 -2.4516 -4.1221 19 1 12.6806 -2.3060 -5.1163 20 6 8.6776 -4.1875 0.0122 21 6 7.1550 -4.2373 -0.1320 22 1 2.9711 0.4349 0.9315 23 1 2.9711 0.5904 -0.8417 24 1 2.7556 -2.0259 0.7158 25 1 2.7555 -1.8704 -1.0574 26 1 5.0121 -0.8457 -0.9668 27 1 5.0114 -1.0013 0.8064 28 1 4.7958 -3.4624 0.5894 29 1 4.7964 -3.3060 -1.1836 30 1 6.8932 -2.7801 -2.3322 31 1 6.7230 -1.2038 -1.5236 32 1 8.9402 -1.5006 -0.4634 33 1 9.0702 -1.6074 -2.2361 34 1 9.0498 -4.0713 -2.1082 35 1 11.0251 -2.7344 -0.2051 36 1 11.2115 -4.3781 -0.8622 37 1 14.4952 -2.8108 -1.4344 38 1 8.9400 -3.6303 0.9116 39 1 9.0698 -5.2019 0.0846 40 1 6.7226 -4.7183 0.7454 41 1 6.8932 -4.8063 -1.0240 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399357564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:09 Heat of formation + Delta-G solvation = -26.659244 kcal Electronic energy + Delta-G solvation = -17817.814420 eV Core-core repulsion = 15116.355563 eV Total energy + Delta-G solvation = -2701.458857 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.07643 -38.03294 -36.70594 -35.23712 -33.94812 -31.69870 -30.79633 -28.87581 -26.03308 -24.23063 -23.94195 -22.27345 -21.47243 -20.37483 -18.39439 -18.25595 -16.85195 -16.68494 -16.42285 -15.76250 -15.30773 -15.04756 -14.83636 -14.69815 -14.56020 -14.02001 -13.99254 -13.64672 -13.29715 -13.14532 -12.96551 -12.87292 -12.53810 -12.48377 -12.22071 -12.03153 -11.95663 -11.83445 -11.81333 -11.55161 -11.34374 -11.13957 -10.75178 -10.63464 -10.48301 -9.10724 -8.14745 -6.24248 1.41687 1.42723 1.53411 1.84330 1.89427 2.43979 3.00079 3.18267 3.26516 4.00371 4.09981 4.13051 4.19266 4.23332 4.42344 4.52036 4.56533 4.62597 4.70905 4.78057 4.84428 4.88852 4.89899 4.95142 5.02718 5.06667 5.16395 5.22613 5.26288 5.42280 5.47272 5.50153 5.52681 5.60965 5.62695 5.85987 5.93558 6.27991 6.32381 6.40071 6.68601 6.92284 7.44084 8.97186 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.036552 B = 0.003386 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.849387 B = 8266.700269 C = 8816.420431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C 0.237 3.763 3 C -0.022 4.022 4 C -0.107 4.107 5 C -0.110 4.110 6 C 0.052 3.948 7 N -0.546 5.546 8 C 0.064 3.936 9 C -0.095 4.095 10 C -0.076 4.076 11 C 0.033 3.967 12 C -0.528 4.528 13 H 0.061 0.939 14 C -0.004 4.004 15 N -0.936 5.936 16 Si 0.961 3.039 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.263 1.263 20 C -0.108 4.108 21 C 0.066 3.934 22 H 0.134 0.866 23 H 0.132 0.868 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.031 0.969 30 H 0.026 0.974 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.044 0.956 35 H -0.012 1.012 36 H -0.017 1.017 37 H 0.261 0.739 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.382 3.329 2.315 18.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.194 5.194 2 C -0.079 4.079 3 C -0.062 4.062 4 C -0.147 4.147 5 C -0.148 4.148 6 C -0.075 4.075 7 N -0.271 5.271 8 C -0.064 4.064 9 C -0.133 4.133 10 C -0.095 4.095 11 C -0.004 4.004 12 C -0.566 4.566 13 H 0.079 0.921 14 C -0.201 4.201 15 N -0.577 5.577 16 Si 0.785 3.215 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.188 1.188 20 C -0.146 4.146 21 C -0.061 4.061 22 H 0.152 0.848 23 H 0.150 0.850 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.006 0.994 36 H 0.001 0.999 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.105 0.895 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -19.764 3.586 2.774 20.277 hybrid contribution 1.186 -0.405 -1.295 1.802 sum -18.578 3.181 1.479 18.906 Atomic orbital electron populations 1.81267 1.15538 1.10930 1.11672 1.30040 0.96023 0.91037 0.90828 1.19617 0.78387 1.00031 1.08165 1.21413 0.95211 0.94756 1.03281 1.21534 0.93818 0.95613 1.03828 1.22195 0.85883 0.98695 1.00771 1.61934 1.08211 1.17406 1.39562 1.22113 0.94334 0.99700 0.90252 1.21427 0.94450 0.96353 1.01095 1.21095 0.95197 0.96434 0.96742 1.19017 0.91880 0.94216 0.95280 1.21653 0.92392 1.41198 1.01317 0.92126 1.25969 0.98146 0.96286 0.99689 1.70109 1.04854 1.49905 1.32841 0.85512 0.77516 0.78714 0.79709 1.19726 1.21115 1.18765 1.21599 0.95140 0.99768 0.98057 1.21995 0.94296 0.89235 1.00619 0.84792 0.84994 0.90931 0.91398 0.90924 0.90208 0.90177 0.95077 0.95621 0.88689 0.93118 0.92690 0.93782 0.99354 0.99877 0.92997 0.92593 0.92478 0.89474 0.95346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -11.57 18.54 20.01 0.37 -11.20 16 2 C 0.24 3.32 15.43 89.44 1.38 4.70 16 3 C -0.02 -0.11 5.70 28.79 0.16 0.06 16 4 C -0.11 -0.75 5.17 30.60 0.16 -0.59 16 5 C -0.11 -1.15 5.14 30.59 0.16 -1.00 16 6 C 0.05 0.83 4.96 86.30 0.43 1.26 16 7 N -0.55 -12.94 4.66 -896.37 -4.17 -17.11 16 8 C 0.06 1.65 5.29 86.32 0.46 2.11 16 9 C -0.10 -3.39 5.15 30.65 0.16 -3.24 16 10 C -0.08 -3.08 2.20 -10.71 -0.02 -3.10 16 11 C 0.03 1.75 4.45 29.85 0.13 1.88 16 12 C -0.53 -29.68 8.45 25.60 0.22 -29.46 16 13 H 0.06 3.26 7.08 -2.91 -0.02 3.24 16 14 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 15 N -0.94 -57.38 13.29 21.45 0.28 -57.09 16 16 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 20 C -0.11 -3.63 5.38 30.65 0.16 -3.46 16 21 C 0.07 1.71 5.46 86.32 0.47 2.18 16 22 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 23 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 24 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.07 0.75 6.43 -2.39 -0.02 0.73 16 27 H 0.08 0.85 8.14 -2.38 -0.02 0.84 16 28 H 0.08 1.16 7.99 -2.39 -0.02 1.14 16 29 H 0.03 0.50 8.12 -2.39 -0.02 0.49 16 30 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.09 2.00 6.21 -2.39 -0.01 1.98 16 32 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 33 H 0.05 2.11 7.06 -2.39 -0.02 2.09 16 34 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 35 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 36 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 37 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 39 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.09 1.89 8.01 -2.39 -0.02 1.87 16 41 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -70.71 330.64 3.81 -66.90 By element: Atomic # 1 Polarization: -0.22 SS G_CDS: 0.97 Total: 0.75 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: 4.33 Total: -28.41 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -3.52 Total: -85.41 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -70.71 3.81 -66.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399357564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.241 kcal (2) G-P(sol) polarization free energy of solvation -70.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds