Wall clock time and date at job start Sun Mar 29 2020 23:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46492 * 109.47083 * 2 1 4 4 C 1.36935 * 120.00438 * 263.78815 * 3 2 1 5 5 H 1.07996 * 120.00693 * 142.61673 * 4 3 2 6 6 C 1.38821 * 119.99443 * 322.61758 * 4 3 2 7 7 N 1.31617 * 119.99484 * 157.39121 * 6 4 3 8 8 Si 1.86796 * 120.00121 * 337.38599 * 6 4 3 9 9 H 1.48500 * 109.47173 * 95.71956 * 8 6 4 10 10 H 1.48504 * 109.47110 * 215.71612 * 8 6 4 11 11 H 1.48498 * 109.47142 * 335.71498 * 8 6 4 12 12 C 1.46509 * 119.99742 * 83.79290 * 3 2 1 13 13 C 1.52994 * 109.47191 * 89.99756 * 12 3 2 14 14 C 1.53002 * 109.46693 * 180.02562 * 13 12 3 15 15 C 1.47201 * 109.47205 * 299.99846 * 14 13 12 16 16 N 6.13778 * 106.60506 * 27.66387 * 2 1 3 17 17 C 1.53005 * 109.47032 * 180.02562 * 14 13 12 18 18 C 1.53002 * 109.47032 * 180.02562 * 17 14 13 19 19 C 1.52992 * 109.47116 * 59.99759 * 18 17 14 20 20 C 1.52994 * 109.47426 * 299.99657 * 19 18 17 21 21 C 1.52995 * 109.47448 * 59.99778 * 14 13 12 22 22 H 1.09003 * 109.47314 * 59.99869 * 1 2 3 23 23 H 1.09010 * 109.47392 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47524 * 299.99560 * 1 2 3 25 25 H 1.09007 * 109.46872 * 239.99845 * 2 1 3 26 26 H 1.08996 * 109.46982 * 120.00705 * 2 1 3 27 27 H 0.96999 * 119.99605 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.46871 * 329.98796 * 12 3 2 29 29 H 1.09002 * 109.46249 * 209.99823 * 12 3 2 30 30 H 1.09000 * 109.47287 * 59.99932 * 13 12 3 31 31 H 1.08992 * 109.47094 * 299.99463 * 13 12 3 32 32 H 1.09005 * 109.46657 * 299.99626 * 17 14 13 33 33 H 1.09000 * 109.47228 * 59.99756 * 17 14 13 34 34 H 1.08998 * 109.46525 * 179.97438 * 18 17 14 35 35 H 1.08992 * 109.46908 * 299.99437 * 18 17 14 36 36 H 1.09005 * 109.47005 * 179.97438 * 19 18 17 37 37 H 1.09005 * 109.47467 * 59.99827 * 19 18 17 38 38 H 1.08994 * 109.47601 * 300.00520 * 20 19 18 39 39 H 1.09000 * 109.47287 * 180.02562 * 20 19 18 40 40 H 1.08998 * 109.47121 * 300.00106 * 21 14 13 41 41 H 1.09007 * 109.46866 * 60.00196 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3675 1.9840 -1.1789 5 1 2.1496 3.0300 -1.3359 6 6 3.0016 1.2504 -2.1723 7 7 2.9450 1.6519 -3.4244 8 14 3.9353 -0.3064 -1.7319 9 1 3.0563 -1.4856 -1.9369 10 1 5.1347 -0.4264 -2.5992 11 1 4.3573 -0.2449 -0.3094 12 6 2.1331 2.1175 1.2614 13 6 3.5250 1.8958 1.8565 14 6 3.6446 2.6642 3.1741 15 6 3.4407 4.1006 2.9247 16 7 3.2840 5.2094 2.7308 17 6 5.0368 2.4431 3.7690 18 6 5.1561 3.2110 5.0869 19 6 4.0962 2.7073 6.0684 20 6 2.7040 2.9286 5.4737 21 6 2.5842 2.1616 4.1558 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.3878 1.1391 -4.1186 28 1 1.3775 1.7598 1.9609 29 1 1.9822 3.1810 1.0761 30 1 4.2805 2.2535 1.1569 31 1 3.6758 0.8323 2.0417 32 1 5.1881 1.3795 3.9536 33 1 5.7919 2.8015 3.0694 34 1 6.1478 3.0531 5.5108 35 1 5.0046 4.2745 4.9026 36 1 4.1815 3.2542 7.0075 37 1 4.2477 1.6437 6.2527 38 1 2.5524 3.9920 5.2894 39 1 1.9489 2.5701 6.1732 40 1 1.5926 2.3195 3.7318 41 1 2.7352 1.0980 4.3405 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411213703.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:44 Heat of formation + Delta-G solvation = 19.746741 kcal Electronic energy + Delta-G solvation = -19181.668981 eV Core-core repulsion = 16482.222439 eV Total energy + Delta-G solvation = -2699.446543 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.75873 -36.36881 -35.50482 -33.18980 -31.67100 -30.97646 -29.81084 -27.43059 -24.36596 -23.14875 -22.72952 -22.21996 -20.73384 -19.76170 -16.75085 -16.35319 -15.54168 -15.25094 -14.79368 -14.48134 -14.08488 -13.69044 -13.40599 -13.20765 -13.10862 -12.88177 -12.45741 -12.23003 -12.08361 -11.99639 -11.77157 -11.59310 -11.31657 -11.28971 -11.12635 -11.09445 -10.78530 -10.64163 -10.43782 -10.20075 -10.03753 -9.85337 -9.69962 -9.46442 -8.51182 -6.83140 -5.97962 -3.38857 3.08052 3.12905 3.31202 3.46234 3.50246 4.08999 4.52518 4.64191 4.66730 4.73780 4.95666 5.08277 5.11312 5.29068 5.37957 5.40612 5.50212 5.56520 5.70722 5.81088 5.89944 5.93179 5.95621 6.00642 6.04502 6.07545 6.16813 6.20595 6.26052 6.28681 6.35119 6.39608 6.51572 6.70048 6.80726 6.89487 7.08030 7.89883 8.07725 8.40564 9.01033 9.72924 10.13490 11.17969 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.026131 B = 0.006456 C = 0.006244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.257675 B = 4335.859817 C = 4483.338447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 N -0.604 5.604 4 C -0.267 4.267 5 H 0.076 0.924 6 C 0.035 3.965 7 N -0.901 5.901 8 Si 0.877 3.123 9 H -0.287 1.287 10 H -0.303 1.303 11 H -0.266 1.266 12 C 0.148 3.852 13 C -0.132 4.132 14 C 0.040 3.960 15 C 0.229 3.771 16 N -0.447 5.447 17 C -0.107 4.107 18 C -0.124 4.124 19 C -0.118 4.118 20 C -0.125 4.125 21 C -0.108 4.108 22 H 0.058 0.942 23 H 0.038 0.962 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.034 0.966 27 H 0.262 0.738 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.794 -3.264 18.288 18.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.005 3.995 3 N -0.326 5.326 4 C -0.395 4.395 5 H 0.094 0.906 6 C -0.166 4.166 7 N -0.542 5.542 8 Si 0.707 3.293 9 H -0.215 1.215 10 H -0.231 1.231 11 H -0.190 1.190 12 C 0.022 3.978 13 C -0.173 4.173 14 C 0.035 3.965 15 C -0.088 4.088 16 N -0.122 5.122 17 C -0.146 4.146 18 C -0.162 4.162 19 C -0.156 4.156 20 C -0.162 4.162 21 C -0.147 4.147 22 H 0.077 0.923 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.594 -1.578 17.795 17.936 hybrid contribution 0.690 -1.274 0.026 1.449 sum 2.284 -2.851 17.821 18.191 Atomic orbital electron populations 1.22255 0.99118 0.99375 1.01608 1.21128 0.92533 0.86726 0.99066 1.44150 1.74491 1.11245 1.02745 1.18783 1.33296 0.97067 0.90373 0.90610 1.25493 0.97806 0.98014 0.95263 1.69884 1.44201 1.40708 0.99380 0.86923 0.79916 0.83794 0.78693 1.21536 1.23085 1.19013 1.20997 0.92667 0.96540 0.87646 1.22431 1.02840 0.99435 0.92570 1.18482 0.97142 0.82738 0.98099 1.29002 0.92883 0.94701 0.92257 1.81177 1.08723 1.12997 1.09344 1.21645 0.94602 1.01712 0.96613 1.21605 0.99057 1.00022 0.95519 1.21534 0.94654 1.01369 0.98002 1.21603 0.97173 1.00587 0.96871 1.21686 0.98524 1.00625 0.93854 0.92329 0.94292 0.93868 0.92540 0.94739 0.92768 0.93682 0.93424 0.90623 0.90797 0.89919 0.91003 0.91589 0.92244 0.92218 0.91592 0.92260 0.91529 0.90477 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 10.23 37.16 0.38 -2.65 16 2 C 0.13 2.73 5.01 -4.05 -0.02 2.71 16 3 N -0.60 -13.86 2.08 -173.24 -0.36 -14.22 16 4 C -0.27 -7.39 9.91 -15.06 -0.15 -7.54 16 5 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 6 C 0.03 0.99 5.26 -17.43 -0.09 0.90 16 7 N -0.90 -27.54 13.97 55.49 0.78 -26.77 16 8 Si 0.88 21.69 25.05 -169.99 -4.26 17.43 16 9 H -0.29 -6.95 6.69 56.52 0.38 -6.57 16 10 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 C 0.15 2.79 5.08 -4.04 -0.02 2.77 16 13 C -0.13 -2.14 4.57 -26.73 -0.12 -2.26 16 14 C 0.04 0.52 0.51 -157.29 -0.08 0.44 16 15 C 0.23 3.64 10.10 -20.74 -0.21 3.43 16 16 N -0.45 -8.21 18.54 42.17 0.78 -7.43 16 17 C -0.11 -1.16 4.71 -26.73 -0.13 -1.28 16 18 C -0.12 -1.20 5.70 -26.73 -0.15 -1.36 16 19 C -0.12 -1.01 5.92 -26.74 -0.16 -1.17 16 20 C -0.12 -1.20 5.70 -26.76 -0.15 -1.35 16 21 C -0.11 -1.16 4.35 -26.76 -0.12 -1.28 16 22 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 23 H 0.04 0.62 8.14 -51.92 -0.42 0.19 16 24 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 25 H 0.06 1.31 3.60 -51.93 -0.19 1.13 16 26 H 0.03 0.63 8.12 -51.93 -0.42 0.21 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 28 H 0.04 0.74 6.33 -51.93 -0.33 0.41 16 29 H 0.05 0.99 7.12 -51.93 -0.37 0.62 16 30 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.67 7.23 -51.93 -0.38 0.29 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.66 7.23 -51.93 -0.38 0.29 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.87 6.43 -51.93 -0.33 0.54 16 41 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 LS Contribution 317.71 15.07 4.79 4.79 Total: -1.00 -31.06 317.71 -6.34 -37.40 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -7.05 Total: -2.57 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -1.02 Total: -8.63 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 1.20 Total: -48.42 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.26 Total: 17.43 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.06 -6.34 -37.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411213703.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.147 kcal (2) G-P(sol) polarization free energy of solvation -31.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds