Wall clock time and date at job start Sun Mar 29 2020 23:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46492 * 109.47083 * 2 1 4 4 C 1.36935 * 120.00438 * 263.78815 * 3 2 1 5 5 H 1.07996 * 120.00693 * 142.61673 * 4 3 2 6 6 C 1.38821 * 119.99443 * 322.61758 * 4 3 2 7 7 N 1.31617 * 119.99484 * 157.39121 * 6 4 3 8 8 Si 1.86796 * 120.00121 * 337.38599 * 6 4 3 9 9 H 1.48500 * 109.47173 * 95.71956 * 8 6 4 10 10 H 1.48504 * 109.47110 * 215.71612 * 8 6 4 11 11 H 1.48498 * 109.47142 * 335.71498 * 8 6 4 12 12 C 1.46509 * 119.99742 * 83.79290 * 3 2 1 13 13 C 1.52994 * 109.47191 * 89.99756 * 12 3 2 14 14 C 1.53002 * 109.46693 * 180.02562 * 13 12 3 15 15 C 1.47201 * 109.47205 * 299.99846 * 14 13 12 16 16 N 6.13778 * 106.60506 * 27.66387 * 2 1 3 17 17 C 1.53005 * 109.47032 * 180.02562 * 14 13 12 18 18 C 1.53002 * 109.47032 * 180.02562 * 17 14 13 19 19 C 1.52992 * 109.47116 * 59.99759 * 18 17 14 20 20 C 1.52994 * 109.47426 * 299.99657 * 19 18 17 21 21 C 1.52995 * 109.47448 * 59.99778 * 14 13 12 22 22 H 1.09003 * 109.47314 * 59.99869 * 1 2 3 23 23 H 1.09010 * 109.47392 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47524 * 299.99560 * 1 2 3 25 25 H 1.09007 * 109.46872 * 239.99845 * 2 1 3 26 26 H 1.08996 * 109.46982 * 120.00705 * 2 1 3 27 27 H 0.96999 * 119.99605 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.46871 * 329.98796 * 12 3 2 29 29 H 1.09002 * 109.46249 * 209.99823 * 12 3 2 30 30 H 1.09000 * 109.47287 * 59.99932 * 13 12 3 31 31 H 1.08992 * 109.47094 * 299.99463 * 13 12 3 32 32 H 1.09005 * 109.46657 * 299.99626 * 17 14 13 33 33 H 1.09000 * 109.47228 * 59.99756 * 17 14 13 34 34 H 1.08998 * 109.46525 * 179.97438 * 18 17 14 35 35 H 1.08992 * 109.46908 * 299.99437 * 18 17 14 36 36 H 1.09005 * 109.47005 * 179.97438 * 19 18 17 37 37 H 1.09005 * 109.47467 * 59.99827 * 19 18 17 38 38 H 1.08994 * 109.47601 * 300.00520 * 20 19 18 39 39 H 1.09000 * 109.47287 * 180.02562 * 20 19 18 40 40 H 1.08998 * 109.47121 * 300.00106 * 21 14 13 41 41 H 1.09007 * 109.46866 * 60.00196 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3675 1.9840 -1.1789 5 1 2.1496 3.0300 -1.3359 6 6 3.0016 1.2504 -2.1723 7 7 2.9450 1.6519 -3.4244 8 14 3.9353 -0.3064 -1.7319 9 1 3.0563 -1.4856 -1.9369 10 1 5.1347 -0.4264 -2.5992 11 1 4.3573 -0.2449 -0.3094 12 6 2.1331 2.1175 1.2614 13 6 3.5250 1.8958 1.8565 14 6 3.6446 2.6642 3.1741 15 6 3.4407 4.1006 2.9247 16 7 3.2840 5.2094 2.7308 17 6 5.0368 2.4431 3.7690 18 6 5.1561 3.2110 5.0869 19 6 4.0962 2.7073 6.0684 20 6 2.7040 2.9286 5.4737 21 6 2.5842 2.1616 4.1558 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.3878 1.1391 -4.1186 28 1 1.3775 1.7598 1.9609 29 1 1.9822 3.1810 1.0761 30 1 4.2805 2.2535 1.1569 31 1 3.6758 0.8323 2.0417 32 1 5.1881 1.3795 3.9536 33 1 5.7919 2.8015 3.0694 34 1 6.1478 3.0531 5.5108 35 1 5.0046 4.2745 4.9026 36 1 4.1815 3.2542 7.0075 37 1 4.2477 1.6437 6.2527 38 1 2.5524 3.9920 5.2894 39 1 1.9489 2.5701 6.1732 40 1 1.5926 2.3195 3.7318 41 1 2.7352 1.0980 4.3405 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411213703.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:44 Heat of formation + Delta-G solvation = 1.473395 kcal Electronic energy + Delta-G solvation = -19182.461373 eV Core-core repulsion = 16482.222439 eV Total energy + Delta-G solvation = -2700.238934 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.77492 -38.03394 -36.75515 -34.50850 -33.62938 -31.77921 -31.26495 -28.93723 -25.89822 -24.64606 -23.62370 -23.51758 -21.87804 -21.08057 -18.69575 -17.48217 -17.10896 -16.73284 -15.86625 -15.60251 -15.39759 -15.08546 -14.86794 -14.57097 -14.40149 -14.09138 -13.96315 -13.60956 -13.46347 -13.29318 -12.99934 -12.84761 -12.63286 -12.49497 -12.45896 -12.40883 -12.15403 -11.96269 -11.67958 -11.57372 -11.37593 -11.30227 -10.94981 -10.84420 -10.59281 -8.73537 -8.17477 -5.55434 1.35521 1.45894 1.58363 1.82631 1.84887 2.46426 2.97007 3.07676 3.33960 3.77140 3.85936 3.96492 4.19497 4.27791 4.34915 4.43310 4.52183 4.54800 4.62678 4.66916 4.74463 4.80828 4.84648 4.89417 4.95196 5.05481 5.16297 5.17702 5.22501 5.24484 5.28901 5.32031 5.42745 5.43571 5.50952 5.55905 5.57363 5.97493 6.17986 6.64604 7.03994 7.68428 8.07731 9.03283 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.026131 B = 0.006456 C = 0.006244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.257675 B = 4335.859817 C = 4483.338447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.122 3.878 3 N -0.615 5.615 4 C -0.257 4.257 5 H 0.021 0.979 6 C -0.028 4.028 7 N -0.957 5.957 8 Si 0.950 3.050 9 H -0.274 1.274 10 H -0.315 1.315 11 H -0.235 1.235 12 C 0.147 3.853 13 C -0.122 4.122 14 C 0.044 3.956 15 C 0.245 3.755 16 N -0.503 5.503 17 C -0.106 4.106 18 C -0.123 4.123 19 C -0.114 4.114 20 C -0.124 4.124 21 C -0.107 4.107 22 H 0.022 0.978 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.033 0.967 26 H 0.077 0.923 27 H 0.261 0.739 28 H 0.081 0.919 29 H 0.013 0.987 30 H 0.043 0.957 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.033 0.967 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.032 0.968 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.223 -6.735 21.918 23.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.003 4.003 3 N -0.339 5.339 4 C -0.387 4.387 5 H 0.039 0.961 6 C -0.223 4.223 7 N -0.601 5.601 8 Si 0.777 3.223 9 H -0.201 1.201 10 H -0.244 1.244 11 H -0.158 1.158 12 C 0.022 3.978 13 C -0.163 4.163 14 C 0.039 3.961 15 C -0.072 4.072 16 N -0.179 5.179 17 C -0.144 4.144 18 C -0.161 4.161 19 C -0.151 4.151 20 C -0.161 4.161 21 C -0.145 4.145 22 H 0.042 0.958 23 H 0.089 0.911 24 H 0.080 0.920 25 H 0.051 0.949 26 H 0.096 0.904 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.032 0.968 30 H 0.062 0.938 31 H 0.119 0.881 32 H 0.131 0.869 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.051 0.949 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.051 0.949 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.007 -5.053 21.486 22.163 hybrid contribution 0.453 -0.082 -1.099 1.191 sum 2.460 -5.135 20.387 21.168 Atomic orbital electron populations 1.22163 0.97485 1.01220 1.00802 1.21329 0.93957 0.85125 0.99848 1.44229 1.74948 1.12326 1.02365 1.18543 1.32517 0.95088 0.92523 0.96126 1.26217 0.98874 1.02535 0.94721 1.70046 1.46053 1.43279 1.00766 0.85759 0.77575 0.79391 0.79602 1.20057 1.24425 1.15768 1.21093 0.95641 0.94351 0.86751 1.22234 0.99548 1.01247 0.93238 1.18721 0.99947 0.80027 0.97358 1.29798 0.91252 0.95436 0.90708 1.81171 1.10713 1.14976 1.11052 1.21702 0.92314 1.03708 0.96683 1.21605 1.00730 0.98321 0.95434 1.21541 0.93107 1.02862 0.97638 1.21602 0.98743 0.98908 0.96854 1.21757 0.96881 1.02486 0.93346 0.95833 0.91105 0.92005 0.94893 0.90446 0.92990 0.90105 0.96840 0.93833 0.88126 0.86857 0.92232 0.89765 0.94859 0.91486 0.89218 0.94879 0.89494 0.91259 0.86633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.35 10.23 71.98 0.74 -4.61 16 2 C 0.12 4.68 5.01 86.38 0.43 5.11 16 3 N -0.62 -27.70 2.08 -702.01 -1.46 -29.16 16 4 C -0.26 -14.77 9.91 84.04 0.83 -13.93 16 5 H 0.02 1.39 8.06 -2.91 -0.02 1.37 16 6 C -0.03 -1.63 5.26 84.86 0.45 -1.19 16 7 N -0.96 -61.22 13.97 21.65 0.30 -60.92 16 8 Si 0.95 44.64 25.05 68.60 1.72 46.36 16 9 H -0.27 -12.18 6.69 99.48 0.67 -11.52 16 10 H -0.32 -15.34 7.11 99.48 0.71 -14.64 16 11 H -0.23 -9.74 7.11 99.48 0.71 -9.04 16 12 C 0.15 5.35 5.08 86.38 0.44 5.79 16 13 C -0.12 -3.66 4.57 30.59 0.14 -3.52 16 14 C 0.04 1.03 0.51 -53.99 -0.03 1.01 16 15 C 0.24 7.86 10.10 89.44 0.90 8.76 16 16 N -0.50 -19.33 18.54 20.01 0.37 -18.96 16 17 C -0.11 -1.94 4.71 30.60 0.14 -1.80 16 18 C -0.12 -2.03 5.70 30.59 0.17 -1.86 16 19 C -0.11 -1.48 5.92 30.59 0.18 -1.30 16 20 C -0.12 -1.95 5.70 30.58 0.17 -1.78 16 21 C -0.11 -1.84 4.35 30.58 0.13 -1.71 16 22 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 24 H 0.06 1.85 8.12 -2.39 -0.02 1.83 16 25 H 0.03 1.43 3.60 -2.38 -0.01 1.43 16 26 H 0.08 2.35 8.12 -2.39 -0.02 2.33 16 27 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 28 H 0.08 2.37 6.33 -2.39 -0.02 2.36 16 29 H 0.01 0.57 7.12 -2.39 -0.02 0.55 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.03 0.72 7.23 -2.39 -0.02 0.70 16 36 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.03 0.69 7.23 -2.39 -0.02 0.68 16 39 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 1.32 6.43 -2.39 -0.02 1.30 16 41 H 0.12 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -73.31 317.71 6.58 -66.73 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 0.94 Total: 6.98 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: 4.71 Total: -11.03 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -0.79 Total: -109.03 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.72 Total: 46.36 kcal Total: -73.31 6.58 -66.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411213703.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.199 kcal (2) G-P(sol) polarization free energy of solvation -73.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds