Wall clock time and date at job start Sun Mar 29 2020 23:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39706 * 120.12327 * 178.58826 * 3 2 1 5 5 C 1.37830 * 119.87407 * 179.97438 * 4 3 2 6 6 C 1.38661 * 120.12463 * 0.02562 * 5 4 3 7 7 F 1.35095 * 119.87595 * 179.97438 * 6 5 4 8 8 C 1.38622 * 120.24949 * 359.72097 * 6 5 4 9 9 C 1.37868 * 120.12412 * 0.55517 * 8 6 5 10 10 C 1.50703 * 120.06184 * 179.72302 * 9 8 6 11 11 S 1.81401 * 109.47002 * 269.72429 * 10 9 8 12 12 C 1.81397 * 102.99785 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47105 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00088 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00111 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00216 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99927 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47243 * 89.99728 * 17 15 13 19 19 H 1.48505 * 109.47175 * 209.99641 * 17 15 13 20 20 H 1.48496 * 109.47465 * 329.99643 * 17 15 13 21 21 H 1.08005 * 120.06895 * 359.97438 * 4 3 2 22 22 H 1.08000 * 119.93837 * 180.02562 * 5 4 3 23 23 H 1.08001 * 119.93615 * 180.28202 * 8 6 5 24 24 H 1.09002 * 109.47152 * 149.72529 * 10 9 8 25 25 H 1.09001 * 109.46980 * 29.72630 * 10 9 8 26 26 H 1.09004 * 109.47371 * 299.99984 * 12 11 10 27 27 H 1.09000 * 109.47527 * 60.00229 * 12 11 10 28 28 H 0.96993 * 120.00403 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 1.2090 -0.0298 5 6 4.6469 1.2036 -0.0291 6 6 5.3381 0.0019 0.0005 7 9 6.6891 0.0025 0.0005 8 6 4.6482 -1.1999 0.0354 9 6 3.2695 -1.2067 0.0293 10 6 2.5209 -2.5142 0.0610 11 16 2.2212 -3.0806 -1.6360 12 6 1.3265 -4.6399 -1.3937 13 6 1.0001 -5.2454 -2.7346 14 1 1.3005 -4.7423 -3.6418 15 6 0.3171 -6.4411 -2.8032 16 7 -0.0492 -7.0536 -1.6985 17 14 -0.0881 -7.1912 -4.4653 18 1 1.0198 -8.0852 -4.8883 19 1 -1.3448 -7.9756 -4.3613 20 1 -0.2614 -6.1094 -5.4677 21 1 2.7313 2.1456 -0.0533 22 1 5.1895 2.1371 -0.0517 23 1 5.1917 -2.1328 0.0630 24 1 1.5678 -2.3750 0.5712 25 1 3.1126 -3.2589 0.5935 26 1 1.9485 -5.3312 -0.8250 27 1 0.4032 -4.4479 -0.8470 28 1 -0.5294 -7.8949 -1.7468 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413015182.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:00 Heat of formation + Delta-G solvation = -5.573084 kcal Electronic energy + Delta-G solvation = -14620.200417 eV Core-core repulsion = 11869.563639 eV Total energy + Delta-G solvation = -2750.636778 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.048 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.14182 -39.65924 -36.26982 -33.19496 -33.06257 -31.13656 -28.63200 -27.49008 -23.84413 -23.22585 -22.08707 -19.00355 -17.52139 -16.88521 -16.49748 -15.88416 -15.39977 -14.79144 -14.64919 -14.18211 -13.96617 -13.89119 -13.53855 -12.98318 -12.79286 -12.54674 -12.44569 -12.30449 -11.94069 -11.87475 -11.32501 -10.90290 -10.75756 -10.26951 -9.66316 -9.18528 -8.99743 -8.77383 -8.65080 -6.81784 -6.23160 -4.27904 0.43020 0.86464 2.44224 2.74670 2.86753 3.24406 3.30152 3.35457 3.68173 3.72411 3.84246 3.93608 4.32646 4.39144 4.47190 4.80250 5.06236 5.14193 5.26068 5.39918 5.57785 5.77465 5.80248 5.83466 6.12333 6.49454 7.02051 7.04469 7.55366 7.70899 7.95326 8.73701 9.35549 10.88101 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.030195 B = 0.004854 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.082764 B = 5767.196270 C = 6303.972201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C 0.252 3.748 3 C -0.028 4.028 4 C -0.041 4.041 5 C -0.161 4.161 6 C 0.129 3.871 7 F -0.133 7.133 8 C -0.141 4.141 9 C 0.023 3.977 10 C -0.072 4.072 11 S -0.282 6.282 12 C 0.089 3.911 13 C -0.514 4.514 14 H 0.068 0.932 15 C 0.066 3.934 16 N -0.892 5.892 17 Si 0.907 3.093 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.271 1.271 21 H 0.144 0.856 22 H 0.145 0.855 23 H 0.149 0.851 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.038 0.962 27 H 0.036 0.964 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.520 14.577 5.771 18.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.077 5.077 2 C -0.063 4.063 3 C -0.033 4.033 4 C -0.062 4.062 5 C -0.180 4.180 6 C 0.109 3.891 7 F -0.112 7.112 8 C -0.161 4.161 9 C 0.019 3.981 10 C -0.219 4.219 11 S -0.053 6.053 12 C -0.057 4.057 13 C -0.553 4.553 14 H 0.086 0.914 15 C -0.138 4.138 16 N -0.530 5.530 17 Si 0.734 3.266 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.195 1.195 21 H 0.161 0.839 22 H 0.163 0.837 23 H 0.167 0.833 24 H 0.104 0.896 25 H 0.115 0.885 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.972 14.861 4.895 18.037 hybrid contribution 0.067 -1.182 0.309 1.224 sum 9.039 13.679 5.204 17.202 Atomic orbital electron populations 1.81256 1.11819 1.06697 1.07892 1.25366 0.92421 0.94221 0.94325 1.15902 0.84989 0.93944 1.08459 1.20952 0.93130 0.96877 0.95217 1.21006 0.94282 0.97455 1.05264 1.17843 0.76961 0.94369 0.99910 1.91529 1.28796 1.97403 1.93440 1.20964 0.93432 0.98051 1.03676 1.19257 0.92530 0.92928 0.93381 1.22355 1.02471 0.95836 1.01220 1.86909 1.77287 1.34517 1.06615 1.21119 0.96030 0.87214 1.01357 1.20644 1.37468 1.06103 0.91086 0.91417 1.24961 0.95054 0.96355 0.97419 1.69946 1.38726 1.17199 1.27137 0.86336 0.77924 0.79215 0.83114 1.20264 1.20933 1.19520 0.83868 0.83741 0.83292 0.89551 0.88536 0.94353 0.94539 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -6.94 18.54 41.84 0.78 -6.16 15 2 C 0.25 3.74 13.80 -22.47 -0.31 3.43 15 3 C -0.03 -0.34 5.73 -106.89 -0.61 -0.95 15 4 C -0.04 -0.36 9.75 -39.18 -0.38 -0.75 15 5 C -0.16 -1.31 10.01 -39.57 -0.40 -1.71 15 6 C 0.13 1.30 7.31 -39.28 -0.29 1.01 15 7 F -0.13 -1.39 17.26 2.25 0.04 -1.35 15 8 C -0.14 -1.58 9.66 -39.58 -0.38 -1.97 15 9 C 0.02 0.30 5.17 -104.22 -0.54 -0.24 15 10 C -0.07 -1.14 5.67 36.01 0.20 -0.94 15 11 S -0.28 -5.95 21.64 -107.50 -2.33 -8.28 15 12 C 0.09 2.30 5.70 36.01 0.21 2.51 15 13 C -0.51 -14.46 9.13 -34.44 -0.31 -14.78 15 14 H 0.07 1.91 7.71 -52.49 -0.40 1.50 15 15 C 0.07 1.86 5.46 -17.82 -0.10 1.76 15 16 N -0.89 -25.94 13.29 55.43 0.74 -25.20 15 17 Si 0.91 21.43 29.54 -169.99 -5.02 16.41 15 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 19 H -0.28 -6.60 7.11 56.52 0.40 -6.19 15 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 21 H 0.14 0.89 8.06 -52.48 -0.42 0.47 15 22 H 0.14 0.80 8.06 -52.49 -0.42 0.37 15 23 H 0.15 1.55 8.06 -52.49 -0.42 1.12 15 24 H 0.09 1.42 7.09 -51.92 -0.37 1.05 15 25 H 0.10 1.39 8.08 -51.92 -0.42 0.97 15 26 H 0.04 1.01 8.14 -51.92 -0.42 0.59 15 27 H 0.04 0.99 8.14 -51.92 -0.42 0.57 15 28 H 0.27 7.27 8.31 -40.82 -0.34 6.93 15 LS Contribution 280.62 15.07 4.23 4.23 Total: -1.00 -30.61 280.62 -6.92 -37.53 By element: Atomic # 1 Polarization: -2.11 SS G_CDS: -2.44 Total: -4.55 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -2.91 Total: -12.62 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 1.51 Total: -31.37 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -5.95 SS G_CDS: -2.33 Total: -8.28 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.61 -6.92 -37.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413015182.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.959 kcal (2) G-P(sol) polarization free energy of solvation -30.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds