Wall clock time and date at job start Sun Mar 29 2020 23:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39706 * 120.12327 * 178.58826 * 3 2 1 5 5 C 1.37830 * 119.87407 * 179.97438 * 4 3 2 6 6 C 1.38661 * 120.12463 * 0.02562 * 5 4 3 7 7 F 1.35095 * 119.87595 * 179.97438 * 6 5 4 8 8 C 1.38622 * 120.24949 * 359.72097 * 6 5 4 9 9 C 1.37868 * 120.12412 * 0.55517 * 8 6 5 10 10 C 1.50703 * 120.06184 * 179.72302 * 9 8 6 11 11 S 1.81401 * 109.47002 * 269.72429 * 10 9 8 12 12 C 1.81397 * 102.99785 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47105 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00088 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00111 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00216 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99927 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47243 * 89.99728 * 17 15 13 19 19 H 1.48505 * 109.47175 * 209.99641 * 17 15 13 20 20 H 1.48496 * 109.47465 * 329.99643 * 17 15 13 21 21 H 1.08005 * 120.06895 * 359.97438 * 4 3 2 22 22 H 1.08000 * 119.93837 * 180.02562 * 5 4 3 23 23 H 1.08001 * 119.93615 * 180.28202 * 8 6 5 24 24 H 1.09002 * 109.47152 * 149.72529 * 10 9 8 25 25 H 1.09001 * 109.46980 * 29.72630 * 10 9 8 26 26 H 1.09004 * 109.47371 * 299.99984 * 12 11 10 27 27 H 1.09000 * 109.47527 * 60.00229 * 12 11 10 28 28 H 0.96993 * 120.00403 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 1.2090 -0.0298 5 6 4.6469 1.2036 -0.0291 6 6 5.3381 0.0019 0.0005 7 9 6.6891 0.0025 0.0005 8 6 4.6482 -1.1999 0.0354 9 6 3.2695 -1.2067 0.0293 10 6 2.5209 -2.5142 0.0610 11 16 2.2212 -3.0806 -1.6360 12 6 1.3265 -4.6399 -1.3937 13 6 1.0001 -5.2454 -2.7346 14 1 1.3005 -4.7423 -3.6418 15 6 0.3171 -6.4411 -2.8032 16 7 -0.0492 -7.0536 -1.6985 17 14 -0.0881 -7.1912 -4.4653 18 1 1.0198 -8.0852 -4.8883 19 1 -1.3448 -7.9756 -4.3613 20 1 -0.2614 -6.1094 -5.4677 21 1 2.7313 2.1456 -0.0533 22 1 5.1895 2.1371 -0.0517 23 1 5.1917 -2.1328 0.0630 24 1 1.5678 -2.3750 0.5712 25 1 3.1126 -3.2589 0.5935 26 1 1.9485 -5.3312 -0.8250 27 1 0.4032 -4.4479 -0.8470 28 1 -0.5294 -7.8949 -1.7468 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413015182.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:00 Heat of formation + Delta-G solvation = -22.146563 kcal Electronic energy + Delta-G solvation = -14620.919097 eV Core-core repulsion = 11869.563639 eV Total energy + Delta-G solvation = -2751.355458 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.048 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.94781 -40.56887 -37.45385 -35.33511 -34.03581 -32.03361 -30.74210 -28.60807 -25.28239 -24.70308 -23.10858 -19.95237 -18.79399 -18.24041 -17.77384 -17.17499 -16.71319 -16.39239 -15.65800 -15.27561 -15.22212 -14.82569 -14.61460 -14.60903 -14.54555 -14.21023 -13.80082 -13.55401 -13.19653 -13.07520 -12.75520 -12.60808 -12.19835 -12.08168 -11.61424 -10.86424 -10.78274 -10.03814 -9.74024 -8.55620 -8.37253 -6.51005 -0.51172 -0.00136 1.06718 1.37667 1.38945 1.51235 1.59706 1.79366 1.90929 2.33618 2.72355 2.82020 2.97450 3.04441 3.44080 3.60204 4.04055 4.07562 4.25391 4.41975 4.60427 4.84114 4.87650 4.88993 5.01493 5.03286 5.22651 5.52578 5.70229 5.83363 6.42227 6.56388 7.17428 8.74770 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.030195 B = 0.004854 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.082764 B = 5767.196270 C = 6303.972201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.272 3.728 3 C -0.042 4.042 4 C -0.024 4.024 5 C -0.137 4.137 6 C 0.130 3.870 7 F -0.133 7.133 8 C -0.141 4.141 9 C 0.004 3.996 10 C -0.056 4.056 11 S -0.290 6.290 12 C 0.090 3.910 13 C -0.538 4.538 14 H 0.063 0.937 15 C 0.015 3.985 16 N -0.925 5.925 17 Si 0.977 3.023 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.267 1.267 21 H 0.177 0.823 22 H 0.184 0.816 23 H 0.153 0.847 24 H 0.076 0.924 25 H 0.110 0.890 26 H 0.022 0.978 27 H 0.007 0.993 28 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.262 16.492 5.303 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.042 4.042 3 C -0.047 4.047 4 C -0.044 4.044 5 C -0.156 4.156 6 C 0.110 3.890 7 F -0.112 7.112 8 C -0.162 4.162 9 C 0.000 4.000 10 C -0.204 4.204 11 S -0.061 6.061 12 C -0.057 4.057 13 C -0.577 4.577 14 H 0.081 0.919 15 C -0.186 4.186 16 N -0.564 5.564 17 Si 0.800 3.200 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.191 1.191 21 H 0.194 0.806 22 H 0.201 0.799 23 H 0.171 0.829 24 H 0.094 0.906 25 H 0.128 0.872 26 H 0.040 0.960 27 H 0.026 0.974 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.721 16.777 4.426 20.396 hybrid contribution -0.326 -1.630 0.561 1.755 sum 10.395 15.147 4.988 19.036 Atomic orbital electron populations 1.81267 1.13480 1.08398 1.10097 1.25837 0.92950 0.92693 0.92764 1.16080 0.83555 0.95122 1.09977 1.21301 0.93430 0.96652 0.92990 1.21417 0.93879 0.98178 1.02095 1.17946 0.76964 0.94561 0.99505 1.91541 1.28841 1.97401 1.93372 1.20986 0.92630 0.99199 1.03366 1.18962 0.93069 0.91500 0.96438 1.22340 1.02839 0.98040 0.97146 1.86628 1.76156 1.31541 1.11750 1.20775 0.95164 0.89815 0.99978 1.20979 1.38064 1.06864 0.91747 0.91916 1.25926 0.94563 0.96712 1.01427 1.70053 1.39215 1.17688 1.29416 0.85272 0.78146 0.78407 0.78219 1.18987 1.20102 1.19093 0.80577 0.79906 0.82891 0.90575 0.87177 0.96017 0.97429 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -16.04 18.54 19.00 0.35 -15.69 15 2 C 0.27 7.94 13.80 88.33 1.22 9.16 15 3 C -0.04 -0.94 5.73 -21.33 -0.12 -1.06 15 4 C -0.02 -0.32 9.75 22.53 0.22 -0.10 15 5 C -0.14 -1.55 10.01 22.27 0.22 -1.33 15 6 C 0.13 2.15 7.31 22.46 0.16 2.31 15 7 F -0.13 -2.32 17.26 44.97 0.78 -1.54 15 8 C -0.14 -2.87 9.66 22.27 0.22 -2.66 15 9 C 0.00 0.11 5.17 -19.61 -0.10 0.01 15 10 C -0.06 -1.81 5.67 71.24 0.40 -1.41 15 11 S -0.29 -12.52 21.64 -56.49 -1.22 -13.74 15 12 C 0.09 4.86 5.70 71.24 0.41 5.26 15 13 C -0.54 -31.20 9.13 25.60 0.23 -30.96 15 14 H 0.06 3.61 7.71 -2.91 -0.02 3.59 15 15 C 0.01 0.83 5.46 84.65 0.46 1.30 15 16 N -0.93 -55.11 13.29 21.45 0.28 -54.82 15 17 Si 0.98 44.23 29.54 68.60 2.03 46.25 15 18 H -0.26 -11.43 7.11 99.48 0.71 -10.72 15 19 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 21 H 0.18 1.28 8.06 -2.91 -0.02 1.26 15 22 H 0.18 0.81 8.06 -2.91 -0.02 0.78 15 23 H 0.15 2.93 8.06 -2.91 -0.02 2.91 15 24 H 0.08 2.59 7.09 -2.39 -0.02 2.57 15 25 H 0.11 3.19 8.08 -2.39 -0.02 3.17 15 26 H 0.02 1.20 8.14 -2.39 -0.02 1.18 15 27 H 0.01 0.43 8.14 -2.39 -0.02 0.41 15 28 H 0.27 15.02 8.31 -92.71 -0.77 14.25 15 Total: -1.00 -68.80 280.62 6.72 -62.08 By element: Atomic # 1 Polarization: -4.23 SS G_CDS: 1.18 Total: -3.05 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 3.32 Total: -19.49 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: 0.64 Total: -70.51 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.78 Total: -1.54 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -12.52 SS G_CDS: -1.22 Total: -13.74 kcal Total: -68.80 6.72 -62.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413015182.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.934 kcal (2) G-P(sol) polarization free energy of solvation -68.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds