Wall clock time and date at job start Sun Mar 29 2020 23:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39688 * 120.16618 * 221.85992 * 3 2 1 5 5 C 1.37872 * 119.87072 * 180.30026 * 4 3 2 6 6 C 1.38448 * 120.21733 * 359.44924 * 5 4 3 7 7 C 1.38234 * 120.34364 * 0.28026 * 6 5 4 8 8 C 1.50709 * 119.93606 * 179.97438 * 7 6 5 9 9 S 1.81397 * 109.47082 * 89.99998 * 8 7 6 10 10 C 1.81401 * 102.99598 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.46931 * 179.97438 * 10 9 8 12 12 H 1.08004 * 120.00151 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00320 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99660 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00389 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47130 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47110 * 119.99897 * 15 13 11 18 18 H 1.48504 * 109.47064 * 239.99593 * 15 13 11 19 19 C 1.38275 * 120.12720 * 359.97438 * 7 6 5 20 20 F 1.35094 * 120.11370 * 179.97438 * 19 7 6 21 21 H 1.07997 * 120.06850 * 0.04462 * 4 3 2 22 22 H 1.08002 * 119.89504 * 179.73310 * 5 4 3 23 23 H 1.07999 * 119.83019 * 180.30169 * 6 5 4 24 24 H 1.09000 * 109.46590 * 210.00159 * 8 7 6 25 25 H 1.08998 * 109.46517 * 329.99682 * 8 7 6 26 26 H 1.09000 * 109.47123 * 299.99541 * 10 9 8 27 27 H 1.08996 * 109.47339 * 60.00122 * 10 9 8 28 28 H 0.96998 * 119.99829 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 0.9004 0.8059 5 6 4.6482 0.8999 0.7965 6 6 5.3392 0.0031 -0.0003 7 6 4.6541 -0.8950 -0.7971 8 6 5.4156 -1.8668 -1.6614 9 16 5.7229 -3.3925 -0.7294 10 6 6.6341 -4.4186 -1.9157 11 6 6.9692 -5.7434 -1.2804 12 1 6.6649 -5.9475 -0.2645 13 6 7.6644 -6.6950 -1.9961 14 7 8.0345 -6.4467 -3.2335 15 14 8.0792 -8.3374 -1.2089 16 1 7.5541 -8.3674 0.1798 17 1 7.4606 -9.4341 -1.9963 18 1 9.5532 -8.5163 -1.1842 19 6 3.2714 -0.9034 -0.8027 20 9 2.6020 -1.7808 -1.5818 21 1 2.7330 1.5979 1.4321 22 1 5.1910 1.5984 1.4162 23 1 6.4192 0.0049 0.0008 24 1 4.8306 -2.0965 -2.5519 25 1 6.3666 -1.4230 -1.9558 26 1 6.0190 -4.5847 -2.8002 27 1 7.5546 -3.9109 -2.2035 28 1 8.5239 -7.1160 -3.7369 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413016400.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:50 Heat of formation + Delta-G solvation = -4.053340 kcal Electronic energy + Delta-G solvation = -14644.175180 eV Core-core repulsion = 11893.604303 eV Total energy + Delta-G solvation = -2750.570877 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.048 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.06182 -39.47555 -36.67900 -33.19392 -33.11841 -31.12622 -28.61063 -27.22853 -24.26964 -23.16395 -21.99586 -18.92380 -17.56316 -16.82020 -16.51816 -16.00128 -15.36525 -15.06736 -14.53524 -14.13197 -13.86375 -13.62393 -13.44343 -13.36637 -12.91038 -12.75270 -12.44209 -12.13402 -12.06426 -11.75122 -11.45540 -10.91979 -10.74008 -10.26331 -9.63113 -9.13872 -8.99883 -8.73934 -8.65233 -6.78049 -6.22965 -4.27273 0.42079 0.82627 2.40091 2.44661 2.88125 3.23243 3.30711 3.36740 3.54935 3.58070 3.74767 3.92598 4.32975 4.43774 4.61356 4.84285 4.90956 5.14501 5.21327 5.45941 5.69798 5.74623 5.84579 5.95420 6.11800 6.48301 7.03795 7.06327 7.26128 7.71771 7.96587 8.74806 9.36160 10.88283 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.037803 B = 0.004463 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.495955 B = 6271.615251 C = 6570.564190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C 0.258 3.742 3 C -0.067 4.067 4 C -0.048 4.048 5 C -0.130 4.130 6 C -0.046 4.046 7 C -0.089 4.089 8 C -0.060 4.060 9 S -0.290 6.290 10 C 0.090 3.910 11 C -0.512 4.512 12 H 0.068 0.932 13 C 0.065 3.935 14 N -0.892 5.892 15 Si 0.907 3.093 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.281 1.281 19 C 0.161 3.839 20 F -0.118 7.118 21 H 0.141 0.859 22 H 0.142 0.858 23 H 0.144 0.856 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 15.714 5.659 17.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.085 5.085 2 C -0.058 4.058 3 C -0.072 4.072 4 C -0.069 4.069 5 C -0.148 4.148 6 C -0.066 4.066 7 C -0.091 4.091 8 C -0.208 4.208 9 S -0.062 6.062 10 C -0.057 4.057 11 C -0.551 4.551 12 H 0.086 0.914 13 C -0.139 4.139 14 N -0.531 5.531 15 Si 0.734 3.266 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.207 1.207 19 C 0.137 3.863 20 F -0.097 7.097 21 H 0.159 0.841 22 H 0.159 0.841 23 H 0.162 0.838 24 H 0.107 0.893 25 H 0.112 0.888 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.161 15.322 6.478 17.740 hybrid contribution 0.950 -0.867 -1.166 1.736 sum -5.212 14.455 5.312 16.258 Atomic orbital electron populations 1.81227 1.11798 1.07674 1.07843 1.25337 0.92317 0.94042 0.94061 1.15930 0.84903 1.02124 1.04195 1.21040 0.94341 0.95866 0.95670 1.21115 0.93389 1.00064 1.00240 1.21261 1.01219 0.91917 0.92238 1.19440 0.90851 0.98365 1.00452 1.22154 1.02337 0.96576 0.99683 1.86885 1.76641 1.13150 1.29479 1.21101 0.95751 0.95403 0.93456 1.20700 1.36610 0.97644 1.00190 0.91395 1.24966 0.95203 0.98879 0.94821 1.69960 1.38460 1.35284 1.09348 0.86291 0.78128 0.82648 0.79579 1.19394 1.20714 1.20706 1.17462 0.89445 0.88335 0.91071 1.91570 1.80165 1.66236 1.71686 0.84128 0.84068 0.83792 0.89314 0.88843 0.94480 0.94435 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.07 18.54 41.84 0.78 -5.30 15 2 C 0.26 3.33 14.98 -22.47 -0.34 2.99 15 3 C -0.07 -0.75 5.74 -106.82 -0.61 -1.37 15 4 C -0.05 -0.38 9.76 -39.17 -0.38 -0.76 15 5 C -0.13 -0.95 10.03 -39.64 -0.40 -1.35 15 6 C -0.05 -0.44 9.69 -39.51 -0.38 -0.82 15 7 C -0.09 -1.14 5.14 -104.61 -0.54 -1.68 15 8 C -0.06 -0.93 5.89 36.01 0.21 -0.72 15 9 S -0.29 -6.02 21.64 -107.50 -2.33 -8.34 15 10 C 0.09 2.26 5.70 36.01 0.21 2.46 15 11 C -0.51 -14.19 9.13 -34.44 -0.31 -14.51 15 12 H 0.07 1.89 7.71 -52.48 -0.40 1.49 15 13 C 0.07 1.80 5.46 -17.82 -0.10 1.71 15 14 N -0.89 -25.57 13.29 55.43 0.74 -24.83 15 15 Si 0.91 21.15 29.54 -169.99 -5.02 16.12 15 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 19 C 0.16 2.14 7.22 -38.96 -0.28 1.86 15 20 F -0.12 -1.86 16.02 2.25 0.04 -1.82 15 21 H 0.14 0.74 8.06 -52.49 -0.42 0.32 15 22 H 0.14 0.60 8.06 -52.49 -0.42 0.18 15 23 H 0.14 1.17 8.06 -52.49 -0.42 0.74 15 24 H 0.09 1.40 7.63 -51.92 -0.40 1.01 15 25 H 0.09 1.29 8.08 -51.92 -0.42 0.87 15 26 H 0.04 0.98 8.14 -51.92 -0.42 0.56 15 27 H 0.04 0.97 8.14 -51.93 -0.42 0.54 15 28 H 0.27 7.13 8.31 -40.82 -0.34 6.79 15 LS Contribution 281.25 15.07 4.24 4.24 Total: -1.00 -30.61 281.25 -6.96 -37.56 By element: Atomic # 1 Polarization: -2.97 SS G_CDS: -2.47 Total: -5.44 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -2.93 Total: -12.19 kcal Atomic # 7 Polarization: -31.64 SS G_CDS: 1.51 Total: -30.13 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -6.02 SS G_CDS: -2.33 Total: -8.34 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.61 -6.96 -37.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413016400.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.508 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds