Wall clock time and date at job start Sun Mar 29 2020 23:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39704 * 120.12549 * 288.20863 * 3 2 1 5 5 C 1.37823 * 119.87471 * 179.97438 * 4 3 2 6 6 C 1.38663 * 120.12589 * 0.02562 * 5 4 3 7 7 F 1.35105 * 119.87536 * 179.97438 * 6 5 4 8 8 C 1.38613 * 120.25087 * 359.97438 * 6 5 4 9 9 C 1.50703 * 119.93787 * 179.97438 * 8 6 5 10 10 S 1.81401 * 109.47002 * 89.99774 * 9 8 6 11 11 C 1.81397 * 102.99785 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47105 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00088 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00111 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00117 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00188 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46819 * 90.00324 * 16 14 12 18 18 H 1.48492 * 109.47137 * 210.00811 * 16 14 12 19 19 H 1.48497 * 109.46769 * 330.00717 * 16 14 12 20 20 C 1.37867 * 120.12721 * 0.25034 * 8 6 5 21 21 H 1.08005 * 120.05992 * 359.97438 * 4 3 2 22 22 H 1.08001 * 119.94004 * 180.02562 * 5 4 3 23 23 H 1.09002 * 109.47152 * 329.99874 * 9 8 6 24 24 H 1.09001 * 109.46980 * 209.99975 * 9 8 6 25 25 H 1.09004 * 109.47371 * 299.99984 * 11 10 9 26 26 H 1.09000 * 109.47527 * 60.00229 * 11 10 9 27 27 H 0.96998 * 120.00518 * 179.97438 * 15 14 12 28 28 H 1.07999 * 120.07094 * 179.72921 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2693 -0.3766 1.1478 5 6 4.6475 -0.3746 1.1419 6 6 5.3381 0.0014 -0.0002 7 9 6.6891 0.0020 -0.0002 8 6 4.6475 0.3767 -1.1420 9 6 5.4051 0.7846 -2.3792 10 16 5.7105 -0.6763 -3.4103 11 6 6.6157 0.0060 -4.8265 12 6 6.9477 -1.1026 -5.7918 13 1 6.6448 -2.1163 -5.5749 14 6 7.6391 -0.8230 -6.9515 15 7 7.9292 -1.7906 -7.7937 16 14 8.1637 0.9302 -7.3266 17 1 9.5131 1.1755 -6.7572 18 1 8.2028 1.1313 -8.7973 19 1 7.1921 1.8773 -6.7231 20 6 3.2688 0.3829 -1.1461 21 1 2.7325 -0.6693 2.0381 22 1 5.1908 -0.6665 2.0286 23 1 6.3567 1.2317 -2.0917 24 1 4.8180 1.5103 -2.9420 25 1 5.9979 0.7510 -5.3280 26 1 7.5370 0.4729 -4.4782 27 1 8.4153 -1.5939 -8.6097 28 1 2.7317 0.6796 -2.0349 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413017534.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:47 Heat of formation + Delta-G solvation = -0.504740 kcal Electronic energy + Delta-G solvation = -14595.072077 eV Core-core repulsion = 11844.655079 eV Total energy + Delta-G solvation = -2750.416998 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.048 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.06359 -39.62271 -36.62376 -33.22749 -33.07931 -31.24749 -29.42916 -27.35051 -23.99873 -22.92166 -22.19854 -18.70437 -17.78747 -16.96338 -16.93815 -16.00400 -15.42657 -14.72588 -14.29790 -14.12559 -14.12121 -13.86711 -13.75780 -13.45283 -13.28475 -12.74606 -12.59183 -12.42875 -12.09205 -12.03217 -11.39615 -10.86305 -10.67556 -10.20032 -9.77035 -9.29063 -9.09520 -8.77618 -8.75450 -6.91856 -6.21910 -4.24695 0.35229 0.79676 2.25343 2.42947 2.77654 3.18015 3.25470 3.25662 3.52088 3.54602 3.59945 3.94558 4.26895 4.34507 4.41719 4.71920 4.92744 5.09063 5.16770 5.40546 5.54471 5.69558 5.71122 5.86830 5.94400 6.42957 6.51256 6.62577 7.24218 7.37187 8.25598 8.80499 9.33226 10.90067 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.031330 B = 0.004779 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.501224 B = 5857.858122 C = 6306.460715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.260 3.740 3 C -0.043 4.043 4 C -0.044 4.044 5 C -0.155 4.155 6 C 0.146 3.854 7 F -0.122 7.122 8 C -0.092 4.092 9 C -0.069 4.069 10 S -0.252 6.252 11 C 0.046 3.954 12 C -0.516 4.516 13 H 0.084 0.916 14 C 0.080 3.920 15 N -0.890 5.890 16 Si 0.878 3.122 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.266 1.266 20 C -0.026 4.026 21 H 0.142 0.858 22 H 0.147 0.853 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.036 0.964 26 H 0.032 0.968 27 H 0.268 0.732 28 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.907 6.687 17.464 19.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.093 5.093 2 C -0.055 4.055 3 C -0.047 4.047 4 C -0.066 4.066 5 C -0.174 4.174 6 C 0.124 3.876 7 F -0.100 7.100 8 C -0.094 4.094 9 C -0.216 4.216 10 S -0.023 6.023 11 C -0.102 4.102 12 C -0.554 4.554 13 H 0.102 0.898 14 C -0.125 4.125 15 N -0.527 5.527 16 Si 0.705 3.295 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.191 1.191 20 C -0.049 4.049 21 H 0.160 0.840 22 H 0.165 0.835 23 H 0.109 0.891 24 H 0.111 0.889 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.796 5.602 17.427 19.896 hybrid contribution 1.472 2.057 -0.645 2.611 sum -6.324 7.659 16.782 19.501 Atomic orbital electron populations 1.81264 1.11977 1.08763 1.07296 1.25535 0.92440 0.93700 0.93871 1.15920 0.84588 1.08041 0.96108 1.20966 0.93111 0.95572 0.96910 1.21027 0.94320 1.03876 0.98158 1.17785 0.77418 0.98204 0.94221 1.91563 1.28303 1.93298 1.96872 1.19316 0.93588 1.02513 0.93962 1.22231 1.02591 1.01197 0.95598 1.87030 1.75971 1.14594 1.24661 1.21460 0.96268 0.99710 0.92751 1.20452 1.37420 0.94573 1.03001 0.89808 1.24859 0.94912 0.97287 0.95402 1.69861 1.39536 1.32046 1.11283 0.86803 0.79619 0.85065 0.78016 1.19849 1.20774 1.19082 1.20969 0.92333 0.94589 0.96988 0.84008 0.83480 0.89117 0.88930 0.94572 0.95008 0.92164 0.83645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.45 18.54 41.84 0.78 -4.67 15 2 C 0.26 2.80 15.33 -22.47 -0.34 2.45 15 3 C -0.04 -0.40 5.73 -106.89 -0.61 -1.01 15 4 C -0.04 -0.33 9.75 -39.19 -0.38 -0.71 15 5 C -0.15 -1.27 10.01 -39.58 -0.40 -1.67 15 6 C 0.15 1.64 7.25 -39.29 -0.28 1.36 15 7 F -0.12 -1.59 16.46 2.25 0.04 -1.55 15 8 C -0.09 -1.10 5.14 -104.62 -0.54 -1.64 15 9 C -0.07 -0.99 5.89 36.01 0.21 -0.78 15 10 S -0.25 -5.02 21.64 -107.50 -2.33 -7.35 15 11 C 0.05 1.07 4.77 36.01 0.17 1.24 15 12 C -0.52 -14.45 9.68 -34.44 -0.33 -14.78 15 13 H 0.08 2.59 7.96 -52.49 -0.42 2.17 15 14 C 0.08 2.26 5.47 -17.82 -0.10 2.16 15 15 N -0.89 -26.60 13.96 55.43 0.77 -25.83 15 16 Si 0.88 20.56 27.47 -169.99 -4.67 15.89 15 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 19 H -0.27 -5.90 6.54 56.52 0.37 -5.53 15 20 C -0.03 -0.27 9.40 -39.18 -0.37 -0.64 15 21 H 0.14 0.68 8.06 -52.48 -0.42 0.26 15 22 H 0.15 0.85 8.06 -52.49 -0.42 0.43 15 23 H 0.09 1.27 7.63 -51.92 -0.40 0.87 15 24 H 0.09 1.18 8.08 -51.92 -0.42 0.76 15 25 H 0.04 0.82 7.20 -51.92 -0.37 0.45 15 26 H 0.03 0.72 7.57 -51.92 -0.39 0.33 15 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 15 28 H 0.15 1.38 8.06 -52.49 -0.42 0.95 15 LS Contribution 278.15 15.07 4.19 4.19 Total: -1.00 -30.93 278.15 -6.63 -37.56 By element: Atomic # 1 Polarization: -1.79 SS G_CDS: -2.44 Total: -4.22 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -2.97 Total: -14.02 kcal Atomic # 7 Polarization: -32.04 SS G_CDS: 1.55 Total: -30.49 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.67 Total: 15.89 kcal Atomic # 16 Polarization: -5.02 SS G_CDS: -2.33 Total: -7.35 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.93 -6.63 -37.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017534.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.053 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds