Wall clock time and date at job start Sun Mar 29 2020 23:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39704 * 120.12549 * 288.20863 * 3 2 1 5 5 C 1.37823 * 119.87471 * 179.97438 * 4 3 2 6 6 C 1.38663 * 120.12589 * 0.02562 * 5 4 3 7 7 F 1.35105 * 119.87536 * 179.97438 * 6 5 4 8 8 C 1.38613 * 120.25087 * 359.97438 * 6 5 4 9 9 C 1.50703 * 119.93787 * 179.97438 * 8 6 5 10 10 S 1.81401 * 109.47002 * 89.99774 * 9 8 6 11 11 C 1.81397 * 102.99785 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47105 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00088 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00111 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00117 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00188 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46819 * 90.00324 * 16 14 12 18 18 H 1.48492 * 109.47137 * 210.00811 * 16 14 12 19 19 H 1.48497 * 109.46769 * 330.00717 * 16 14 12 20 20 C 1.37867 * 120.12721 * 0.25034 * 8 6 5 21 21 H 1.08005 * 120.05992 * 359.97438 * 4 3 2 22 22 H 1.08001 * 119.94004 * 180.02562 * 5 4 3 23 23 H 1.09002 * 109.47152 * 329.99874 * 9 8 6 24 24 H 1.09001 * 109.46980 * 209.99975 * 9 8 6 25 25 H 1.09004 * 109.47371 * 299.99984 * 11 10 9 26 26 H 1.09000 * 109.47527 * 60.00229 * 11 10 9 27 27 H 0.96998 * 120.00518 * 179.97438 * 15 14 12 28 28 H 1.07999 * 120.07094 * 179.72921 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2693 -0.3766 1.1478 5 6 4.6475 -0.3746 1.1419 6 6 5.3381 0.0014 -0.0002 7 9 6.6891 0.0020 -0.0002 8 6 4.6475 0.3767 -1.1420 9 6 5.4051 0.7846 -2.3792 10 16 5.7105 -0.6763 -3.4103 11 6 6.6157 0.0060 -4.8265 12 6 6.9477 -1.1026 -5.7918 13 1 6.6448 -2.1163 -5.5749 14 6 7.6391 -0.8230 -6.9515 15 7 7.9292 -1.7906 -7.7937 16 14 8.1637 0.9302 -7.3266 17 1 9.5131 1.1755 -6.7572 18 1 8.2028 1.1313 -8.7973 19 1 7.1921 1.8773 -6.7231 20 6 3.2688 0.3829 -1.1461 21 1 2.7325 -0.6693 2.0381 22 1 5.1908 -0.6665 2.0286 23 1 6.3567 1.2317 -2.0917 24 1 4.8180 1.5103 -2.9420 25 1 5.9979 0.7510 -5.3280 26 1 7.5370 0.4729 -4.4782 27 1 8.4153 -1.5939 -8.6097 28 1 2.7317 0.6796 -2.0349 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413017534.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:47 Heat of formation + Delta-G solvation = -17.979405 kcal Electronic energy + Delta-G solvation = -14595.829836 eV Core-core repulsion = 11844.655079 eV Total energy + Delta-G solvation = -2751.174756 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.048 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.97368 -40.41031 -37.53358 -35.19919 -34.09438 -32.02578 -31.44984 -28.33657 -24.82249 -24.68959 -23.25807 -19.61609 -19.02912 -18.60135 -17.78654 -17.25833 -16.73604 -16.10430 -15.53416 -15.21221 -15.02064 -14.97595 -14.80076 -14.73334 -14.49503 -14.27001 -13.97085 -13.52124 -13.17149 -13.05303 -12.65363 -12.36094 -12.21865 -11.91002 -11.77639 -10.89513 -10.79506 -10.02219 -9.69365 -8.51293 -8.36969 -6.46902 -0.45137 -0.01487 1.04318 1.34800 1.36716 1.47112 1.57769 1.80779 1.98563 2.29675 2.72637 2.78139 2.96117 3.16085 3.44618 3.67806 3.96698 4.09362 4.36034 4.51913 4.62441 4.70021 4.76987 4.83930 5.01778 5.09853 5.15603 5.33976 5.67064 6.07009 6.40798 6.57392 7.15565 8.78906 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.031330 B = 0.004779 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.501224 B = 5857.858122 C = 6306.460715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.284 3.716 3 C -0.045 4.045 4 C -0.021 4.021 5 C -0.144 4.144 6 C 0.132 3.868 7 F -0.137 7.137 8 C -0.114 4.114 9 C -0.048 4.048 10 S -0.295 6.295 11 C 0.048 3.952 12 C -0.530 4.530 13 H 0.034 0.966 14 C 0.017 3.983 15 N -0.941 5.941 16 Si 0.954 3.046 17 H -0.262 1.262 18 H -0.278 1.278 19 H -0.242 1.242 20 C -0.023 4.023 21 H 0.178 0.822 22 H 0.177 0.823 23 H 0.094 0.906 24 H 0.110 0.890 25 H 0.046 0.954 26 H 0.041 0.959 27 H 0.272 0.728 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.286 8.694 19.643 22.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.031 4.031 3 C -0.049 4.049 4 C -0.042 4.042 5 C -0.162 4.162 6 C 0.110 3.890 7 F -0.115 7.115 8 C -0.116 4.116 9 C -0.195 4.195 10 S -0.065 6.065 11 C -0.100 4.100 12 C -0.568 4.568 13 H 0.053 0.947 14 C -0.182 4.182 15 N -0.580 5.580 16 Si 0.776 3.224 17 H -0.187 1.187 18 H -0.204 1.204 19 H -0.165 1.165 20 C -0.046 4.046 21 H 0.195 0.805 22 H 0.195 0.805 23 H 0.113 0.887 24 H 0.129 0.871 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.182 7.604 19.615 22.572 hybrid contribution 1.516 1.343 -1.164 2.336 sum -6.667 8.947 18.451 21.562 Atomic orbital electron populations 1.81300 1.13221 1.10324 1.08649 1.25611 0.92417 0.92432 0.92626 1.15939 0.83732 1.08613 0.96596 1.21365 0.92829 0.92799 0.97164 1.21337 0.94540 1.02381 0.97974 1.18134 0.76956 0.98707 0.95183 1.91530 1.29464 1.93510 1.96992 1.19157 0.94023 1.05055 0.93387 1.22213 1.03613 0.98201 0.95474 1.87044 1.75497 1.19225 1.24777 1.21226 0.97260 0.98141 0.93347 1.20681 1.37499 0.94003 1.04656 0.94737 1.25930 0.94703 1.02632 0.94969 1.70025 1.40825 1.35009 1.12123 0.85606 0.79931 0.78846 0.78003 1.18712 1.20385 1.16541 1.21006 0.91774 0.94134 0.97670 0.80499 0.80521 0.88709 0.87138 0.93593 0.94123 0.91872 0.83177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.28 18.54 19.00 0.35 -10.93 15 2 C 0.28 5.46 15.33 88.33 1.35 6.82 15 3 C -0.05 -0.70 5.73 -21.33 -0.12 -0.82 15 4 C -0.02 -0.22 9.75 22.53 0.22 0.00 15 5 C -0.14 -1.80 10.01 22.27 0.22 -1.58 15 6 C 0.13 2.67 7.25 22.46 0.16 2.83 15 7 F -0.14 -3.34 16.46 44.97 0.74 -2.60 15 8 C -0.11 -2.51 5.14 -19.86 -0.10 -2.62 15 9 C -0.05 -1.30 5.89 71.24 0.42 -0.88 15 10 S -0.29 -11.79 21.64 -56.49 -1.22 -13.01 15 11 C 0.05 2.23 4.77 71.24 0.34 2.57 15 12 C -0.53 -30.69 9.68 25.60 0.25 -30.44 15 13 H 0.03 2.27 7.96 -2.91 -0.02 2.24 15 14 C 0.02 1.00 5.47 84.65 0.46 1.46 15 15 N -0.94 -58.11 13.96 21.45 0.30 -57.81 15 16 Si 0.95 42.12 27.47 68.60 1.88 44.01 15 17 H -0.26 -11.08 7.11 99.48 0.71 -10.37 15 18 H -0.28 -12.04 7.11 99.48 0.71 -11.33 15 19 H -0.24 -9.66 6.54 99.48 0.65 -9.01 15 20 C -0.02 -0.43 9.40 22.53 0.21 -0.22 15 21 H 0.18 0.72 8.06 -2.91 -0.02 0.70 15 22 H 0.18 1.20 8.06 -2.91 -0.02 1.17 15 23 H 0.09 2.49 7.63 -2.39 -0.02 2.47 15 24 H 0.11 2.58 8.08 -2.39 -0.02 2.56 15 25 H 0.05 2.02 7.20 -2.39 -0.02 2.00 15 26 H 0.04 1.79 7.57 -2.39 -0.02 1.78 15 27 H 0.27 15.50 8.31 -92.71 -0.77 14.73 15 28 H 0.15 2.57 8.06 -2.91 -0.02 2.55 15 Total: -1.00 -70.33 278.15 6.60 -63.73 By element: Atomic # 1 Polarization: -1.64 SS G_CDS: 1.13 Total: -0.52 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: 3.42 Total: -22.87 kcal Atomic # 7 Polarization: -69.39 SS G_CDS: 0.65 Total: -68.74 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.74 Total: -2.60 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.88 Total: 44.01 kcal Atomic # 16 Polarization: -11.79 SS G_CDS: -1.22 Total: -13.01 kcal Total: -70.33 6.60 -63.73 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017534.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.753 kcal (2) G-P(sol) polarization free energy of solvation -70.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds