Wall clock time and date at job start Sun Mar 29 2020 22:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.46038 * 2 1 4 4 C 1.54378 * 110.41267 * 237.58314 * 2 1 3 5 5 H 1.08998 * 110.32479 * 336.26655 * 4 2 1 6 6 C 1.52996 * 110.41061 * 98.42912 * 4 2 1 7 7 C 1.54258 * 105.06170 * 217.36677 * 4 2 1 8 8 H 1.08997 * 110.41307 * 241.06141 * 7 4 2 9 9 C 1.52997 * 110.32551 * 118.89537 * 7 4 2 10 10 C 1.54378 * 105.05844 * 0.02562 * 7 4 2 11 11 N 1.48560 * 110.40998 * 122.40970 * 2 1 3 12 12 C 1.46903 * 111.00131 * 277.81903 * 11 2 1 13 13 C 1.52996 * 109.47168 * 178.90982 * 12 11 2 14 14 H 1.08997 * 109.47474 * 55.81809 * 13 12 11 15 15 C 1.47211 * 109.46971 * 295.81760 * 13 12 11 16 16 N 4.90285 * 82.74689 * 123.09396 * 2 1 3 17 17 C 1.52996 * 109.46951 * 175.82129 * 13 12 11 18 18 C 1.50703 * 109.46946 * 184.99882 * 17 13 12 19 19 H 1.07998 * 120.00275 * 359.97438 * 18 17 13 20 20 C 1.37884 * 119.99709 * 180.02562 * 18 17 13 21 21 N 1.31520 * 119.99529 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 120.00367 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.47471 * 89.99977 * 22 20 18 24 24 H 1.48498 * 109.47160 * 210.00395 * 22 20 18 25 25 H 1.48500 * 109.46982 * 330.00111 * 22 20 18 26 26 H 1.08998 * 109.47281 * 299.04188 * 1 2 3 27 27 H 1.09003 * 109.47216 * 59.04394 * 1 2 3 28 28 H 1.09005 * 109.47153 * 179.04173 * 1 2 3 29 29 H 1.09001 * 109.47481 * 177.14198 * 6 4 2 30 30 H 1.09003 * 109.47005 * 297.14316 * 6 4 2 31 31 H 1.08996 * 109.47361 * 57.13884 * 6 4 2 32 32 H 1.09007 * 109.47139 * 302.91204 * 9 7 4 33 33 H 1.08999 * 109.47365 * 62.91083 * 9 7 4 34 34 H 1.08997 * 109.47583 * 182.91408 * 9 7 4 35 35 H 1.08995 * 110.41268 * 265.07208 * 10 7 4 36 36 H 1.09000 * 110.51362 * 142.68101 * 10 7 4 37 37 H 1.08997 * 109.47224 * 298.90882 * 12 11 2 38 38 H 1.09000 * 109.46599 * 58.90704 * 12 11 2 39 39 H 1.08996 * 109.47261 * 304.99471 * 17 13 12 40 40 H 1.09001 * 109.47372 * 65.00010 * 17 13 12 41 41 H 0.96997 * 120.00001 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0685 -0.7756 -1.2214 5 1 1.3236 -1.4881 -1.5759 6 6 2.4515 0.1930 -2.3420 7 6 3.3178 -1.5188 -0.7053 8 1 4.2050 -1.1939 -1.2487 9 6 3.1330 -3.0310 -0.8472 10 6 3.4287 -1.1303 0.7846 11 7 2.0481 -0.7462 1.1755 12 6 2.0568 0.1015 2.3752 13 6 2.5698 -0.7079 3.5679 14 1 3.5516 -1.1188 3.3329 15 6 1.6335 -1.8073 3.8539 16 7 0.9110 -2.6556 4.0746 17 6 2.6776 0.2019 4.7931 18 6 3.2977 -0.5631 5.9339 19 1 3.5856 -1.5952 5.7987 20 6 3.4964 0.0543 7.1507 21 7 4.0370 -0.6136 8.1464 22 14 2.9978 1.8391 7.3849 23 1 1.5933 1.9022 7.8628 24 1 3.8906 2.4751 8.3867 25 1 3.1132 2.5591 6.0912 26 1 -0.3634 0.4989 0.8984 27 1 -0.3634 0.5286 -0.8813 28 1 -0.3634 -1.0276 -0.0172 29 1 2.8764 -0.3658 -3.1759 30 1 1.5639 0.7288 -2.6783 31 1 3.1872 0.9061 -1.9702 32 1 2.2366 -3.3396 -0.3093 33 1 3.0303 -3.2871 -1.9017 34 1 4.0005 -3.5436 -0.4317 35 1 4.1068 -0.2858 0.9078 36 1 3.7694 -1.9797 1.3766 37 1 2.7098 0.9584 2.2098 38 1 1.0448 0.4502 2.5809 39 1 3.3006 1.0633 4.5523 40 1 1.6831 0.5421 5.0818 41 1 4.1772 -0.1792 9.0022 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419395657.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:24 Heat of formation + Delta-G solvation = 4.989797 kcal Electronic energy + Delta-G solvation = -18767.602906 eV Core-core repulsion = 16067.516454 eV Total energy + Delta-G solvation = -2700.086452 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.80053 -36.64196 -34.30052 -33.16983 -32.39681 -31.38089 -29.03973 -27.44958 -25.31215 -24.07770 -22.52167 -21.47781 -20.21687 -19.81614 -16.89436 -16.57481 -15.80936 -15.19492 -14.72904 -14.33199 -14.00230 -13.70397 -13.40134 -13.36604 -12.90189 -12.86080 -12.55943 -12.47135 -12.20812 -12.01925 -11.74109 -11.63647 -11.37387 -11.32601 -11.23887 -11.01910 -10.70504 -10.66361 -10.57813 -10.35405 -10.20924 -9.94830 -9.71277 -9.31516 -8.61145 -8.35173 -6.10100 -4.10566 3.27039 3.34503 3.34881 3.72915 3.81505 4.01878 4.38641 4.47493 4.52824 4.77143 4.87537 5.13782 5.21673 5.24869 5.29387 5.32845 5.39569 5.42892 5.51654 5.59883 5.63473 5.72394 5.77064 5.82079 5.88117 5.93282 5.96311 6.06783 6.07571 6.20274 6.25995 6.28595 6.31074 6.36958 6.94507 6.98444 7.12804 7.14729 7.64501 8.41601 8.58315 8.93690 9.49813 11.03079 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.028954 B = 0.005279 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.831325 B = 5302.836940 C = 5520.545444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.062 3.938 3 H 0.053 0.947 4 C -0.089 4.089 5 H 0.080 0.920 6 C -0.143 4.143 7 C -0.092 4.092 8 H 0.073 0.927 9 C -0.140 4.140 10 C 0.033 3.967 11 N -0.507 5.507 12 C 0.049 3.951 13 C 0.022 3.978 14 H 0.104 0.896 15 C 0.254 3.746 16 N -0.471 5.471 17 C -0.005 4.005 18 C -0.527 4.527 19 H 0.074 0.926 20 C 0.071 3.929 21 N -0.897 5.897 22 Si 0.877 3.123 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.263 1.263 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.080 0.920 39 H 0.036 0.964 40 H 0.020 0.980 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 4.014 -20.866 21.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.046 4.046 3 H 0.071 0.929 4 C -0.108 4.108 5 H 0.098 0.902 6 C -0.201 4.201 7 C -0.111 4.111 8 H 0.092 0.908 9 C -0.197 4.197 10 C -0.095 4.095 11 N -0.231 5.231 12 C -0.080 4.080 13 C 0.000 4.000 14 H 0.121 0.879 15 C -0.064 4.064 16 N -0.148 5.148 17 C -0.044 4.044 18 C -0.565 4.565 19 H 0.092 0.908 20 C -0.131 4.131 21 N -0.535 5.535 22 Si 0.704 3.296 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.188 1.188 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.054 0.946 40 H 0.039 0.961 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.064 2.280 -20.200 20.558 hybrid contribution 0.616 1.974 0.225 2.080 sum -2.448 4.254 -19.975 20.569 Atomic orbital electron populations 1.21709 0.94084 1.02396 1.01188 1.22693 0.95950 0.95743 0.90211 0.92945 1.22029 0.97250 0.97041 0.94470 0.90202 1.21854 1.01209 0.99014 0.97978 1.21951 0.97524 0.96125 0.95506 0.90814 1.21803 1.02343 0.94616 1.00946 1.23229 0.90208 1.00780 0.95287 1.65386 1.18060 1.37230 1.02423 1.22429 1.01995 0.94247 0.89335 1.18941 0.94751 0.90216 0.96099 0.87853 1.28676 0.93231 0.93465 0.90983 1.80984 1.11405 1.11623 1.10780 1.19645 0.97707 0.95063 0.92007 1.21027 1.40998 0.99755 0.94685 0.90794 1.24988 0.94415 0.97912 0.95765 1.69909 1.43716 1.36973 1.02935 0.86819 0.78789 0.85529 0.78416 1.20224 1.21259 1.18791 0.92619 0.92671 0.91940 0.92612 0.92704 0.92726 0.91914 0.93210 0.92741 0.93437 0.89719 0.92884 0.90177 0.94614 0.96123 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.35 37.16 0.35 -1.11 16 2 C 0.06 0.69 2.43 -66.07 -0.16 0.53 16 3 H 0.05 0.56 7.69 -51.93 -0.40 0.16 16 4 C -0.09 -0.86 2.85 -89.24 -0.25 -1.11 16 5 H 0.08 0.80 7.41 -51.93 -0.38 0.41 16 6 C -0.14 -1.13 8.92 37.16 0.33 -0.79 16 7 C -0.09 -0.93 3.30 -89.24 -0.29 -1.22 16 8 H 0.07 0.67 7.71 -51.93 -0.40 0.27 16 9 C -0.14 -1.41 8.90 37.16 0.33 -1.08 16 10 C 0.03 0.39 5.12 -2.20 -0.01 0.38 16 11 N -0.51 -6.75 4.76 -222.16 -1.06 -7.80 16 12 C 0.05 0.71 4.12 -3.82 -0.02 0.70 16 13 C 0.02 0.40 2.16 -93.41 -0.20 0.20 16 14 H 0.10 1.81 6.91 -51.93 -0.36 1.45 16 15 C 0.25 5.36 13.65 -20.76 -0.28 5.08 16 16 N -0.47 -10.91 18.54 42.15 0.78 -10.13 16 17 C -0.01 -0.11 3.49 -27.88 -0.10 -0.21 16 18 C -0.53 -14.32 9.15 -34.44 -0.32 -14.64 16 19 H 0.07 2.21 7.84 -52.49 -0.41 1.80 16 20 C 0.07 2.02 5.47 -17.81 -0.10 1.92 16 21 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 22 Si 0.88 20.78 27.47 -169.99 -4.67 16.11 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 26 H 0.05 0.63 7.42 -51.93 -0.39 0.24 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.43 8.13 -51.93 -0.42 0.01 16 32 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.54 7.88 -51.93 -0.41 0.13 16 36 H 0.08 1.10 7.32 -51.93 -0.38 0.72 16 37 H 0.05 0.69 7.96 -51.93 -0.41 0.28 16 38 H 0.08 1.16 7.37 -51.93 -0.38 0.78 16 39 H 0.04 0.73 7.20 -51.93 -0.37 0.36 16 40 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 328.08 15.07 4.94 4.94 Total: -1.00 -30.80 328.08 -7.19 -37.99 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -7.24 Total: -3.30 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -0.72 Total: -11.36 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.50 Total: -44.38 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.80 -7.19 -37.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419395657.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.981 kcal (2) G-P(sol) polarization free energy of solvation -30.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds