Wall clock time and date at job start Sun Mar 29 2020 22:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46998 * 2 1 4 4 H 1.08995 * 109.47338 * 174.24275 * 3 2 1 5 5 C 1.50709 * 109.46985 * 54.24592 * 3 2 1 6 6 H 1.07994 * 120.00057 * 240.00100 * 5 3 2 7 7 C 1.37877 * 119.99988 * 59.99531 * 5 3 2 8 8 N 1.31522 * 119.99970 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99920 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47127 * 90.00081 * 9 7 5 11 11 H 1.48505 * 109.47107 * 210.00064 * 9 7 5 12 12 H 1.48499 * 109.47172 * 329.99938 * 9 7 5 13 13 N 1.46896 * 109.47448 * 294.24527 * 3 2 1 14 14 C 1.46896 * 111.00220 * 275.11621 * 13 3 2 15 15 C 1.53009 * 109.46959 * 274.80295 * 14 13 3 16 16 C 1.52998 * 109.46868 * 179.97438 * 15 14 13 17 17 C 1.52996 * 109.47515 * 60.00055 * 16 15 14 18 18 C 1.52998 * 109.47515 * 179.97438 * 17 16 15 19 19 C 1.47200 * 109.47106 * 59.99570 * 17 16 15 20 20 N 7.30618 * 103.52606 * 315.34013 * 2 1 3 21 21 C 1.53001 * 109.47036 * 300.00060 * 17 16 15 22 22 C 1.52996 * 109.47624 * 154.80228 * 14 13 3 23 23 H 1.09000 * 109.47109 * 178.66548 * 1 2 3 24 24 H 1.08993 * 109.47716 * 58.66403 * 1 2 3 25 25 H 1.09005 * 109.46534 * 298.66036 * 1 2 3 26 26 H 1.08989 * 109.47393 * 120.00623 * 2 1 3 27 27 H 1.09006 * 109.46355 * 240.00833 * 2 1 3 28 28 H 0.97000 * 119.99931 * 179.97438 * 8 7 5 29 29 H 1.00901 * 111.00092 * 39.06858 * 13 3 2 30 30 H 1.09000 * 109.46885 * 34.80018 * 14 13 3 31 31 H 1.09000 * 109.47096 * 299.99594 * 15 14 13 32 32 H 1.09004 * 109.46855 * 59.99733 * 15 14 13 33 33 H 1.09000 * 109.47086 * 299.99790 * 16 15 14 34 34 H 1.09002 * 109.46952 * 180.02562 * 16 15 14 35 35 H 1.08997 * 109.47090 * 180.02562 * 18 17 16 36 36 H 1.09002 * 109.46952 * 300.00087 * 18 17 16 37 37 H 1.09000 * 109.47086 * 59.99734 * 18 17 16 38 38 H 1.09000 * 109.46918 * 299.99869 * 21 17 16 39 39 H 1.08999 * 109.47579 * 179.97438 * 21 17 16 40 40 H 1.09002 * 109.47081 * 300.00186 * 22 14 13 41 41 H 1.09000 * 109.47161 * 59.99959 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1250 1.4443 0.1031 5 6 1.4246 2.1928 1.1531 6 1 0.8173 3.0660 0.9665 7 6 1.6371 1.7643 2.4463 8 7 2.3771 0.7011 2.6736 9 14 0.8738 2.6939 3.8755 10 1 -0.4675 2.1301 4.1728 11 1 1.7428 2.5619 5.0725 12 1 0.7393 4.1288 3.5173 13 7 1.6670 2.0938 -1.2628 14 6 2.6534 1.8089 -2.3134 15 6 3.8047 2.8121 -2.2175 16 6 4.8323 2.5150 -3.3114 17 6 4.1656 2.6336 -4.6834 18 6 5.1934 2.3371 -5.7773 19 6 3.6430 3.9985 -4.8586 20 7 3.2389 5.0527 -4.9930 21 6 3.0143 1.6305 -4.7793 22 6 1.9863 1.9279 -3.6851 23 1 -0.3633 -1.0274 -0.0239 24 1 -0.3634 0.5344 -0.8777 25 1 -0.3632 0.4929 0.9018 26 1 1.8934 -0.5139 0.8898 27 1 1.8932 -0.5138 -0.8901 28 1 2.5268 0.3998 3.5834 29 1 0.7406 1.8178 -1.5521 30 1 3.0404 0.7982 -2.1840 31 1 3.4177 3.8228 -2.3469 32 1 4.2800 2.7273 -1.2402 33 1 5.2193 1.5043 -3.1816 34 1 5.6528 3.2294 -3.2429 35 1 4.7184 2.4221 -6.7547 36 1 6.0133 3.0521 -5.7088 37 1 5.5807 1.3266 -5.6477 38 1 3.4012 0.6198 -4.6494 39 1 2.5389 1.7152 -5.7565 40 1 1.1660 1.2133 -3.7535 41 1 1.5992 2.9386 -3.8145 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449245127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:51 Heat of formation + Delta-G solvation = -18.410850 kcal Electronic energy + Delta-G solvation = -19065.220742 eV Core-core repulsion = 16364.119562 eV Total energy + Delta-G solvation = -2701.101180 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.74218 -38.22211 -36.55579 -34.69003 -33.08855 -31.80632 -30.77644 -28.22287 -26.14961 -25.11649 -23.69331 -23.42395 -21.64377 -20.71338 -18.21037 -17.45276 -16.75128 -16.57808 -15.80790 -15.78386 -15.38352 -14.79027 -14.60107 -14.40542 -14.23060 -13.95021 -13.86774 -13.60901 -13.15217 -13.04041 -12.98630 -12.80011 -12.63681 -12.43640 -12.42093 -12.28699 -12.00497 -11.95282 -11.74342 -11.50803 -11.39843 -11.21641 -10.85163 -10.83322 -10.39771 -8.82614 -8.03850 -6.10814 1.40558 1.42780 1.52171 1.82374 1.86582 2.46038 2.95999 3.24918 3.60146 3.73436 3.87751 4.04199 4.19705 4.32924 4.49628 4.55585 4.60148 4.61411 4.65468 4.79185 4.84728 4.93050 4.98399 4.99790 5.08527 5.16279 5.18042 5.27889 5.28922 5.39029 5.43413 5.45992 5.51400 5.53792 5.72262 5.79014 5.94003 6.38911 6.65252 6.78119 6.96123 7.05216 7.57076 9.01125 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.031306 B = 0.005438 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.186671 B = 5147.479031 C = 5397.830874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.136 4.136 3 C 0.226 3.774 4 H 0.002 0.998 5 C -0.500 4.500 6 H 0.043 0.957 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.944 3.056 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.278 1.278 13 N -0.695 5.695 14 C 0.089 3.911 15 C -0.108 4.108 16 C -0.100 4.100 17 C 0.039 3.961 18 C -0.136 4.136 19 C 0.242 3.758 20 N -0.500 5.500 21 C -0.098 4.098 22 C -0.120 4.120 23 H 0.043 0.957 24 H 0.048 0.952 25 H 0.036 0.964 26 H 0.060 0.940 27 H 0.032 0.968 28 H 0.258 0.742 29 H 0.330 0.670 30 H 0.042 0.958 31 H 0.035 0.965 32 H 0.042 0.958 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.914 -3.798 -15.997 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.176 4.176 3 C 0.117 3.883 4 H 0.020 0.980 5 C -0.539 4.539 6 H 0.062 0.938 7 C -0.181 4.181 8 N -0.558 5.558 9 Si 0.771 3.229 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.203 1.203 13 N -0.327 5.327 14 C -0.021 4.021 15 C -0.146 4.146 16 C -0.139 4.139 17 C 0.035 3.965 18 C -0.194 4.194 19 C -0.075 4.075 20 N -0.176 5.176 21 C -0.136 4.136 22 C -0.158 4.158 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.149 0.851 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.126 0.874 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.122 0.878 38 H 0.130 0.870 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.640 -1.673 -15.882 16.630 hybrid contribution -0.608 -0.434 1.394 1.582 sum 4.032 -2.107 -14.487 15.185 Atomic orbital electron populations 1.21454 0.96330 0.99250 1.00643 1.21935 0.96160 0.99996 0.99533 1.18911 0.93711 0.89267 0.86422 0.98017 1.21307 1.30136 1.11157 0.91294 0.93837 1.25498 0.96045 0.95911 1.00673 1.69994 1.40100 1.25107 1.20611 0.85772 0.78503 0.79070 0.79546 1.20181 1.21085 1.20306 1.60703 1.04792 1.63451 1.03718 1.21505 0.93094 0.96612 0.90915 1.21525 0.96185 0.98374 0.98542 1.21681 0.97016 1.04844 0.90338 1.18692 0.97193 0.82023 0.98573 1.21902 0.96840 1.04627 0.96017 1.29834 0.91732 0.95005 0.90918 1.81232 1.10910 1.14263 1.11188 1.21686 0.93618 0.99389 0.98936 1.21752 0.98944 1.01266 0.93873 0.93765 0.93340 0.94451 0.92191 0.94926 0.93254 0.85058 0.94045 0.94610 0.93966 0.87414 0.90442 0.90908 0.91587 0.87770 0.87025 0.89231 0.90687 0.93862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.88 9.39 71.98 0.68 -4.21 16 2 C -0.14 -6.16 5.48 30.59 0.17 -5.99 16 3 C 0.23 11.00 2.14 44.17 0.09 11.09 16 4 H 0.00 0.10 7.13 -2.39 -0.02 0.09 16 5 C -0.50 -27.49 7.35 25.60 0.19 -27.30 16 6 H 0.04 2.48 7.81 -2.91 -0.02 2.46 16 7 C 0.02 0.93 5.23 84.65 0.44 1.38 16 8 N -0.92 -52.07 11.39 21.45 0.24 -51.83 16 9 Si 0.94 44.47 29.54 68.60 2.03 46.50 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 13 N -0.70 -28.68 6.04 -473.31 -2.86 -31.54 16 14 C 0.09 2.85 2.29 44.92 0.10 2.95 16 15 C -0.11 -3.45 5.19 30.60 0.16 -3.29 16 16 C -0.10 -2.06 4.71 30.59 0.14 -1.92 16 17 C 0.04 0.68 0.72 -53.99 -0.04 0.64 16 18 C -0.14 -1.39 8.43 71.98 0.61 -0.79 16 19 C 0.24 6.31 11.37 89.43 1.02 7.32 16 20 N -0.50 -16.42 18.54 20.02 0.37 -16.04 16 21 C -0.10 -1.59 4.71 30.61 0.14 -1.44 16 22 C -0.12 -3.00 4.97 30.61 0.15 -2.85 16 23 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.05 1.77 6.42 -2.39 -0.02 1.75 16 25 H 0.04 1.72 7.05 -2.38 -0.02 1.71 16 26 H 0.06 3.11 6.25 -2.39 -0.01 3.09 16 27 H 0.03 1.30 7.36 -2.38 -0.02 1.28 16 28 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 29 H 0.33 12.91 6.20 -89.69 -0.56 12.36 16 30 H 0.04 1.33 7.09 -2.39 -0.02 1.32 16 31 H 0.04 1.30 7.23 -2.39 -0.02 1.29 16 32 H 0.04 1.58 7.44 -2.39 -0.02 1.56 16 33 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.72 8.12 -2.39 -0.02 1.70 16 41 H 0.04 1.27 7.23 -2.39 -0.02 1.26 16 Total: -1.00 -65.99 317.57 4.08 -61.90 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.45 Total: 15.40 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: 3.86 Total: -24.39 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -2.24 Total: -99.41 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -65.99 4.08 -61.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449245127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.494 kcal (2) G-P(sol) polarization free energy of solvation -65.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds