Wall clock time and date at job start Sun Mar 29 2020 22:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00040 * 2 1 4 4 C 1.50696 * 109.47399 * 66.04221 * 3 2 1 5 5 H 1.08005 * 119.99725 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00189 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99790 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00051 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47047 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47167 * 119.99895 * 8 6 4 11 11 H 1.48495 * 109.47058 * 239.99959 * 8 6 4 12 12 C 1.46899 * 111.00255 * 236.04264 * 2 1 3 13 13 C 1.50703 * 109.47107 * 293.95458 * 12 2 1 14 14 N 1.30837 * 126.46362 * 269.68525 * 13 12 2 15 15 N 1.28904 * 109.74045 * 179.79220 * 14 13 12 16 16 C 1.29841 * 109.47946 * 0.42563 * 15 14 13 17 17 N 1.34692 * 126.46608 * 89.99960 * 13 12 2 18 18 C 1.46262 * 128.84460 * 0.12885 * 17 13 12 19 19 C 1.53313 * 108.72883 * 162.90598 * 18 17 13 20 20 C 1.53148 * 109.58230 * 50.28876 * 19 18 17 21 21 C 1.50804 * 128.52627 * 179.86283 * 16 15 14 22 22 H 1.09005 * 109.46528 * 183.95480 * 1 2 3 23 23 H 1.09000 * 109.46785 * 303.95569 * 1 2 3 24 24 H 1.08997 * 109.47044 * 63.96124 * 1 2 3 25 25 H 1.08998 * 109.47407 * 186.04713 * 3 2 1 26 26 H 1.09007 * 109.46608 * 306.04149 * 3 2 1 27 27 H 0.96994 * 119.99598 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47043 * 53.95437 * 12 2 1 29 29 H 1.09001 * 109.47354 * 173.95499 * 12 2 1 30 30 H 1.08998 * 109.59110 * 282.67639 * 18 17 13 31 31 H 1.08998 * 109.59440 * 43.13432 * 18 17 13 32 32 H 1.09001 * 109.45322 * 170.32019 * 19 18 17 33 33 H 1.08997 * 109.45494 * 290.25637 * 19 18 17 34 34 H 1.09001 * 109.49898 * 50.51546 * 20 19 18 35 35 H 1.09000 * 109.49937 * 170.61563 * 20 19 18 36 36 H 1.08999 * 109.73113 * 44.41038 * 21 16 15 37 37 H 1.08994 * 109.72554 * 283.72678 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5113 2.0487 6 6 2.0268 3.3496 1.5284 7 7 2.7120 4.0019 0.6148 8 14 1.5829 4.1870 3.1381 9 1 0.8156 3.2444 3.9913 10 1 2.8248 4.5946 3.8429 11 1 0.7550 5.3878 2.8595 12 6 1.9955 -0.7660 -1.1375 13 6 1.6370 -2.2205 -0.9727 14 7 2.3524 -3.1340 -0.3681 15 7 1.7393 -4.2671 -0.4125 16 6 0.6175 -4.1276 -1.0512 17 7 0.5224 -2.8265 -1.4251 18 6 -0.5952 -2.2515 -2.1731 19 6 -1.3934 -3.3903 -2.8184 20 6 -1.7188 -4.4513 -1.7631 21 6 -0.4274 -5.1722 -1.3535 22 1 -0.3632 -1.0253 0.0709 23 1 -0.3633 0.5740 0.8524 24 1 -0.3633 0.4511 -0.9233 25 1 3.0797 1.3445 -0.1083 26 1 1.5611 1.9273 -0.8310 27 1 2.9859 4.9182 0.7765 28 1 1.5612 -0.3873 -2.0628 29 1 3.0798 -0.6612 -1.1755 30 1 -1.2396 -1.6920 -1.4949 31 1 -0.2131 -1.5878 -2.9486 32 1 -2.3206 -2.9943 -3.2328 33 1 -0.8030 -3.8409 -3.6161 34 1 -2.1607 -3.9721 -0.8895 35 1 -2.4225 -5.1731 -2.1777 36 1 -0.6097 -5.7779 -0.4659 37 1 -0.0862 -5.8083 -2.1702 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488236605.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:46 Heat of formation + Delta-G solvation = 77.468328 kcal Electronic energy + Delta-G solvation = -18601.514401 eV Core-core repulsion = 15801.030511 eV Total energy + Delta-G solvation = -2800.483890 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.09117 -37.32351 -36.82560 -33.64958 -32.52031 -30.91095 -29.76737 -27.42883 -26.73991 -24.75955 -23.99098 -22.72083 -21.31710 -20.19313 -19.50535 -16.96398 -16.56897 -16.24720 -15.15938 -14.96167 -14.57133 -14.44345 -14.36089 -13.97190 -13.89251 -13.69671 -12.61187 -12.46246 -12.04876 -11.69226 -11.52142 -11.50390 -11.37701 -11.24908 -11.04658 -10.93489 -10.71313 -10.56066 -10.04744 -9.99278 -9.90174 -9.30533 -8.76959 -8.47839 -7.42016 -6.07160 -4.08477 2.02151 2.60701 3.13761 3.29505 3.37376 3.42570 4.08560 4.27891 4.32368 4.40222 4.40352 4.68201 4.90369 4.96363 5.02447 5.09497 5.26090 5.29901 5.34563 5.40814 5.49182 5.56184 5.78150 5.82065 5.93427 5.98686 6.08649 6.22130 6.41255 6.55025 7.05391 7.15100 7.18995 7.71374 7.95821 8.06478 8.42715 8.98522 9.04455 9.55938 11.03818 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.037576 B = 0.004908 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.977609 B = 5703.581098 C = 5884.773026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.530 5.530 3 C 0.194 3.806 4 C -0.508 4.508 5 H 0.064 0.936 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.285 1.285 12 C 0.138 3.862 13 C 0.208 3.792 14 N -0.288 5.288 15 N -0.295 5.295 16 C 0.160 3.840 17 N -0.469 5.469 18 C 0.098 3.902 19 C -0.134 4.134 20 C -0.126 4.126 21 C -0.029 4.029 22 H 0.039 0.961 23 H 0.080 0.920 24 H 0.013 0.987 25 H 0.036 0.964 26 H -0.006 1.006 27 H 0.261 0.739 28 H 0.041 0.959 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.972 -13.985 -9.373 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.255 5.255 3 C 0.070 3.930 4 C -0.546 4.546 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.211 1.211 12 C 0.008 3.992 13 C -0.060 4.060 14 N -0.127 5.127 15 N -0.135 5.135 16 C -0.108 4.108 17 N -0.161 5.161 18 C -0.025 4.025 19 C -0.171 4.171 20 C -0.164 4.164 21 C -0.069 4.069 22 H 0.057 0.943 23 H 0.099 0.901 24 H 0.031 0.969 25 H 0.054 0.946 26 H 0.012 0.988 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.575 -14.646 -8.211 19.329 hybrid contribution -1.484 1.666 -0.606 2.312 sum -11.060 -12.980 -8.818 19.197 Atomic orbital electron populations 1.22378 0.89073 0.99084 1.00929 1.62086 1.06811 1.18164 1.38486 1.19793 0.95807 0.80383 0.97042 1.21149 1.35044 0.96847 1.01576 0.91769 1.24971 0.95183 0.97295 0.97043 1.69959 1.38266 1.11458 1.34061 0.86423 0.78236 0.79209 0.83469 1.19660 1.20880 1.21122 1.20424 1.02263 0.83012 0.93548 1.24779 0.84763 0.98419 0.97996 1.74509 1.24729 0.95097 1.18408 1.74037 1.04195 1.17949 1.17289 1.24556 0.98837 0.85572 1.01785 1.45991 1.17988 1.09285 1.42866 1.22123 0.87044 0.97095 0.96222 1.21921 1.00811 0.95728 0.98688 1.21706 0.97098 0.98306 0.99326 1.20143 0.89933 0.93622 1.03190 0.94280 0.90110 0.96871 0.94617 0.98790 0.92893 0.94108 0.87677 0.88816 0.88848 0.89061 0.90627 0.90919 0.89825 0.88491 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 8.15 60.07 0.49 1.13 16 2 N -0.53 -11.54 4.74 -245.82 -1.17 -12.70 16 3 C 0.19 4.96 4.72 -4.98 -0.02 4.94 16 4 C -0.51 -14.16 8.46 -34.44 -0.29 -14.45 16 5 H 0.06 1.80 7.12 -52.48 -0.37 1.43 16 6 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -26.31 13.29 55.43 0.74 -25.58 16 8 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.14 2.55 5.37 -4.98 -0.03 2.52 16 13 C 0.21 3.78 6.68 -155.45 -1.04 2.74 16 14 N -0.29 -5.96 12.23 32.70 0.40 -5.56 16 15 N -0.29 -5.57 12.21 32.76 0.40 -5.17 16 16 C 0.16 2.36 7.75 -155.30 -1.20 1.15 16 17 N -0.47 -6.81 2.72 -110.86 -0.30 -7.11 16 18 C 0.10 1.00 5.90 -4.01 -0.02 0.97 16 19 C -0.13 -0.91 5.94 -26.49 -0.16 -1.07 16 20 C -0.13 -0.86 5.96 -26.41 -0.16 -1.02 16 21 C -0.03 -0.27 6.34 -27.59 -0.17 -0.45 16 22 H 0.04 0.67 5.34 -51.93 -0.28 0.39 16 23 H 0.08 1.66 6.76 -51.93 -0.35 1.31 16 24 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.04 0.97 7.93 -51.93 -0.41 0.56 16 26 H -0.01 -0.15 8.12 -51.93 -0.42 -0.57 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.04 0.66 7.74 -51.93 -0.40 0.26 16 29 H 0.11 1.98 7.93 -51.93 -0.41 1.56 16 30 H 0.09 0.95 6.33 -51.93 -0.33 0.62 16 31 H 0.09 0.87 7.85 -51.93 -0.41 0.47 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.51 8.12 -51.93 -0.42 0.09 16 34 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 297.12 15.07 4.48 4.48 Total: -1.00 -33.63 297.12 -8.66 -42.28 By element: Atomic # 1 Polarization: 0.31 SS G_CDS: -5.48 Total: -5.16 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.70 Total: -2.04 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: 0.07 Total: -56.11 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.63 -8.66 -42.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488236605.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.751 kcal (2) G-P(sol) polarization free energy of solvation -33.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds