Wall clock time and date at job start Sun Mar 29 2020 23:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31325 * 1 3 3 Si 1.86802 * 120.00033 * 2 1 4 4 H 1.48495 * 109.47396 * 239.99912 * 3 2 1 5 5 H 1.48498 * 109.47208 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46758 * 120.00067 * 3 2 1 7 7 C 1.39125 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00120 * 180.02562 * 7 2 1 9 9 N 1.36718 * 119.99608 * 359.97438 * 7 2 1 10 10 C 1.34782 * 119.99809 * 180.02562 * 9 7 2 11 11 O 1.21767 * 119.99474 * 359.97438 * 10 9 7 12 12 C 1.46217 * 120.00158 * 180.27744 * 10 9 7 13 13 C 1.34980 * 120.00453 * 172.94007 * 12 10 9 14 14 C 1.47150 * 119.99718 * 349.03955 * 13 12 10 15 15 C 1.39895 * 120.16884 * 136.38396 * 14 13 12 16 16 C 1.37861 * 119.85274 * 179.97438 * 15 14 13 17 17 C 1.38410 * 120.18691 * 0.02562 * 16 15 14 18 18 C 1.38508 * 120.33978 * 359.97438 * 17 16 15 19 19 Cl 1.73600 * 119.92728 * 180.02562 * 18 17 16 20 20 C 1.38022 * 120.14435 * 359.78087 * 18 17 16 21 21 H 0.96998 * 119.99703 * 359.97438 * 1 2 3 22 22 H 0.96995 * 120.00196 * 0.02562 * 9 7 2 23 23 H 1.08004 * 120.00013 * 352.93873 * 12 10 9 24 24 H 1.07999 * 120.00491 * 169.04113 * 13 12 10 25 25 H 1.08002 * 120.07063 * 359.96477 * 15 14 13 26 26 H 1.07996 * 119.90788 * 180.02562 * 16 15 14 27 27 H 1.07997 * 119.83204 * 179.97438 * 17 16 15 28 28 H 1.08005 * 120.08938 * 180.25984 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 3.1010 1.6965 -1.2124 5 1 1.2823 2.7465 0.0006 6 1 3.1010 1.6963 1.2125 7 6 2.0089 -1.2049 -0.0005 8 1 3.0889 -1.2049 -0.0001 9 7 1.3252 -2.3888 -0.0005 10 6 1.9991 -3.5561 -0.0005 11 8 3.2167 -3.5560 -0.0010 12 6 1.2680 -4.8224 -0.0067 13 6 1.9357 -5.9866 -0.1504 14 6 3.3547 -5.9776 -0.5401 15 6 4.2660 -6.8212 0.1041 16 6 5.5938 -6.8078 -0.2665 17 6 6.0268 -5.9623 -1.2731 18 6 5.1313 -5.1239 -1.9162 19 17 5.6861 -4.0682 -3.1777 20 6 3.7980 -5.1295 -1.5596 21 1 -0.4849 0.8401 0.0004 22 1 0.3553 -2.3888 -0.0005 23 1 0.1936 -4.8262 0.1038 24 1 1.4286 -6.9247 0.0206 25 1 3.9301 -7.4813 0.8902 26 1 6.2980 -7.4590 0.2299 27 1 7.0684 -5.9562 -1.5587 28 1 3.0997 -4.4784 -2.0645 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491402003.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:41 Heat of formation + Delta-G solvation = -15.709522 kcal Electronic energy + Delta-G solvation = -15490.923083 eV Core-core repulsion = 12725.430260 eV Total energy + Delta-G solvation = -2765.492823 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.045 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.70031 -39.42111 -37.34846 -36.13802 -34.40697 -33.32819 -31.53107 -30.55211 -27.31256 -24.68596 -23.33232 -22.45988 -20.41373 -19.55964 -18.38180 -17.34272 -16.63805 -16.33774 -16.10613 -15.73272 -15.24159 -14.92473 -14.49132 -14.31019 -14.05958 -13.52001 -13.33504 -12.96647 -12.55470 -12.47626 -12.30876 -12.26719 -12.15015 -11.72378 -11.53255 -10.77809 -10.31373 -10.06271 -9.43897 -8.95296 -8.53517 -5.94474 -0.12085 0.46273 1.01258 1.30191 1.38312 1.43058 1.49043 2.26563 2.52268 2.90401 3.32425 3.36378 3.86555 4.03262 4.21337 4.35785 4.42721 4.58445 4.70132 4.83658 5.06174 5.26132 5.32679 5.36921 5.44950 5.56899 5.72271 5.99799 6.07358 6.57589 7.09586 7.54149 8.14168 8.63227 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.022909 B = 0.006876 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.948374 B = 4070.869182 C = 4915.621232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.010 4.010 3 Si 0.990 3.010 4 H -0.273 1.273 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.326 4.326 8 H 0.080 0.920 9 N -0.557 5.557 10 C 0.445 3.555 11 O -0.613 6.613 12 C -0.192 4.192 13 C -0.052 4.052 14 C -0.062 4.062 15 C -0.103 4.103 16 C -0.122 4.122 17 C -0.117 4.117 18 C -0.067 4.067 19 Cl -0.093 7.093 20 C -0.038 4.038 21 H 0.280 0.720 22 H 0.395 0.605 23 H 0.151 0.849 24 H 0.179 0.821 25 H 0.157 0.843 26 H 0.164 0.836 27 H 0.144 0.856 28 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.820 -13.244 -1.162 14.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.211 4.211 3 Si 0.814 3.186 4 H -0.199 1.199 5 H -0.192 1.192 6 H -0.196 1.196 7 C -0.456 4.456 8 H 0.098 0.902 9 N -0.191 5.191 10 C 0.236 3.764 11 O -0.503 6.503 12 C -0.213 4.213 13 C -0.072 4.072 14 C -0.062 4.062 15 C -0.121 4.121 16 C -0.140 4.140 17 C -0.135 4.135 18 C -0.093 4.093 19 Cl -0.064 7.064 20 C -0.057 4.057 21 H 0.090 0.910 22 H 0.229 0.771 23 H 0.168 0.832 24 H 0.196 0.804 25 H 0.174 0.826 26 H 0.181 0.819 27 H 0.162 0.838 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.487 -12.922 -1.273 14.096 hybrid contribution -0.311 1.536 -0.246 1.586 sum 5.175 -11.386 -1.519 12.599 Atomic orbital electron populations 1.69619 1.06913 1.29643 1.49077 1.26070 0.96478 1.02458 0.96121 0.85030 0.77887 0.76747 0.78982 1.19866 1.19203 1.19607 1.19625 0.92809 0.84079 1.49118 0.90231 1.41978 1.09368 1.05070 1.62652 1.18854 0.88087 0.85234 0.84259 1.90693 1.14612 1.87475 1.57472 1.23188 1.00853 0.91763 1.05449 1.22544 0.91687 0.98417 0.94578 1.19081 0.95146 0.96343 0.95631 1.21643 0.93099 0.98181 0.99212 1.21278 0.96357 0.99442 0.96923 1.21291 0.99504 0.95841 0.96907 1.20900 0.94711 0.97742 0.95972 1.98318 1.89768 1.66464 1.51872 1.20910 0.93901 0.94505 0.96414 0.91028 0.77070 0.83164 0.80427 0.82565 0.81890 0.83806 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.26 13.05 21.69 0.28 -48.97 15 2 C -0.01 -0.56 5.50 84.98 0.47 -0.09 15 3 Si 0.99 43.31 29.55 68.60 2.03 45.34 15 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 15 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 7 C -0.33 -18.61 9.68 84.14 0.81 -17.80 15 8 H 0.08 4.86 7.15 -2.91 -0.02 4.84 15 9 N -0.56 -28.89 5.27 -311.04 -1.64 -30.53 15 10 C 0.44 21.24 6.74 86.31 0.58 21.82 15 11 O -0.61 -32.79 11.72 -4.56 -0.05 -32.85 15 12 C -0.19 -6.68 9.91 23.59 0.23 -6.45 15 13 C -0.05 -1.50 9.81 23.86 0.23 -1.27 15 14 C -0.06 -2.05 4.53 -20.15 -0.09 -2.14 15 15 C -0.10 -2.75 9.80 22.58 0.22 -2.53 15 16 C -0.12 -3.03 10.03 22.22 0.22 -2.81 15 17 C -0.12 -3.41 9.82 22.38 0.22 -3.19 15 18 C -0.07 -2.41 6.31 22.28 0.14 -2.27 15 19 Cl -0.09 -3.28 28.95 -2.72 -0.08 -3.36 15 20 C -0.04 -1.48 6.38 22.61 0.14 -1.34 15 21 H 0.28 14.14 8.31 -92.71 -0.77 13.37 15 22 H 0.40 19.55 7.87 -92.71 -0.73 18.82 15 23 H 0.15 4.23 8.06 -2.91 -0.02 4.21 15 24 H 0.18 3.27 8.06 -2.91 -0.02 3.25 15 25 H 0.16 2.99 8.06 -2.91 -0.02 2.96 15 26 H 0.16 2.70 8.06 -2.91 -0.02 2.68 15 27 H 0.14 3.46 8.06 -2.91 -0.02 3.43 15 28 H 0.09 4.13 7.03 -2.91 -0.02 4.11 15 Total: -1.00 -67.44 269.02 4.19 -63.25 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.46 Total: 25.17 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 3.19 Total: -18.05 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -1.36 Total: -79.50 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -0.05 Total: -32.85 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 17 Polarization: -3.28 SS G_CDS: -0.08 Total: -3.36 kcal Total: -67.44 4.19 -63.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491402003.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.537 kcal (2) G-P(sol) polarization free energy of solvation -67.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds