Wall clock time and date at job start Sun Mar 29 2020 22:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46880 * 183.92956 * 3 2 1 5 5 C 1.36940 * 120.00287 * 264.22785 * 4 3 2 6 6 H 1.08001 * 119.99881 * 196.86420 * 5 4 3 7 7 C 1.38810 * 119.99491 * 16.86647 * 5 4 3 8 8 N 1.31612 * 120.00621 * 22.15811 * 7 5 4 9 9 Si 1.86798 * 119.99523 * 202.15686 * 7 5 4 10 10 H 1.48498 * 109.47138 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46956 * 119.99920 * 9 7 5 12 12 H 1.48500 * 109.47236 * 239.99933 * 9 7 5 13 13 C 1.46509 * 119.99845 * 84.23036 * 4 3 2 14 14 C 1.53001 * 109.46999 * 269.99768 * 13 4 3 15 15 N 1.46894 * 109.47050 * 179.97438 * 14 13 4 16 16 C 1.46849 * 111.00189 * 190.00041 * 15 14 13 17 17 C 1.53038 * 109.51879 * 185.84819 * 16 15 14 18 18 C 1.53117 * 109.27594 * 300.81023 * 17 16 15 19 19 C 1.52999 * 109.57275 * 177.59972 * 18 17 16 20 20 C 1.53117 * 109.15718 * 57.66598 * 18 17 16 21 21 C 1.46846 * 111.00288 * 314.21209 * 15 14 13 22 22 H 4.40636 * 5.51494 * 179.97438 * 4 1 2 23 23 H 1.08993 * 109.47516 * 63.93245 * 3 2 1 24 24 H 1.08997 * 109.47070 * 303.92967 * 3 2 1 25 25 H 0.97001 * 120.00763 * 179.97438 * 8 7 5 26 26 H 1.08992 * 109.46978 * 149.99963 * 13 4 3 27 27 H 1.08998 * 109.47128 * 29.99841 * 13 4 3 28 28 H 1.09003 * 109.46753 * 59.99893 * 14 13 4 29 29 H 1.08997 * 109.47543 * 300.00456 * 14 13 4 30 30 H 1.09006 * 109.46004 * 305.85853 * 16 15 14 31 31 H 1.09000 * 109.46310 * 65.83545 * 16 15 14 32 32 H 1.09007 * 109.49805 * 60.75431 * 17 16 15 33 33 H 1.08995 * 109.50666 * 180.87273 * 17 16 15 34 34 H 1.09005 * 109.52898 * 297.75737 * 18 17 16 35 35 H 1.08997 * 109.47392 * 300.29077 * 19 18 17 36 36 H 1.09000 * 109.47275 * 60.29645 * 19 18 17 37 37 H 1.09001 * 109.47265 * 180.29022 * 19 18 17 38 38 H 1.09001 * 109.50299 * 182.40334 * 20 18 17 39 39 H 1.08999 * 109.53063 * 62.30055 * 20 18 17 40 40 H 1.08990 * 109.46163 * 294.17730 * 21 15 14 41 41 H 1.08999 * 109.45790 * 54.15984 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3789 0.0947 5 6 3.4740 2.0643 -1.0409 6 1 4.0784 2.9567 -0.9723 7 6 3.0421 1.6120 -2.2802 8 7 1.9890 0.8272 -2.3640 9 14 3.9559 2.1174 -3.8291 10 1 5.0966 2.9962 -3.4664 11 1 4.4653 0.9060 -4.5208 12 1 3.0325 2.8512 -4.7314 13 6 3.2572 2.0238 1.4043 14 6 1.9469 2.7349 1.7483 15 7 2.0706 3.3811 3.0617 16 6 0.7684 3.8700 3.5324 17 6 0.9575 4.6620 4.8282 18 6 1.5962 3.7569 5.8852 19 6 1.8433 4.5584 7.1648 20 6 2.9278 3.2224 5.3509 21 6 2.6817 2.4722 4.0399 22 1 -1.0502 -0.0004 -0.0002 23 1 3.0096 -0.4507 -0.9230 24 1 3.0095 -0.5728 0.8527 25 1 1.6869 0.5114 -3.2300 26 1 4.0686 2.7510 1.3761 27 1 3.4712 1.2699 2.1619 28 1 1.1354 2.0077 1.7765 29 1 1.7329 3.4888 0.9907 30 1 0.3269 4.5158 2.7732 31 1 0.1077 3.0231 3.7176 32 1 1.6072 5.5170 4.6405 33 1 -0.0109 5.0117 5.1857 34 1 0.9291 2.9223 6.1013 35 1 2.5086 5.3940 6.9473 36 1 0.8948 4.9383 7.5444 37 1 2.3026 3.9139 7.9143 38 1 3.3670 2.5434 6.0818 39 1 3.6088 4.0545 5.1718 40 1 2.0121 1.6318 4.2225 41 1 3.6300 2.1030 3.6495 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491755003.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:52 Heat of formation + Delta-G solvation = 58.172268 kcal Electronic energy + Delta-G solvation = -18841.791031 eV Core-core repulsion = 16144.010745 eV Total energy + Delta-G solvation = -2697.780287 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.22605 -38.05238 -35.67684 -33.51114 -33.07642 -31.79716 -30.28679 -28.10605 -27.64001 -24.85218 -24.22994 -22.95090 -21.50309 -20.51179 -19.36853 -18.35063 -17.12124 -16.62260 -16.13309 -15.80658 -15.51156 -15.23225 -15.08081 -14.90682 -14.65979 -14.21610 -13.61512 -13.29338 -13.20815 -13.06228 -13.01459 -12.74357 -12.63979 -12.38809 -12.18259 -12.13153 -11.99723 -11.70616 -11.48772 -11.16231 -11.07532 -10.76834 -10.72250 -10.32629 -9.21594 -8.96548 -7.83991 -5.25448 1.47072 1.50576 1.60177 2.29107 2.50217 2.59218 2.99143 3.28674 3.82099 3.87387 3.93769 3.96451 4.06300 4.26137 4.27982 4.39186 4.51057 4.57961 4.62345 4.71132 4.81024 4.85180 4.87624 4.89091 4.96963 5.05361 5.13349 5.18470 5.22183 5.29668 5.30320 5.32130 5.40379 5.58532 5.61927 5.67852 6.15075 6.26033 6.31328 7.09806 7.32353 7.82190 8.24287 9.18035 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.032009 B = 0.005131 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.541732 B = 5455.366266 C = 5768.316151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 C -0.124 4.124 3 C 0.268 3.732 4 N -0.599 5.599 5 C -0.268 4.268 6 H 0.074 0.926 7 C -0.045 4.045 8 N -0.915 5.915 9 Si 0.961 3.039 10 H -0.268 1.268 11 H -0.290 1.290 12 H -0.299 1.299 13 C 0.152 3.848 14 C 0.057 3.943 15 N -0.539 5.539 16 C 0.053 3.947 17 C -0.102 4.102 18 C -0.094 4.094 19 C -0.139 4.139 20 C -0.105 4.105 21 C 0.047 3.953 22 H 0.218 0.782 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.246 0.754 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.008 0.992 29 H 0.039 0.961 30 H 0.060 0.940 31 H 0.020 0.980 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.021 0.979 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.038 3.905 16.635 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 C -0.127 4.127 3 C 0.143 3.857 4 N -0.319 5.319 5 C -0.398 4.398 6 H 0.092 0.908 7 C -0.241 4.241 8 N -0.560 5.560 9 Si 0.790 3.210 10 H -0.193 1.193 11 H -0.216 1.216 12 H -0.227 1.227 13 C 0.026 3.974 14 C -0.074 4.074 15 N -0.265 5.265 16 C -0.075 4.075 17 C -0.140 4.140 18 C -0.113 4.113 19 C -0.196 4.196 20 C -0.142 4.142 21 C -0.081 4.081 22 H 0.234 0.766 23 H 0.090 0.910 24 H 0.081 0.919 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.027 0.973 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.039 0.961 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.281 4.260 16.445 16.990 hybrid contribution -0.945 -0.495 -1.504 1.844 sum -0.664 3.765 14.941 15.422 Atomic orbital electron populations 1.24930 0.96329 1.03726 1.07085 1.24692 0.96093 0.97117 0.94782 1.17791 0.82807 0.85740 0.99400 1.44406 1.74702 1.10338 1.02479 1.19523 1.25610 1.09642 0.84999 0.90799 1.25548 0.97223 1.01025 1.00315 1.70291 1.22894 1.39496 1.23336 0.85315 0.78407 0.77220 0.80090 1.19277 1.21626 1.22716 1.21114 0.94763 0.95362 0.86126 1.22525 0.99237 0.95913 0.89694 1.62051 1.23624 1.38521 1.02272 1.22120 0.89533 0.97993 0.97866 1.21608 1.01388 0.98115 0.92897 1.21188 0.96631 0.98036 0.95402 1.21752 1.01929 0.99930 0.96017 1.21638 0.97558 1.00245 0.94786 1.22263 0.99279 0.93539 0.92994 0.76569 0.91042 0.91872 0.94404 0.92648 0.91896 0.97325 0.94191 0.92152 0.96146 0.91391 0.90391 0.91992 0.92502 0.92155 0.91946 0.90085 0.91332 0.96113 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.89 19.25 74.32 1.43 -12.46 16 2 C -0.12 -6.11 10.54 31.12 0.33 -5.79 16 3 C 0.27 12.88 5.45 84.57 0.46 13.34 16 4 N -0.60 -29.49 2.50 -712.56 -1.78 -31.27 16 5 C -0.27 -14.52 9.66 84.03 0.81 -13.70 16 6 H 0.07 3.96 7.90 -2.91 -0.02 3.93 16 7 C -0.04 -2.47 4.85 84.86 0.41 -2.06 16 8 N -0.92 -52.94 9.50 21.65 0.21 -52.73 16 9 Si 0.96 44.80 29.61 68.60 2.03 46.83 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 12 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 13 C 0.15 6.24 4.95 86.38 0.43 6.67 16 14 C 0.06 2.29 5.45 86.30 0.47 2.76 16 15 N -0.54 -17.58 4.81 -896.37 -4.31 -21.88 16 16 C 0.05 1.54 5.42 86.33 0.47 2.00 16 17 C -0.10 -2.24 5.38 30.65 0.16 -2.08 16 18 C -0.09 -1.83 2.79 -10.72 -0.03 -1.86 16 19 C -0.14 -2.07 9.20 71.98 0.66 -1.41 16 20 C -0.10 -2.22 5.38 30.65 0.16 -2.05 16 21 C 0.05 1.29 4.85 86.33 0.42 1.71 16 22 H 0.22 8.24 7.80 -4.41 -0.03 8.20 16 23 H 0.07 3.79 6.42 -2.39 -0.02 3.77 16 24 H 0.06 2.61 7.98 -2.39 -0.02 2.59 16 25 H 0.25 14.06 8.31 -92.71 -0.77 13.28 16 26 H 0.06 2.26 8.02 -2.39 -0.02 2.24 16 27 H 0.06 2.29 6.01 -2.39 -0.01 2.28 16 28 H 0.01 0.38 7.14 -2.39 -0.02 0.36 16 29 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.06 1.84 8.12 -2.38 -0.02 1.82 16 31 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 39 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.08 2.23 5.81 -2.39 -0.01 2.21 16 Total: -1.00 -61.60 324.00 3.30 -58.30 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.96 Total: 15.67 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 6.19 Total: -14.92 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -5.89 Total: -105.88 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -61.60 3.30 -58.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491755003.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.471 kcal (2) G-P(sol) polarization free energy of solvation -61.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds