Wall clock time and date at job start Sun Mar 29 2020 22:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46924 * 2 1 4 4 C 1.52997 * 109.47107 * 119.99654 * 2 1 3 5 5 C 1.53004 * 115.55322 * 280.35872 * 4 2 1 6 6 C 1.53001 * 117.51760 * 134.65807 * 4 2 1 7 7 C 1.53003 * 117.49725 * 66.02859 * 4 2 1 8 8 H 1.08994 * 117.49887 * 215.02325 * 7 4 2 9 9 N 1.46900 * 117.49811 * 0.02562 * 7 4 2 10 10 C 1.46898 * 111.00031 * 205.33808 * 9 7 4 11 11 C 1.52994 * 109.47393 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.47305 * 305.00900 * 11 10 9 13 13 C 1.47201 * 109.46937 * 65.00288 * 11 10 9 14 14 N 5.97489 * 87.33481 * 201.76994 * 2 1 3 15 15 C 1.52998 * 109.47340 * 184.99979 * 11 10 9 16 16 C 1.50700 * 109.46985 * 175.00039 * 15 11 10 17 17 H 1.08006 * 120.00460 * 0.02562 * 16 15 11 18 18 C 1.37879 * 120.00197 * 180.02562 * 16 15 11 19 19 N 1.31516 * 119.99557 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00463 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47323 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47337 * 300.00242 * 20 18 16 23 23 H 1.48495 * 109.47067 * 60.00179 * 20 18 16 24 24 H 1.08997 * 109.46999 * 299.99811 * 1 2 3 25 25 H 1.08998 * 109.47059 * 60.00632 * 1 2 3 26 26 H 1.08999 * 109.46521 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46999 * 240.00189 * 2 1 3 28 28 H 1.09001 * 109.46958 * 173.84868 * 3 2 1 29 29 H 1.09003 * 109.47319 * 293.84852 * 3 2 1 30 30 H 1.09006 * 109.46862 * 53.84522 * 3 2 1 31 31 H 1.08999 * 109.46908 * 205.67178 * 5 4 2 32 32 H 1.08998 * 109.46804 * 325.66949 * 5 4 2 33 33 H 1.08997 * 109.46563 * 85.66989 * 5 4 2 34 34 H 1.09001 * 117.50223 * 145.03134 * 6 4 2 35 35 H 1.09006 * 117.49841 * 0.02562 * 6 4 2 36 36 H 1.00899 * 111.00163 * 81.38899 * 9 7 4 37 37 H 1.09003 * 109.46715 * 60.00142 * 10 9 7 38 38 H 1.08999 * 109.47272 * 300.00384 * 10 9 7 39 39 H 1.09003 * 109.46873 * 55.00637 * 15 11 10 40 40 H 1.08996 * 109.47294 * 295.00132 * 15 11 10 41 41 H 0.97001 * 120.00459 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0260 0.1024 2.5387 6 6 3.1748 -1.7313 1.0686 7 6 1.7556 -2.2200 1.3653 8 1 1.5582 -2.6193 2.3600 9 7 1.0143 -2.8566 0.2684 10 6 0.3088 -4.0569 0.7367 11 6 -0.4505 -4.6905 -0.4307 12 1 -1.1084 -3.9478 -0.8820 13 6 0.5099 -5.1713 -1.4373 14 7 1.2522 -5.5428 -2.2136 15 6 -1.2842 -5.8667 0.0814 16 6 -2.1254 -6.4133 -1.0432 17 1 -2.0706 -5.9668 -2.0251 18 6 -2.9652 -7.4836 -0.8186 19 7 -3.0324 -8.0270 0.3771 20 14 -4.0074 -8.1616 -2.2126 21 1 -4.8168 -9.3032 -1.7156 22 1 -4.9106 -7.0970 -2.7186 23 1 -3.1230 -8.6242 -3.3121 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1244 1.4445 0.1101 29 1 1.7693 1.9236 -0.9399 30 1 1.5894 1.9872 0.8298 31 1 2.7818 -0.2820 3.2235 32 1 2.2429 1.1450 2.3062 33 1 1.0433 0.0308 3.0047 34 1 3.9114 -1.8092 1.8683 35 1 3.5586 -1.8820 0.0595 36 1 1.6269 -3.0753 -0.5030 37 1 -0.3961 -3.7811 1.5211 38 1 1.0306 -4.7717 1.1319 39 1 -1.9332 -5.5277 0.8889 40 1 -0.6209 -6.6482 0.4519 41 1 -2.4909 -7.6752 1.1009 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515005158.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:28 Heat of formation + Delta-G solvation = 19.701988 kcal Electronic energy + Delta-G solvation = -18258.142510 eV Core-core repulsion = 15558.694027 eV Total energy + Delta-G solvation = -2699.448483 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.39810 -37.11493 -34.75810 -33.85634 -32.79953 -30.79530 -28.25578 -26.91463 -25.78826 -22.84616 -22.55948 -22.19916 -21.46155 -18.22419 -17.15301 -16.67123 -15.86647 -15.54114 -14.92122 -13.98959 -13.75718 -13.66272 -13.47626 -13.26594 -13.11203 -12.96781 -12.65011 -12.44289 -12.21243 -11.96715 -11.77001 -11.70764 -11.44356 -11.21125 -11.00490 -10.94300 -10.85558 -10.53580 -10.48752 -10.30004 -10.15459 -9.96271 -9.62490 -8.67454 -8.41430 -8.11431 -6.43893 -4.15100 3.42492 3.44914 3.47564 3.51145 3.63108 3.66979 4.07053 4.50564 4.62497 4.67898 4.74621 4.85730 5.03500 5.22069 5.34401 5.34724 5.42524 5.44511 5.53193 5.61868 5.68506 5.71303 5.75667 5.80347 5.87303 5.98893 6.02793 6.04595 6.05736 6.23503 6.30506 6.37816 6.47983 6.68142 7.06394 7.09355 7.23514 7.33675 8.02276 8.27534 8.38530 8.78518 9.55988 10.96894 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.032695 B = 0.004221 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.200304 B = 6631.779143 C = 6657.662253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.045 4.045 3 C -0.148 4.148 4 C -0.108 4.108 5 C -0.118 4.118 6 C -0.203 4.203 7 C 0.035 3.965 8 H 0.109 0.891 9 N -0.654 5.654 10 C 0.068 3.932 11 C 0.015 3.985 12 H 0.112 0.888 13 C 0.240 3.760 14 N -0.472 5.472 15 C 0.019 3.981 16 C -0.606 4.606 17 H 0.051 0.949 18 C 0.021 3.979 19 N -0.908 5.908 20 Si 1.066 2.934 21 H -0.282 1.282 22 H -0.286 1.286 23 H -0.288 1.288 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.340 0.660 37 H 0.092 0.908 38 H 0.036 0.964 39 H 0.031 0.969 40 H 0.015 0.985 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.812 16.877 4.576 19.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 C -0.205 4.205 4 C -0.110 4.110 5 C -0.175 4.175 6 C -0.241 4.241 7 C -0.076 4.076 8 H 0.126 0.874 9 N -0.284 5.284 10 C -0.062 4.062 11 C -0.007 4.007 12 H 0.130 0.870 13 C -0.077 4.077 14 N -0.149 5.149 15 C -0.019 4.019 16 C -0.644 4.644 17 H 0.069 0.931 18 C -0.184 4.184 19 N -0.544 5.544 20 Si 0.894 3.106 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.215 1.215 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.159 0.841 37 H 0.110 0.890 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.033 0.967 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.245 15.538 3.082 17.858 hybrid contribution 1.680 0.639 0.701 1.929 sum 9.925 16.177 3.783 19.352 Atomic orbital electron populations 1.21842 0.94337 1.04020 1.00108 1.20428 0.96399 0.94341 0.95215 1.21931 1.00601 0.96699 1.01295 1.21768 1.01376 0.90853 0.96977 1.21415 1.01628 0.99739 0.94755 1.23721 0.92251 1.05568 1.02597 1.22536 0.94066 0.95544 0.95431 0.87355 1.60307 1.31728 1.28067 1.08259 1.22141 0.97234 0.89662 0.97181 1.19154 0.92051 0.99939 0.89605 0.87016 1.29264 0.92799 0.91997 0.93647 1.81059 1.12570 1.10349 1.10954 1.19272 0.94126 0.90955 0.97589 1.21967 1.26915 1.18888 0.96667 0.93110 1.25787 0.97247 0.94190 1.01135 1.70807 1.40181 1.41834 1.01599 0.83579 0.76125 0.76470 0.74466 1.20678 1.21203 1.21503 0.93751 0.93825 0.89608 0.91555 0.93113 0.93075 0.92598 0.92927 0.91682 0.92192 0.89036 0.89003 0.84087 0.88999 0.94582 0.95131 0.96705 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.04 37.16 0.34 -1.29 16 2 C -0.05 -0.47 2.49 -90.62 -0.23 -0.70 16 3 C -0.15 -1.33 8.20 37.16 0.30 -1.02 16 4 C -0.11 -1.09 1.78 -154.51 -0.27 -1.37 16 5 C -0.12 -1.03 9.62 37.16 0.36 -0.67 16 6 C -0.20 -2.08 9.52 -26.73 -0.25 -2.33 16 7 C 0.04 0.39 5.85 -67.71 -0.40 0.00 16 8 H 0.11 1.18 7.90 -51.93 -0.41 0.77 16 9 N -0.65 -8.38 4.50 -106.73 -0.48 -8.86 16 10 C 0.07 0.97 4.97 -3.83 -0.02 0.95 16 11 C 0.01 0.26 2.42 -93.41 -0.23 0.04 16 12 H 0.11 1.98 8.14 -51.93 -0.42 1.56 16 13 C 0.24 4.85 12.98 -20.75 -0.27 4.58 16 14 N -0.47 -10.32 18.54 42.17 0.78 -9.54 16 15 C 0.02 0.44 3.74 -27.88 -0.10 0.33 16 16 C -0.61 -16.29 8.60 -34.44 -0.30 -16.59 16 17 H 0.05 1.37 7.59 -52.48 -0.40 0.98 16 18 C 0.02 0.59 5.46 -17.82 -0.10 0.49 16 19 N -0.91 -26.70 13.65 55.43 0.76 -25.95 16 20 Si 1.07 25.00 29.90 -169.99 -5.08 19.91 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.09 1.09 6.36 -51.93 -0.33 0.76 16 27 H 0.07 0.77 7.95 -51.93 -0.41 0.35 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.47 6.74 -51.93 -0.35 0.12 16 31 H 0.05 0.42 7.90 -51.93 -0.41 0.01 16 32 H 0.06 0.52 5.76 -51.93 -0.30 0.22 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.85 8.05 -51.93 -0.42 0.43 16 35 H 0.09 0.98 8.04 -51.93 -0.42 0.57 16 36 H 0.34 4.63 7.60 -39.29 -0.30 4.33 16 37 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.03 0.70 8.01 -51.93 -0.42 0.28 16 40 H 0.01 0.36 8.01 -51.93 -0.42 -0.06 16 41 H 0.27 7.74 7.22 -40.82 -0.29 7.44 16 LS Contribution 334.83 15.07 5.05 5.05 Total: -1.00 -29.25 334.83 -7.19 -36.44 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -7.05 Total: 0.53 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -1.16 Total: -17.57 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 1.06 Total: -44.35 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.08 Total: 19.91 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.25 -7.19 -36.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515005158.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.143 kcal (2) G-P(sol) polarization free energy of solvation -29.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds