Wall clock time and date at job start Sun Mar 29 2020 22:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46924 * 2 1 4 4 C 1.52997 * 109.47107 * 119.99654 * 2 1 3 5 5 C 1.53004 * 115.55322 * 280.35872 * 4 2 1 6 6 C 1.53001 * 117.51760 * 134.65807 * 4 2 1 7 7 C 1.53003 * 117.49725 * 66.02859 * 4 2 1 8 8 H 1.08994 * 117.49887 * 215.02325 * 7 4 2 9 9 N 1.46900 * 117.49811 * 0.02562 * 7 4 2 10 10 C 1.46898 * 111.00031 * 205.33808 * 9 7 4 11 11 C 1.52994 * 109.47393 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.47305 * 305.00900 * 11 10 9 13 13 C 1.47201 * 109.46937 * 65.00288 * 11 10 9 14 14 N 5.97489 * 87.33481 * 201.76994 * 2 1 3 15 15 C 1.52998 * 109.47340 * 184.99979 * 11 10 9 16 16 C 1.50700 * 109.46985 * 175.00039 * 15 11 10 17 17 H 1.08006 * 120.00460 * 0.02562 * 16 15 11 18 18 C 1.37879 * 120.00197 * 180.02562 * 16 15 11 19 19 N 1.31516 * 119.99557 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00463 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47323 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47337 * 300.00242 * 20 18 16 23 23 H 1.48495 * 109.47067 * 60.00179 * 20 18 16 24 24 H 1.08997 * 109.46999 * 299.99811 * 1 2 3 25 25 H 1.08998 * 109.47059 * 60.00632 * 1 2 3 26 26 H 1.08999 * 109.46521 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46999 * 240.00189 * 2 1 3 28 28 H 1.09001 * 109.46958 * 173.84868 * 3 2 1 29 29 H 1.09003 * 109.47319 * 293.84852 * 3 2 1 30 30 H 1.09006 * 109.46862 * 53.84522 * 3 2 1 31 31 H 1.08999 * 109.46908 * 205.67178 * 5 4 2 32 32 H 1.08998 * 109.46804 * 325.66949 * 5 4 2 33 33 H 1.08997 * 109.46563 * 85.66989 * 5 4 2 34 34 H 1.09001 * 117.50223 * 145.03134 * 6 4 2 35 35 H 1.09006 * 117.49841 * 0.02562 * 6 4 2 36 36 H 1.00899 * 111.00163 * 81.38899 * 9 7 4 37 37 H 1.09003 * 109.46715 * 60.00142 * 10 9 7 38 38 H 1.08999 * 109.47272 * 300.00384 * 10 9 7 39 39 H 1.09003 * 109.46873 * 55.00637 * 15 11 10 40 40 H 1.08996 * 109.47294 * 295.00132 * 15 11 10 41 41 H 0.97001 * 120.00459 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0260 0.1024 2.5387 6 6 3.1748 -1.7313 1.0686 7 6 1.7556 -2.2200 1.3653 8 1 1.5582 -2.6193 2.3600 9 7 1.0143 -2.8566 0.2684 10 6 0.3088 -4.0569 0.7367 11 6 -0.4505 -4.6905 -0.4307 12 1 -1.1084 -3.9478 -0.8820 13 6 0.5099 -5.1713 -1.4373 14 7 1.2522 -5.5428 -2.2136 15 6 -1.2842 -5.8667 0.0814 16 6 -2.1254 -6.4133 -1.0432 17 1 -2.0706 -5.9668 -2.0251 18 6 -2.9652 -7.4836 -0.8186 19 7 -3.0324 -8.0270 0.3771 20 14 -4.0074 -8.1616 -2.2126 21 1 -4.8168 -9.3032 -1.7156 22 1 -4.9106 -7.0970 -2.7186 23 1 -3.1230 -8.6242 -3.3121 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1244 1.4445 0.1101 29 1 1.7693 1.9236 -0.9399 30 1 1.5894 1.9872 0.8298 31 1 2.7818 -0.2820 3.2235 32 1 2.2429 1.1450 2.3062 33 1 1.0433 0.0308 3.0047 34 1 3.9114 -1.8092 1.8683 35 1 3.5586 -1.8820 0.0595 36 1 1.6269 -3.0753 -0.5030 37 1 -0.3961 -3.7811 1.5211 38 1 1.0306 -4.7717 1.1319 39 1 -1.9332 -5.5277 0.8889 40 1 -0.6209 -6.6482 0.4519 41 1 -2.4909 -7.6752 1.1009 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000515005158.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:27 Heat of formation + Delta-G solvation = 4.469561 kcal Electronic energy + Delta-G solvation = -18258.803038 eV Core-core repulsion = 15558.694027 eV Total energy + Delta-G solvation = -2700.109011 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.28734 -38.62022 -36.19481 -35.48329 -34.03561 -32.23313 -29.15219 -27.69395 -27.47415 -24.49742 -23.80551 -23.33086 -22.43122 -19.09173 -19.05323 -18.27666 -16.87306 -16.59237 -15.86846 -15.71844 -15.45553 -14.87646 -14.60307 -14.42710 -14.24853 -14.05503 -13.92252 -13.67686 -13.39951 -13.31168 -13.20115 -12.79466 -12.63064 -12.43772 -12.43153 -12.18826 -12.03344 -11.96012 -11.77978 -11.70370 -11.31882 -11.23362 -10.73522 -10.52687 -10.44706 -9.09420 -8.63753 -6.34828 1.54032 1.60042 1.79117 1.83890 1.85466 2.56217 2.78205 3.08748 3.11680 3.21550 3.81682 3.90004 4.02529 4.11323 4.18931 4.34440 4.41474 4.51504 4.58386 4.68731 4.74806 4.82427 4.88947 4.92120 4.94984 5.04350 5.05949 5.13249 5.17747 5.20741 5.31553 5.31907 5.39409 5.49044 5.68685 5.77815 5.93108 6.08613 6.20726 6.24660 6.62415 6.67122 7.42774 8.78434 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.032695 B = 0.004221 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.200304 B = 6631.779143 C = 6657.662253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.046 4.046 3 C -0.144 4.144 4 C -0.102 4.102 5 C -0.117 4.117 6 C -0.198 4.198 7 C 0.021 3.979 8 H 0.115 0.885 9 N -0.652 5.652 10 C 0.081 3.919 11 C 0.027 3.973 12 H 0.121 0.879 13 C 0.249 3.751 14 N -0.501 5.501 15 C 0.022 3.978 16 C -0.616 4.616 17 H 0.045 0.955 18 C -0.029 4.029 19 N -0.935 5.935 20 Si 1.105 2.895 21 H -0.283 1.283 22 H -0.264 1.264 23 H -0.283 1.283 24 H 0.049 0.951 25 H 0.043 0.957 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.334 0.666 37 H 0.106 0.894 38 H 0.034 0.966 39 H 0.033 0.967 40 H -0.004 1.004 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.049 18.380 4.837 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.065 4.065 3 C -0.201 4.201 4 C -0.103 4.103 5 C -0.174 4.174 6 C -0.237 4.237 7 C -0.089 4.089 8 H 0.133 0.867 9 N -0.280 5.280 10 C -0.049 4.049 11 C 0.005 3.995 12 H 0.139 0.861 13 C -0.067 4.067 14 N -0.178 5.178 15 C -0.016 4.016 16 C -0.654 4.654 17 H 0.063 0.937 18 C -0.228 4.228 19 N -0.573 5.573 20 Si 0.928 3.072 21 H -0.208 1.208 22 H -0.189 1.189 23 H -0.209 1.209 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.122 0.878 35 H 0.103 0.897 36 H 0.153 0.847 37 H 0.124 0.876 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.015 0.985 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.495 17.070 3.350 19.359 hybrid contribution 1.641 0.204 0.620 1.766 sum 10.136 17.274 3.969 20.418 Atomic orbital electron populations 1.21795 0.94823 1.02989 1.00414 1.20419 0.95940 0.95306 0.94833 1.21891 1.00854 0.95595 1.01789 1.21829 1.00652 0.90285 0.97515 1.21431 1.01969 0.99982 0.93999 1.23740 0.92082 1.05203 1.02674 1.22627 0.94832 0.96453 0.95029 0.86730 1.60299 1.32082 1.26959 1.08705 1.21961 0.97288 0.90126 0.95528 1.19073 0.91720 0.98380 0.90361 0.86124 1.29640 0.92453 0.91295 0.93308 1.81057 1.13712 1.11078 1.11978 1.19140 0.93928 0.92010 0.96566 1.22375 1.26919 1.18622 0.97468 0.93652 1.27045 0.98529 0.94878 1.02344 1.70911 1.41266 1.42874 1.02226 0.83065 0.75336 0.76533 0.72294 1.20787 1.18934 1.20945 0.93154 0.93816 0.91241 0.93028 0.92702 0.92925 0.91730 0.92097 0.90804 0.92180 0.87767 0.89683 0.84740 0.87623 0.94760 0.94861 0.98542 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.04 71.98 0.65 -2.33 16 2 C -0.05 -0.90 2.49 -10.79 -0.03 -0.92 16 3 C -0.14 -2.28 8.20 71.98 0.59 -1.69 16 4 C -0.10 -1.85 1.78 -52.18 -0.09 -1.94 16 5 C -0.12 -1.73 9.62 71.98 0.69 -1.04 16 6 C -0.20 -3.72 9.52 30.60 0.29 -3.43 16 7 C 0.02 0.43 5.85 44.92 0.26 0.70 16 8 H 0.11 2.25 7.90 -2.39 -0.02 2.23 16 9 N -0.65 -15.95 4.50 -491.58 -2.21 -18.17 16 10 C 0.08 2.24 4.97 86.30 0.43 2.67 16 11 C 0.03 0.95 2.42 -12.60 -0.03 0.91 16 12 H 0.12 4.14 8.14 -2.38 -0.02 4.12 16 13 C 0.25 9.99 12.98 89.44 1.16 11.15 16 14 N -0.50 -21.78 18.54 20.01 0.37 -21.41 16 15 C 0.02 1.02 3.74 29.85 0.11 1.13 16 16 C -0.62 -32.99 8.60 25.60 0.22 -32.77 16 17 H 0.05 2.43 7.59 -2.91 -0.02 2.41 16 18 C -0.03 -1.62 5.46 84.66 0.46 -1.16 16 19 N -0.94 -55.33 13.65 21.45 0.29 -55.03 16 20 Si 1.10 49.84 29.90 68.60 2.05 51.89 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 22 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 24 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 1.68 6.36 -2.39 -0.02 1.67 16 27 H 0.05 1.15 7.95 -2.39 -0.02 1.13 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.91 6.74 -2.38 -0.02 0.90 16 31 H 0.06 0.81 7.90 -2.39 -0.02 0.79 16 32 H 0.07 0.97 5.76 -2.39 -0.01 0.96 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.10 1.69 8.05 -2.39 -0.02 1.67 16 35 H 0.08 1.72 8.04 -2.38 -0.02 1.71 16 36 H 0.33 8.85 7.60 -89.69 -0.68 8.17 16 37 H 0.11 2.66 8.14 -2.39 -0.02 2.65 16 38 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.03 1.51 8.01 -2.39 -0.02 1.49 16 40 H 0.00 -0.19 8.01 -2.39 -0.02 -0.20 16 41 H 0.26 15.27 7.22 -92.71 -0.67 14.60 16 Total: -1.00 -61.53 334.83 5.64 -55.89 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.41 Total: 15.55 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: 4.72 Total: -28.72 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -1.55 Total: -94.61 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 2.05 Total: 51.89 kcal Total: -61.53 5.64 -55.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515005158.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.363 kcal (2) G-P(sol) polarization free energy of solvation -61.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds