Wall clock time and date at job start Sun Mar 29 2020 22:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47009 * 2 1 4 4 C 1.53000 * 109.47226 * 119.99909 * 2 1 3 5 5 C 1.53004 * 115.56252 * 34.31069 * 4 2 1 6 6 C 1.53005 * 117.49974 * 248.62243 * 4 2 1 7 7 C 1.53005 * 60.00119 * 252.51168 * 6 4 2 8 8 H 1.09000 * 117.49892 * 107.50988 * 7 6 4 9 9 N 1.46895 * 117.49925 * 252.51303 * 7 6 4 10 10 C 1.46903 * 110.99989 * 223.60946 * 9 7 6 11 11 C 1.53002 * 109.47041 * 179.97438 * 10 9 7 12 12 H 1.08990 * 109.47355 * 304.99499 * 11 10 9 13 13 C 1.47196 * 109.46985 * 64.99758 * 11 10 9 14 14 N 6.57285 * 118.12442 * 165.76025 * 2 1 3 15 15 C 1.53000 * 109.46776 * 184.99509 * 11 10 9 16 16 C 1.50703 * 109.46912 * 175.00090 * 15 11 10 17 17 H 1.07996 * 119.99751 * 0.02562 * 16 15 11 18 18 C 1.37877 * 120.00001 * 180.02562 * 16 15 11 19 19 N 1.31512 * 119.99923 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00006 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47093 * 90.00088 * 20 18 16 22 22 H 1.48500 * 109.47049 * 210.00797 * 20 18 16 23 23 H 1.48504 * 109.47189 * 330.00185 * 20 18 16 24 24 H 1.09002 * 109.47306 * 299.99703 * 1 2 3 25 25 H 1.08997 * 109.47448 * 60.00156 * 1 2 3 26 26 H 1.09007 * 109.46982 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46956 * 239.99887 * 2 1 3 28 28 H 1.08996 * 109.47105 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.46888 * 300.00186 * 3 2 1 30 30 H 1.09003 * 109.47354 * 60.00131 * 3 2 1 31 31 H 1.08997 * 109.47283 * 205.68710 * 5 4 2 32 32 H 1.08991 * 109.46995 * 325.69011 * 5 4 2 33 33 H 1.09008 * 109.46650 * 85.68856 * 5 4 2 34 34 H 1.08994 * 117.49977 * 145.02109 * 6 4 2 35 35 H 1.08997 * 117.51522 * 359.97438 * 6 4 2 36 36 H 1.00900 * 111.00592 * 99.64962 * 9 7 6 37 37 H 1.08993 * 109.47016 * 59.99512 * 10 9 7 38 38 H 1.09001 * 109.46643 * 299.99223 * 10 9 7 39 39 H 1.09002 * 109.47398 * 295.00168 * 15 11 10 40 40 H 1.09001 * 109.47194 * 55.00349 * 15 11 10 41 41 H 0.97000 * 119.99684 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.1852 -1.8963 1.7284 6 6 2.7419 0.1227 2.3152 7 6 3.5551 -0.8280 1.4343 8 1 4.1887 -0.3844 0.6662 9 7 4.0776 -2.0509 2.0583 10 6 5.4686 -2.2953 1.6539 11 6 5.9770 -3.5739 2.3229 12 1 5.8455 -3.4964 3.4020 13 6 5.2160 -4.7280 1.8174 14 7 4.6283 -5.6187 1.4259 15 6 7.4612 -3.7617 2.0022 16 6 7.9920 -4.9518 2.7592 17 1 7.3362 -5.5177 3.4042 18 6 9.3148 -5.3179 2.6285 19 7 9.7779 -6.3567 3.2888 20 14 10.4489 -4.3393 1.5123 21 1 11.0863 -3.2464 2.2898 22 1 11.4991 -5.2355 0.9653 23 1 9.6627 -3.7583 0.3945 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.3352 -2.0422 2.7981 32 1 0.1340 -1.6836 1.5346 33 1 1.4777 -2.8001 1.1938 34 1 2.5947 -0.1592 3.3577 35 1 2.8409 1.1916 2.1265 36 1 3.4936 -2.8449 1.8427 37 1 6.0893 -1.4535 1.9607 38 1 5.5177 -2.4072 0.5708 39 1 7.5835 -3.9279 0.9319 40 1 8.0124 -2.8685 2.2965 41 1 10.7086 -6.6141 3.1970 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515005160.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:31 Heat of formation + Delta-G solvation = 29.210392 kcal Electronic energy + Delta-G solvation = -18089.242917 eV Core-core repulsion = 15390.206749 eV Total energy + Delta-G solvation = -2699.036168 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.58158 -37.16289 -34.87127 -33.68633 -32.46851 -30.80637 -29.46234 -26.87672 -26.30310 -23.14964 -22.94689 -21.65959 -20.74602 -18.36012 -16.96188 -16.86189 -16.20690 -15.75623 -14.81098 -14.68463 -14.01644 -13.50149 -13.48141 -13.38482 -13.07311 -12.90263 -12.58874 -12.53436 -12.31504 -12.08327 -11.92524 -11.62550 -11.53277 -11.39501 -11.22054 -11.14235 -10.88143 -10.83507 -10.46270 -10.30297 -10.01891 -9.82160 -9.53251 -9.32335 -8.61823 -8.21788 -6.10738 -4.11406 3.25830 3.34538 3.35323 3.50539 3.55058 3.68821 4.01295 4.38152 4.57578 4.62443 4.69050 4.78680 4.86393 5.08500 5.22545 5.24207 5.33427 5.39388 5.40885 5.50508 5.61346 5.63627 5.68908 5.70230 5.73157 5.85384 5.91431 5.97230 6.01840 6.10252 6.13217 6.23344 6.29536 6.35540 6.92743 7.07864 7.14847 7.36544 7.63525 8.32591 8.42294 8.92807 9.49054 11.02409 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.034855 B = 0.004199 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.124630 B = 6667.005783 C = 7088.152820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.059 4.059 3 C -0.150 4.150 4 C -0.135 4.135 5 C -0.122 4.122 6 C -0.163 4.163 7 C 0.027 3.973 8 H 0.099 0.901 9 N -0.660 5.660 10 C 0.067 3.933 11 C 0.016 3.984 12 H 0.117 0.883 13 C 0.238 3.762 14 N -0.468 5.468 15 C -0.004 4.004 16 C -0.528 4.528 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.897 5.897 20 Si 0.878 3.122 21 H -0.274 1.274 22 H -0.287 1.287 23 H -0.265 1.265 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.341 0.659 37 H 0.092 0.908 38 H 0.036 0.964 39 H 0.023 0.977 40 H 0.035 0.965 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.111 16.890 -5.400 23.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 C -0.207 4.207 4 C -0.136 4.136 5 C -0.179 4.179 6 C -0.201 4.201 7 C -0.084 4.084 8 H 0.117 0.883 9 N -0.291 5.291 10 C -0.063 4.063 11 C -0.006 4.006 12 H 0.134 0.866 13 C -0.079 4.079 14 N -0.145 5.145 15 C -0.043 4.043 16 C -0.566 4.566 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.535 5.535 20 Si 0.705 3.295 21 H -0.200 1.200 22 H -0.213 1.213 23 H -0.189 1.189 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.162 0.838 37 H 0.111 0.889 38 H 0.054 0.946 39 H 0.042 0.958 40 H 0.053 0.947 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.651 15.717 -5.368 22.821 hybrid contribution 0.981 0.320 -1.220 1.598 sum -14.670 16.037 -6.588 22.711 Atomic orbital electron populations 1.21893 0.95085 1.01846 1.01480 1.20573 0.95661 0.95434 0.96130 1.21968 1.01100 0.95944 1.01656 1.21910 0.93814 1.00023 0.97887 1.21385 0.99245 0.95913 1.01320 1.23495 1.03022 0.96919 0.96680 1.22520 0.91936 0.94734 0.99222 0.88346 1.60306 1.03365 1.04876 1.60537 1.22152 0.88888 0.97699 0.97573 1.19075 0.95332 0.84666 1.01483 0.86574 1.29191 0.91937 0.94274 0.92518 1.81071 1.12444 1.10522 1.10426 1.19628 0.88125 0.98700 0.97828 1.21032 0.96025 1.11853 1.27683 0.90782 1.24994 0.98067 0.94799 0.95271 1.69907 1.15497 1.26148 1.41959 0.86812 0.80812 0.80246 0.81654 1.19959 1.21327 1.18923 0.92520 0.92982 0.92207 0.91275 0.92531 0.92885 0.92140 0.91813 0.91479 0.92704 0.88461 0.88486 0.83816 0.88936 0.94610 0.95848 0.94664 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.20 37.16 0.30 -0.80 16 2 C -0.06 -0.51 3.15 -90.62 -0.29 -0.79 16 3 C -0.15 -1.13 7.79 37.16 0.29 -0.84 16 4 C -0.14 -1.32 2.47 -154.50 -0.38 -1.70 16 5 C -0.12 -1.22 8.43 37.16 0.31 -0.90 16 6 C -0.16 -1.61 9.14 -26.73 -0.24 -1.86 16 7 C 0.03 0.30 5.61 -67.71 -0.38 -0.08 16 8 H 0.10 1.06 7.36 -51.93 -0.38 0.68 16 9 N -0.66 -8.64 6.56 -106.72 -0.70 -9.34 16 10 C 0.07 0.94 4.97 -3.82 -0.02 0.93 16 11 C 0.02 0.29 2.42 -93.41 -0.23 0.07 16 12 H 0.12 2.03 8.14 -51.93 -0.42 1.61 16 13 C 0.24 4.79 12.98 -20.74 -0.27 4.52 16 14 N -0.47 -10.24 18.54 42.18 0.78 -9.46 16 15 C 0.00 -0.08 3.49 -27.88 -0.10 -0.18 16 16 C -0.53 -14.29 9.15 -34.44 -0.32 -14.61 16 17 H 0.07 2.20 7.84 -52.49 -0.41 1.79 16 18 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 19 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 20 Si 0.88 20.70 27.47 -169.99 -4.67 16.03 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.46 6.45 -51.93 -0.33 0.12 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.44 7.07 -51.93 -0.37 0.07 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.44 6.98 -51.93 -0.36 0.08 16 31 H 0.06 0.67 7.90 -51.93 -0.41 0.26 16 32 H 0.07 0.58 5.58 -51.93 -0.29 0.29 16 33 H 0.05 0.60 7.59 -51.92 -0.39 0.20 16 34 H 0.10 1.04 8.05 -51.93 -0.42 0.62 16 35 H 0.10 0.84 5.85 -51.93 -0.30 0.54 16 36 H 0.34 4.72 6.27 -39.29 -0.25 4.47 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.02 0.51 7.20 -51.93 -0.37 0.14 16 40 H 0.04 0.70 7.57 -51.93 -0.39 0.31 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 327.55 15.07 4.94 4.94 Total: -1.00 -30.09 327.55 -7.10 -37.19 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.81 Total: 1.42 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -1.41 Total: -14.36 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.86 Total: -45.21 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.03 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.09 -7.10 -37.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515005160.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.398 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds