Wall clock time and date at job start Sun Mar 29 2020 22:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47009 * 2 1 4 4 C 1.53000 * 109.47226 * 119.99909 * 2 1 3 5 5 C 1.53004 * 115.56252 * 34.31069 * 4 2 1 6 6 C 1.53005 * 117.49974 * 248.62243 * 4 2 1 7 7 C 1.53005 * 60.00119 * 252.51168 * 6 4 2 8 8 H 1.09000 * 117.49892 * 107.50988 * 7 6 4 9 9 N 1.46895 * 117.49925 * 252.51303 * 7 6 4 10 10 C 1.46903 * 110.99989 * 223.60946 * 9 7 6 11 11 C 1.53002 * 109.47041 * 179.97438 * 10 9 7 12 12 H 1.08990 * 109.47355 * 304.99499 * 11 10 9 13 13 C 1.47196 * 109.46985 * 64.99758 * 11 10 9 14 14 N 6.57285 * 118.12442 * 165.76025 * 2 1 3 15 15 C 1.53000 * 109.46776 * 184.99509 * 11 10 9 16 16 C 1.50703 * 109.46912 * 175.00090 * 15 11 10 17 17 H 1.07996 * 119.99751 * 0.02562 * 16 15 11 18 18 C 1.37877 * 120.00001 * 180.02562 * 16 15 11 19 19 N 1.31512 * 119.99923 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00006 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47093 * 90.00088 * 20 18 16 22 22 H 1.48500 * 109.47049 * 210.00797 * 20 18 16 23 23 H 1.48504 * 109.47189 * 330.00185 * 20 18 16 24 24 H 1.09002 * 109.47306 * 299.99703 * 1 2 3 25 25 H 1.08997 * 109.47448 * 60.00156 * 1 2 3 26 26 H 1.09007 * 109.46982 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46956 * 239.99887 * 2 1 3 28 28 H 1.08996 * 109.47105 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.46888 * 300.00186 * 3 2 1 30 30 H 1.09003 * 109.47354 * 60.00131 * 3 2 1 31 31 H 1.08997 * 109.47283 * 205.68710 * 5 4 2 32 32 H 1.08991 * 109.46995 * 325.69011 * 5 4 2 33 33 H 1.09008 * 109.46650 * 85.68856 * 5 4 2 34 34 H 1.08994 * 117.49977 * 145.02109 * 6 4 2 35 35 H 1.08997 * 117.51522 * 359.97438 * 6 4 2 36 36 H 1.00900 * 111.00592 * 99.64962 * 9 7 6 37 37 H 1.08993 * 109.47016 * 59.99512 * 10 9 7 38 38 H 1.09001 * 109.46643 * 299.99223 * 10 9 7 39 39 H 1.09002 * 109.47398 * 295.00168 * 15 11 10 40 40 H 1.09001 * 109.47194 * 55.00349 * 15 11 10 41 41 H 0.97000 * 119.99684 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.1852 -1.8963 1.7284 6 6 2.7419 0.1227 2.3152 7 6 3.5551 -0.8280 1.4343 8 1 4.1887 -0.3844 0.6662 9 7 4.0776 -2.0509 2.0583 10 6 5.4686 -2.2953 1.6539 11 6 5.9770 -3.5739 2.3229 12 1 5.8455 -3.4964 3.4020 13 6 5.2160 -4.7280 1.8174 14 7 4.6283 -5.6187 1.4259 15 6 7.4612 -3.7617 2.0022 16 6 7.9920 -4.9518 2.7592 17 1 7.3362 -5.5177 3.4042 18 6 9.3148 -5.3179 2.6285 19 7 9.7779 -6.3567 3.2888 20 14 10.4489 -4.3393 1.5123 21 1 11.0863 -3.2464 2.2898 22 1 11.4991 -5.2355 0.9653 23 1 9.6627 -3.7583 0.3945 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.3352 -2.0422 2.7981 32 1 0.1340 -1.6836 1.5346 33 1 1.4777 -2.8001 1.1938 34 1 2.5947 -0.1592 3.3577 35 1 2.8409 1.1916 2.1265 36 1 3.4936 -2.8449 1.8427 37 1 6.0893 -1.4535 1.9607 38 1 5.5177 -2.4072 0.5708 39 1 7.5835 -3.9279 0.9319 40 1 8.0124 -2.8685 2.2965 41 1 10.7086 -6.6141 3.1970 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000515005160.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:31 Heat of formation + Delta-G solvation = 11.106777 kcal Electronic energy + Delta-G solvation = -18090.027949 eV Core-core repulsion = 15390.206749 eV Total energy + Delta-G solvation = -2699.821200 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.39449 -38.60770 -36.17395 -35.25583 -33.94079 -32.16237 -30.20097 -28.49653 -27.02014 -24.29902 -23.83732 -23.37104 -21.68801 -19.16981 -18.88614 -18.33737 -17.15396 -16.72669 -16.41760 -15.50119 -15.34882 -14.91974 -14.76344 -14.49178 -14.33003 -14.04556 -13.87713 -13.72138 -13.40821 -13.26193 -13.16651 -12.71801 -12.65500 -12.52394 -12.27485 -12.18050 -12.12963 -11.92369 -11.68994 -11.59539 -11.47452 -11.33164 -11.11091 -10.73371 -10.38548 -9.17985 -8.25141 -6.31008 1.42690 1.45329 1.55607 1.89873 1.91423 2.40852 2.87728 3.02842 3.10426 3.20440 3.83727 3.90823 4.03642 4.09621 4.21828 4.28797 4.41761 4.48298 4.57745 4.66206 4.75512 4.84471 4.87784 4.91674 4.94977 4.98530 5.03290 5.10575 5.15654 5.20296 5.22806 5.27246 5.44639 5.45665 5.51202 5.57127 5.63044 6.12622 6.25999 6.29282 6.71489 6.78667 7.33502 8.91912 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.034855 B = 0.004199 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.124630 B = 6667.005783 C = 7088.152820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 C -0.147 4.147 4 C -0.131 4.131 5 C -0.121 4.121 6 C -0.155 4.155 7 C 0.013 3.987 8 H 0.108 0.892 9 N -0.665 5.665 10 C 0.078 3.922 11 C 0.023 3.977 12 H 0.119 0.881 13 C 0.247 3.753 14 N -0.505 5.505 15 C -0.001 4.001 16 C -0.532 4.532 17 H 0.028 0.972 18 C 0.002 3.998 19 N -0.954 5.954 20 Si 0.950 3.050 21 H -0.256 1.256 22 H -0.295 1.295 23 H -0.238 1.238 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.334 0.666 37 H 0.114 0.886 38 H 0.041 0.959 39 H 0.027 0.973 40 H 0.064 0.936 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.279 20.026 -6.778 26.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 C -0.204 4.204 4 C -0.132 4.132 5 C -0.178 4.178 6 C -0.192 4.192 7 C -0.098 4.098 8 H 0.125 0.875 9 N -0.296 5.296 10 C -0.052 4.052 11 C 0.001 3.999 12 H 0.136 0.864 13 C -0.069 4.069 14 N -0.182 5.182 15 C -0.040 4.040 16 C -0.570 4.570 17 H 0.046 0.954 18 C -0.194 4.194 19 N -0.595 5.595 20 Si 0.773 3.227 21 H -0.181 1.181 22 H -0.222 1.222 23 H -0.161 1.161 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.107 0.893 35 H 0.131 0.869 36 H 0.154 0.846 37 H 0.133 0.867 38 H 0.059 0.941 39 H 0.045 0.955 40 H 0.082 0.918 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.850 18.883 -6.746 25.560 hybrid contribution 0.944 -0.722 -0.715 1.387 sum -14.907 18.161 -7.462 24.652 Atomic orbital electron populations 1.21878 0.94386 1.01823 1.02076 1.20592 0.96263 0.95921 0.95027 1.21946 1.01040 0.95149 1.02286 1.21962 0.92904 0.99858 0.98491 1.21378 1.00208 0.95673 1.00559 1.23511 1.02069 0.97587 0.96083 1.22618 0.92855 0.94195 1.00089 0.87481 1.60301 1.02829 1.05387 1.61061 1.22042 0.89772 0.95949 0.97400 1.19118 0.93161 0.85617 1.01988 0.86365 1.29754 0.91355 0.94171 0.91615 1.81065 1.13690 1.11653 1.11796 1.19575 0.90345 0.97148 0.96976 1.21402 0.95542 1.13088 1.27015 0.95378 1.26058 1.00237 0.95991 0.97142 1.70092 1.16049 1.28780 1.44584 0.85662 0.78217 0.78739 0.80089 1.18056 1.22156 1.16083 0.92250 0.92073 0.92559 0.91937 0.92593 0.92090 0.91710 0.92673 0.90200 0.93955 0.89335 0.86868 0.84641 0.86749 0.94065 0.95481 0.91789 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.20 71.98 0.59 -1.30 16 2 C -0.06 -0.89 3.15 -10.79 -0.03 -0.92 16 3 C -0.15 -1.81 7.79 71.98 0.56 -1.25 16 4 C -0.13 -2.33 2.47 -52.18 -0.13 -2.46 16 5 C -0.12 -2.32 8.43 71.98 0.61 -1.71 16 6 C -0.15 -2.70 9.14 30.60 0.28 -2.42 16 7 C 0.01 0.25 5.61 44.92 0.25 0.50 16 8 H 0.11 1.98 7.36 -2.39 -0.02 1.96 16 9 N -0.67 -16.27 6.56 -491.56 -3.22 -19.49 16 10 C 0.08 2.00 4.97 86.30 0.43 2.43 16 11 C 0.02 0.79 2.42 -12.60 -0.03 0.76 16 12 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 13 C 0.25 9.94 12.98 89.43 1.16 11.10 16 14 N -0.50 -22.38 18.54 20.01 0.37 -22.01 16 15 C 0.00 -0.06 3.49 29.85 0.10 0.05 16 16 C -0.53 -29.06 9.15 25.60 0.23 -28.82 16 17 H 0.03 1.74 7.84 -2.91 -0.02 1.71 16 18 C 0.00 0.13 5.47 84.65 0.46 0.59 16 19 N -0.95 -59.48 13.96 21.45 0.30 -59.18 16 20 Si 0.95 41.65 27.47 68.60 1.88 43.53 16 21 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 22 H -0.30 -13.24 7.11 99.48 0.71 -12.53 16 23 H -0.24 -9.32 6.54 99.48 0.65 -8.67 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.77 6.45 -2.38 -0.02 0.75 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 0.70 7.07 -2.39 -0.02 0.68 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.75 6.98 -2.39 -0.02 0.73 16 31 H 0.05 1.13 7.90 -2.39 -0.02 1.11 16 32 H 0.08 1.29 5.58 -2.39 -0.01 1.28 16 33 H 0.04 0.91 7.59 -2.38 -0.02 0.89 16 34 H 0.09 1.73 8.05 -2.39 -0.02 1.71 16 35 H 0.11 1.61 5.85 -2.39 -0.01 1.60 16 36 H 0.33 8.96 6.27 -89.69 -0.56 8.40 16 37 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.04 1.02 8.14 -2.39 -0.02 1.01 16 39 H 0.03 1.10 7.20 -2.39 -0.02 1.08 16 40 H 0.06 2.30 7.57 -2.39 -0.02 2.28 16 41 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -66.35 327.55 4.21 -62.15 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.39 Total: 18.45 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: 4.49 Total: -23.45 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -2.55 Total: -100.68 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 1.88 Total: 43.53 kcal Total: -66.35 4.21 -62.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515005160.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.253 kcal (2) G-P(sol) polarization free energy of solvation -66.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds