Wall clock time and date at job start Sun Mar 29 2020 22:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47256 * 2 1 4 4 C 1.53006 * 109.46982 * 119.99570 * 2 1 3 5 5 C 1.53003 * 115.55900 * 34.31136 * 4 2 1 6 6 C 1.52996 * 117.49991 * 248.62444 * 4 2 1 7 7 C 1.52997 * 117.49860 * 180.02562 * 4 2 1 8 8 H 1.09000 * 117.51772 * 0.02562 * 7 4 2 9 9 N 1.46897 * 117.49762 * 214.98123 * 7 4 2 10 10 C 1.46901 * 111.00103 * 154.98894 * 9 7 4 11 11 C 1.53000 * 109.47143 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47398 * 54.99743 * 11 10 9 13 13 C 1.47201 * 109.46973 * 294.99668 * 11 10 9 14 14 N 7.41811 * 127.63213 * 123.36130 * 2 1 3 15 15 C 1.53002 * 109.47233 * 174.99916 * 11 10 9 16 16 C 1.50696 * 109.47344 * 184.99683 * 15 11 10 17 17 H 1.08002 * 119.99611 * 0.02562 * 16 15 11 18 18 C 1.37875 * 119.99982 * 179.97438 * 16 15 11 19 19 N 1.31514 * 119.99909 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99930 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47363 * 60.00349 * 20 18 16 22 22 H 1.48503 * 109.47300 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47448 * 300.00298 * 20 18 16 24 24 H 1.09000 * 109.47043 * 300.00551 * 1 2 3 25 25 H 1.08999 * 109.46918 * 60.00110 * 1 2 3 26 26 H 1.09004 * 109.46981 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47043 * 239.99449 * 2 1 3 28 28 H 1.08993 * 109.47097 * 179.97438 * 3 2 1 29 29 H 1.09009 * 109.46548 * 299.99828 * 3 2 1 30 30 H 1.08997 * 109.47091 * 59.99535 * 3 2 1 31 31 H 1.09004 * 109.47156 * 205.68957 * 5 4 2 32 32 H 1.08998 * 109.47053 * 325.68684 * 5 4 2 33 33 H 1.08998 * 109.46979 * 85.68996 * 5 4 2 34 34 H 1.09001 * 117.50048 * 145.01978 * 6 4 2 35 35 H 1.09002 * 117.51914 * 359.97438 * 6 4 2 36 36 H 1.00904 * 110.99620 * 278.93928 * 9 7 4 37 37 H 1.08990 * 109.47350 * 59.99906 * 10 9 7 38 38 H 1.09001 * 109.46871 * 299.99769 * 10 9 7 39 39 H 1.09008 * 109.46873 * 304.99791 * 15 11 10 40 40 H 1.08997 * 109.47047 * 64.99480 * 15 11 10 41 41 H 0.97003 * 119.99535 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.1851 -1.8962 1.7285 6 6 2.7418 0.1227 2.3152 7 6 3.5550 -0.8275 1.4347 8 1 4.1887 -0.3834 0.6671 9 7 4.0778 -2.0502 2.0588 10 6 5.4689 -2.2941 1.6548 11 6 5.9772 -3.5734 2.3227 12 1 5.3050 -4.3983 2.0866 13 6 6.0235 -3.3802 3.7813 14 7 6.0595 -3.2306 4.9067 15 6 7.3809 -3.8954 1.8061 16 6 7.8323 -5.2183 2.3694 17 1 7.1827 -5.7740 3.0294 18 6 9.0740 -5.7196 2.0412 19 7 9.8647 -5.0431 1.2370 20 14 9.6332 -7.3597 2.7388 21 1 8.6918 -8.4260 2.3122 22 1 10.9957 -7.6722 2.2375 23 1 9.6571 -7.2847 4.2217 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.3350 -2.0421 2.7983 32 1 0.1338 -1.6834 1.5346 33 1 1.4776 -2.8000 1.1940 34 1 2.5946 -0.1591 3.3578 35 1 2.8408 1.1917 2.1266 36 1 3.9953 -2.0071 3.0635 37 1 6.0894 -1.4523 1.9618 38 1 5.5184 -2.4059 0.5716 39 1 7.3636 -3.9508 0.7176 40 1 8.0717 -3.1125 2.1191 41 1 10.7385 -5.3957 1.0065 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515005161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:33 Heat of formation + Delta-G solvation = 25.143651 kcal Electronic energy + Delta-G solvation = -18005.304965 eV Core-core repulsion = 15306.092450 eV Total energy + Delta-G solvation = -2699.212515 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.48596 -37.06904 -34.84788 -33.66527 -32.45536 -30.53168 -29.25333 -26.55365 -26.01485 -23.15763 -22.88719 -21.90571 -20.95880 -18.19167 -16.81105 -16.57441 -16.05764 -15.42980 -14.80657 -14.62283 -14.27322 -13.45645 -13.29013 -13.17431 -12.93491 -12.81871 -12.49032 -12.45357 -12.10079 -11.92630 -11.77078 -11.60212 -11.49322 -11.27164 -11.09228 -11.00595 -10.79528 -10.70735 -10.56537 -10.40905 -10.15823 -9.72163 -9.47251 -9.21338 -8.45153 -8.06433 -6.09499 -4.12728 3.31451 3.35564 3.39190 3.55794 3.60183 3.72803 4.13442 4.41680 4.68436 4.74162 4.79503 4.87612 4.92388 5.02850 5.26754 5.28543 5.45401 5.46203 5.54437 5.57107 5.70862 5.73291 5.75690 5.76956 5.86685 5.91612 5.99782 6.07689 6.15654 6.18978 6.24824 6.38176 6.45855 6.54386 7.16309 7.41363 7.44351 7.52889 7.85331 8.23046 8.39226 8.91543 9.52686 11.01369 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.037086 B = 0.003856 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.818575 B = 7260.155555 C = 7443.102123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.059 4.059 3 C -0.150 4.150 4 C -0.110 4.110 5 C -0.109 4.109 6 C -0.207 4.207 7 C 0.035 3.965 8 H 0.109 0.891 9 N -0.658 5.658 10 C 0.069 3.931 11 C 0.006 3.994 12 H 0.111 0.889 13 C 0.241 3.759 14 N -0.477 5.477 15 C 0.033 3.967 16 C -0.527 4.527 17 H 0.056 0.944 18 C 0.063 3.937 19 N -0.892 5.892 20 Si 0.892 3.108 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.277 1.277 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.339 0.661 37 H 0.036 0.964 38 H 0.092 0.908 39 H 0.040 0.960 40 H 0.024 0.976 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.442 10.948 -4.515 20.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 C -0.207 4.207 4 C -0.111 4.111 5 C -0.166 4.166 6 C -0.246 4.246 7 C -0.076 4.076 8 H 0.126 0.874 9 N -0.287 5.287 10 C -0.061 4.061 11 C -0.016 4.016 12 H 0.129 0.871 13 C -0.076 4.076 14 N -0.154 5.154 15 C -0.006 4.006 16 C -0.565 4.565 17 H 0.074 0.926 18 C -0.139 4.139 19 N -0.530 5.530 20 Si 0.719 3.281 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.203 1.203 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.158 0.842 37 H 0.054 0.946 38 H 0.110 0.890 39 H 0.058 0.942 40 H 0.042 0.958 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.450 10.728 -3.371 19.926 hybrid contribution 0.984 -0.310 0.536 1.163 sum -15.465 10.418 -2.835 18.861 Atomic orbital electron populations 1.21891 0.95205 1.01890 1.01281 1.20566 0.95515 0.95202 0.96450 1.21974 1.01061 0.96172 1.01515 1.21785 0.94196 0.98584 0.96538 1.21274 0.98018 0.96585 1.00724 1.23831 1.06282 0.98078 0.96399 1.22545 0.93159 0.91374 1.00509 0.87351 1.60260 1.20657 1.34361 1.13421 1.22125 0.86628 0.96086 1.01215 1.19342 1.03290 0.97980 0.80951 0.87123 1.29326 0.91115 0.91818 0.95291 1.81029 1.10950 1.10223 1.13184 1.19156 0.86705 0.97335 0.97369 1.21109 1.01409 1.04714 1.29312 0.92557 1.24949 0.96567 0.97497 0.94928 1.69930 1.09665 1.38420 1.35030 0.86649 0.77826 0.84080 0.79497 1.19991 1.21186 1.20279 0.92771 0.93058 0.92059 0.90818 0.92599 0.92865 0.92409 0.92971 0.92483 0.91552 0.89176 0.88406 0.84156 0.94559 0.88952 0.94181 0.95756 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.20 37.16 0.30 -0.84 16 2 C -0.06 -0.52 3.15 -90.61 -0.29 -0.81 16 3 C -0.15 -1.21 7.79 37.16 0.29 -0.92 16 4 C -0.11 -1.13 2.47 -154.51 -0.38 -1.51 16 5 C -0.11 -1.14 8.95 37.16 0.33 -0.81 16 6 C -0.21 -2.17 8.91 -26.76 -0.24 -2.40 16 7 C 0.04 0.41 5.65 -67.74 -0.38 0.02 16 8 H 0.11 1.22 7.36 -51.93 -0.38 0.84 16 9 N -0.66 -8.83 6.15 -106.76 -0.66 -9.49 16 10 C 0.07 1.03 4.97 -3.82 -0.02 1.01 16 11 C 0.01 0.12 2.42 -93.40 -0.23 -0.11 16 12 H 0.11 1.97 8.14 -51.93 -0.42 1.54 16 13 C 0.24 4.90 12.98 -20.76 -0.27 4.63 16 14 N -0.48 -10.45 18.54 42.15 0.78 -9.67 16 15 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 16 C -0.53 -14.09 8.60 -34.44 -0.30 -14.38 16 17 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 20 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.48 6.45 -51.93 -0.33 0.14 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.46 7.07 -51.93 -0.37 0.09 16 29 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.06 0.46 6.98 -51.93 -0.36 0.09 16 31 H 0.05 0.58 7.90 -51.93 -0.41 0.16 16 32 H 0.06 0.52 5.58 -51.93 -0.29 0.23 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.99 7.99 -51.93 -0.42 0.57 16 35 H 0.10 0.92 5.85 -51.93 -0.30 0.62 16 36 H 0.34 4.78 7.59 -39.29 -0.30 4.48 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.04 0.94 8.14 -51.92 -0.42 0.52 16 40 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 332.89 15.07 5.02 5.02 Total: -1.00 -28.79 332.89 -7.46 -36.25 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.92 Total: 0.22 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -1.39 Total: -13.84 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.86 Total: -44.01 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.79 -7.46 -36.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515005161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.390 kcal (2) G-P(sol) polarization free energy of solvation -28.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds