Wall clock time and date at job start Sun Mar 29 2020 22:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47256 * 2 1 4 4 C 1.53006 * 109.46982 * 119.99570 * 2 1 3 5 5 C 1.53003 * 115.55900 * 34.31136 * 4 2 1 6 6 C 1.52996 * 117.49991 * 248.62444 * 4 2 1 7 7 C 1.52997 * 117.49860 * 180.02562 * 4 2 1 8 8 H 1.09000 * 117.51772 * 0.02562 * 7 4 2 9 9 N 1.46897 * 117.49762 * 214.98123 * 7 4 2 10 10 C 1.46901 * 111.00103 * 154.98894 * 9 7 4 11 11 C 1.53000 * 109.47143 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47398 * 54.99743 * 11 10 9 13 13 C 1.47201 * 109.46973 * 294.99668 * 11 10 9 14 14 N 7.41811 * 127.63213 * 123.36130 * 2 1 3 15 15 C 1.53002 * 109.47233 * 174.99916 * 11 10 9 16 16 C 1.50696 * 109.47344 * 184.99683 * 15 11 10 17 17 H 1.08002 * 119.99611 * 0.02562 * 16 15 11 18 18 C 1.37875 * 119.99982 * 179.97438 * 16 15 11 19 19 N 1.31514 * 119.99909 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99930 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47363 * 60.00349 * 20 18 16 22 22 H 1.48503 * 109.47300 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47448 * 300.00298 * 20 18 16 24 24 H 1.09000 * 109.47043 * 300.00551 * 1 2 3 25 25 H 1.08999 * 109.46918 * 60.00110 * 1 2 3 26 26 H 1.09004 * 109.46981 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47043 * 239.99449 * 2 1 3 28 28 H 1.08993 * 109.47097 * 179.97438 * 3 2 1 29 29 H 1.09009 * 109.46548 * 299.99828 * 3 2 1 30 30 H 1.08997 * 109.47091 * 59.99535 * 3 2 1 31 31 H 1.09004 * 109.47156 * 205.68957 * 5 4 2 32 32 H 1.08998 * 109.47053 * 325.68684 * 5 4 2 33 33 H 1.08998 * 109.46979 * 85.68996 * 5 4 2 34 34 H 1.09001 * 117.50048 * 145.01978 * 6 4 2 35 35 H 1.09002 * 117.51914 * 359.97438 * 6 4 2 36 36 H 1.00904 * 110.99620 * 278.93928 * 9 7 4 37 37 H 1.08990 * 109.47350 * 59.99906 * 10 9 7 38 38 H 1.09001 * 109.46871 * 299.99769 * 10 9 7 39 39 H 1.09008 * 109.46873 * 304.99791 * 15 11 10 40 40 H 1.08997 * 109.47047 * 64.99480 * 15 11 10 41 41 H 0.97003 * 119.99535 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.1851 -1.8962 1.7285 6 6 2.7418 0.1227 2.3152 7 6 3.5550 -0.8275 1.4347 8 1 4.1887 -0.3834 0.6671 9 7 4.0778 -2.0502 2.0588 10 6 5.4689 -2.2941 1.6548 11 6 5.9772 -3.5734 2.3227 12 1 5.3050 -4.3983 2.0866 13 6 6.0235 -3.3802 3.7813 14 7 6.0595 -3.2306 4.9067 15 6 7.3809 -3.8954 1.8061 16 6 7.8323 -5.2183 2.3694 17 1 7.1827 -5.7740 3.0294 18 6 9.0740 -5.7196 2.0412 19 7 9.8647 -5.0431 1.2370 20 14 9.6332 -7.3597 2.7388 21 1 8.6918 -8.4260 2.3122 22 1 10.9957 -7.6722 2.2375 23 1 9.6571 -7.2847 4.2217 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.3350 -2.0421 2.7983 32 1 0.1338 -1.6834 1.5346 33 1 1.4776 -2.8000 1.1940 34 1 2.5946 -0.1591 3.3578 35 1 2.8408 1.1917 2.1266 36 1 3.9953 -2.0071 3.0635 37 1 6.0894 -1.4523 1.9618 38 1 5.5184 -2.4059 0.5716 39 1 7.3636 -3.9508 0.7176 40 1 8.0717 -3.1125 2.1191 41 1 10.7385 -5.3957 1.0065 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000515005161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:33 Heat of formation + Delta-G solvation = 9.600937 kcal Electronic energy + Delta-G solvation = -18005.978948 eV Core-core repulsion = 15306.092450 eV Total energy + Delta-G solvation = -2699.886498 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.35476 -38.56838 -36.17451 -35.31866 -33.85917 -31.91919 -30.04228 -28.13178 -26.90488 -24.45673 -23.91446 -23.52459 -21.92795 -19.00206 -18.55670 -18.22864 -17.12391 -16.62620 -16.46519 -15.61586 -15.29262 -14.74686 -14.63288 -14.54014 -14.10014 -13.94217 -13.82096 -13.61448 -13.31376 -13.22072 -13.08804 -12.76346 -12.67031 -12.48128 -12.39590 -12.30229 -12.22582 -12.03018 -11.80436 -11.46089 -11.38958 -11.26374 -11.09674 -10.55245 -10.41432 -9.08526 -8.19800 -6.28217 1.41153 1.42381 1.49680 1.91948 1.94118 2.41207 2.81538 3.14485 3.15290 3.23573 3.92521 3.93638 4.02747 4.11402 4.21558 4.33214 4.40127 4.50152 4.64881 4.74613 4.80924 4.86894 4.90112 4.96272 5.02225 5.06715 5.07802 5.13877 5.15198 5.29362 5.32504 5.46348 5.49062 5.56226 5.61864 5.66071 5.78670 6.08220 6.21623 6.30656 6.73215 6.86294 7.40326 8.90949 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.037086 B = 0.003856 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.818575 B = 7260.155555 C = 7443.102123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.059 4.059 3 C -0.148 4.148 4 C -0.103 4.103 5 C -0.108 4.108 6 C -0.201 4.201 7 C 0.019 3.981 8 H 0.114 0.886 9 N -0.657 5.657 10 C 0.082 3.918 11 C 0.019 3.981 12 H 0.122 0.878 13 C 0.251 3.749 14 N -0.505 5.505 15 C 0.039 3.961 16 C -0.541 4.541 17 H 0.054 0.946 18 C 0.012 3.988 19 N -0.923 5.923 20 Si 0.949 3.051 21 H -0.263 1.263 22 H -0.281 1.281 23 H -0.281 1.281 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.334 0.666 37 H 0.034 0.966 38 H 0.105 0.895 39 H 0.037 0.963 40 H 0.000 1.000 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.693 11.193 -4.974 21.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.078 4.078 3 C -0.205 4.205 4 C -0.104 4.104 5 C -0.165 4.165 6 C -0.240 4.240 7 C -0.091 4.091 8 H 0.131 0.869 9 N -0.286 5.286 10 C -0.048 4.048 11 C -0.003 4.003 12 H 0.140 0.860 13 C -0.065 4.065 14 N -0.182 5.182 15 C 0.000 4.000 16 C -0.579 4.579 17 H 0.072 0.928 18 C -0.187 4.187 19 N -0.563 5.563 20 Si 0.774 3.226 21 H -0.187 1.187 22 H -0.207 1.207 23 H -0.207 1.207 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.128 0.872 36 H 0.153 0.847 37 H 0.052 0.948 38 H 0.123 0.877 39 H 0.055 0.945 40 H 0.019 0.981 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.720 10.975 -3.835 21.194 hybrid contribution 1.346 -0.360 0.677 1.549 sum -16.374 10.616 -3.159 19.768 Atomic orbital electron populations 1.21870 0.94293 1.02045 1.01846 1.20592 0.96270 0.95498 0.95390 1.21954 1.00831 0.95629 1.02113 1.21862 0.93067 0.98418 0.97070 1.21267 0.99018 0.96261 0.99974 1.23844 1.05491 0.98593 0.96029 1.22633 0.94115 0.91182 1.01199 0.86862 1.60252 1.19383 1.35818 1.13160 1.21951 0.87480 0.94013 1.01403 1.19232 1.00874 1.00329 0.79834 0.85986 1.29659 0.90317 0.90909 0.95580 1.81028 1.11717 1.11384 1.14084 1.18978 0.88828 0.95153 0.97017 1.21530 1.01474 1.05995 1.28939 0.92802 1.25712 0.96939 1.00680 0.95393 1.70026 1.10039 1.39934 1.36294 0.85748 0.77765 0.80695 0.78369 1.18747 1.20672 1.20688 0.92683 0.92044 0.92112 0.91181 0.92953 0.91912 0.92191 0.93836 0.91026 0.92586 0.89767 0.87190 0.84712 0.94783 0.87701 0.94501 0.98116 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.20 71.98 0.59 -1.34 16 2 C -0.06 -0.93 3.15 -10.79 -0.03 -0.96 16 3 C -0.15 -2.06 7.79 71.98 0.56 -1.50 16 4 C -0.10 -1.95 2.47 -52.18 -0.13 -2.07 16 5 C -0.11 -2.12 8.95 71.98 0.64 -1.48 16 6 C -0.20 -3.89 8.91 30.58 0.27 -3.62 16 7 C 0.02 0.41 5.65 44.90 0.25 0.67 16 8 H 0.11 2.36 7.36 -2.39 -0.02 2.34 16 9 N -0.66 -16.91 6.15 -491.68 -3.02 -19.93 16 10 C 0.08 2.34 4.97 86.30 0.43 2.77 16 11 C 0.02 0.69 2.42 -12.60 -0.03 0.66 16 12 H 0.12 4.18 8.14 -2.39 -0.02 4.16 16 13 C 0.25 10.11 12.98 89.44 1.16 11.27 16 14 N -0.50 -21.98 18.54 20.00 0.37 -21.61 16 15 C 0.04 1.81 4.42 29.85 0.13 1.94 16 16 C -0.54 -28.85 8.60 25.60 0.22 -28.63 16 17 H 0.05 2.84 7.59 -2.91 -0.02 2.81 16 18 C 0.01 0.65 5.46 84.65 0.46 1.11 16 19 N -0.92 -53.18 13.29 21.45 0.28 -52.89 16 20 Si 0.95 43.58 29.54 68.60 2.03 45.60 16 21 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 24 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.82 6.45 -2.39 -0.02 0.81 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.05 0.76 7.07 -2.39 -0.02 0.75 16 29 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.06 0.81 6.98 -2.39 -0.02 0.79 16 31 H 0.04 0.92 7.90 -2.38 -0.02 0.90 16 32 H 0.07 1.18 5.58 -2.39 -0.01 1.16 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.75 7.99 -2.39 -0.02 1.73 16 35 H 0.11 1.86 5.85 -2.39 -0.01 1.84 16 36 H 0.33 9.14 7.59 -89.69 -0.68 8.46 16 37 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 39 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 41 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -60.10 332.89 4.51 -55.58 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.32 Total: 14.42 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: 4.53 Total: -21.17 kcal Atomic # 7 Polarization: -92.07 SS G_CDS: -2.37 Total: -94.43 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -60.10 4.51 -55.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515005161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.185 kcal (2) G-P(sol) polarization free energy of solvation -60.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds