Wall clock time and date at job start Sun Mar 29 2020 22:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.46946 * 2 1 4 4 C 1.46895 * 111.00252 * 195.90343 * 3 2 1 5 5 C 1.50700 * 109.47538 * 77.57674 * 4 3 2 6 6 H 1.07998 * 119.99862 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00249 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99775 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00054 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47235 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47183 * 119.99446 * 9 7 5 12 12 H 1.48505 * 109.47164 * 239.99438 * 9 7 5 13 13 C 1.46895 * 111.00094 * 71.94217 * 3 2 1 14 14 H 1.08999 * 109.47462 * 301.30326 * 13 3 2 15 15 C 1.53010 * 109.47272 * 181.30467 * 13 3 2 16 16 C 1.50701 * 109.46897 * 61.31018 * 13 3 2 17 17 N 1.30405 * 119.29262 * 26.45019 * 16 13 3 18 18 C 1.33780 * 122.02537 * 179.75720 * 17 16 13 19 19 C 1.35646 * 120.41790 * 0.52350 * 18 17 16 20 20 C 1.41987 * 118.59460 * 359.75330 * 19 18 17 21 21 N 1.31475 * 120.91331 * 179.97438 * 20 19 18 22 22 N 1.35666 * 119.29042 * 206.73106 * 16 13 3 23 23 H 0.97004 * 120.30702 * 359.97438 * 22 16 13 24 24 H 1.09001 * 109.47381 * 294.43408 * 1 2 3 25 25 H 1.09000 * 109.47232 * 54.43679 * 1 2 3 26 26 H 1.09004 * 109.47214 * 174.43621 * 1 2 3 27 27 H 1.08994 * 109.46979 * 240.00092 * 2 1 3 28 28 H 1.08996 * 109.47378 * 119.99511 * 2 1 3 29 29 H 1.08998 * 109.47718 * 197.58130 * 4 3 2 30 30 H 1.09001 * 109.46685 * 317.57711 * 4 3 2 31 31 H 0.97001 * 120.00075 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.46762 * 300.00288 * 15 13 3 33 33 H 1.08997 * 109.46928 * 60.00231 * 15 13 3 34 34 H 1.08996 * 109.47171 * 180.02562 * 15 13 3 35 35 H 1.08007 * 119.78999 * 180.29515 * 18 17 16 36 36 H 1.07995 * 120.70203 * 179.77284 * 19 18 17 37 37 H 0.96999 * 120.00590 * 0.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4386 1.4418 -0.3758 5 6 3.5697 1.2838 -1.8687 6 1 2.6871 1.1546 -2.4776 7 6 4.8163 1.3042 -2.4573 8 7 5.8910 1.4621 -1.7159 9 14 4.9787 1.1091 -4.3080 10 1 3.6302 0.9484 -4.9090 11 1 5.6343 2.3138 -4.8771 12 1 5.8006 -0.0906 -4.6090 13 6 1.7943 2.0230 1.3038 14 1 0.7295 2.0089 1.5361 15 6 2.2865 3.4710 1.2550 16 6 2.5508 1.2711 2.3684 17 7 3.6203 0.6017 2.0388 18 6 4.3358 -0.0808 2.9398 19 6 3.9570 -0.1049 4.2421 20 6 2.7926 0.6119 4.6245 21 7 2.3838 0.6193 5.8740 22 7 2.1014 1.3005 3.6481 23 1 1.3017 1.8007 3.8747 24 1 -0.3634 0.4251 0.9356 25 1 -0.3634 0.5977 -0.8360 26 1 -0.3634 -1.0229 -0.0996 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 3.8563 2.4023 -0.0740 30 1 3.9791 0.6376 0.1235 31 1 6.7681 1.4769 -2.1300 32 1 3.3513 3.4851 1.0227 33 1 1.7393 4.0149 0.4850 34 1 2.1197 3.9443 2.2226 35 1 5.2187 -0.6191 2.6277 36 1 4.5291 -0.6574 4.9727 37 1 2.8798 0.1308 6.5495 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516532233.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:41 Heat of formation + Delta-G solvation = 81.766672 kcal Electronic energy + Delta-G solvation = -19004.445588 eV Core-core repulsion = 16204.148088 eV Total energy + Delta-G solvation = -2800.297500 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.96165 -37.57755 -34.75762 -33.76584 -32.51594 -31.48311 -29.17827 -29.10706 -26.26715 -24.56278 -23.41637 -22.15065 -21.97146 -19.56598 -18.16584 -17.30820 -16.34830 -16.27072 -15.27450 -14.76216 -14.63319 -14.51319 -14.27664 -13.94244 -13.35665 -12.76570 -12.30364 -12.11795 -11.81507 -11.72365 -11.41690 -11.23163 -11.01155 -10.91162 -10.62247 -10.35756 -10.27605 -10.14454 -9.67157 -9.56817 -9.25302 -8.96885 -8.29757 -7.52988 -7.23446 -5.90268 -3.89413 0.96777 2.16744 2.80957 3.35521 3.43484 3.47766 3.86914 4.17832 4.49710 4.77653 4.90723 5.10071 5.30774 5.37470 5.44806 5.48660 5.59956 5.66761 5.80937 5.91943 6.04315 6.10908 6.18276 6.25955 6.36983 6.59264 6.63454 6.64811 6.75697 7.23458 7.31735 7.83957 7.89149 8.15487 8.27055 8.33521 8.41935 8.63840 9.19768 9.71774 11.19165 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.026366 B = 0.006763 C = 0.006130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.731712 B = 4139.081085 C = 4566.242339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 N -0.502 5.502 4 C 0.175 3.825 5 C -0.503 4.503 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.890 3.110 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.287 1.287 13 C 0.125 3.875 14 H 0.094 0.906 15 C -0.144 4.144 16 C 0.384 3.616 17 N -0.519 5.519 18 C 0.157 3.843 19 C -0.307 4.307 20 C 0.427 3.573 21 N -0.803 5.803 22 N -0.613 5.613 23 H 0.415 0.585 24 H 0.039 0.961 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.025 0.975 29 H 0.032 0.968 30 H 0.052 0.948 31 H 0.257 0.743 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.157 0.843 36 H 0.137 0.863 37 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.852 -0.857 8.480 10.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.075 4.075 3 N -0.225 5.225 4 C 0.050 3.950 5 C -0.542 4.542 6 H 0.076 0.924 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.214 1.214 13 C 0.012 3.988 14 H 0.112 0.888 15 C -0.202 4.202 16 C 0.117 3.883 17 N -0.240 5.240 18 C 0.018 3.982 19 C -0.335 4.335 20 C 0.154 3.846 21 N -0.438 5.438 22 N -0.237 5.237 23 H 0.253 0.747 24 H 0.058 0.942 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.043 0.957 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.175 0.825 36 H 0.155 0.845 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.262 -0.312 7.828 10.683 hybrid contribution 1.137 -1.087 0.681 1.714 sum -6.126 -1.399 8.509 10.578 Atomic orbital electron populations 1.21845 0.96804 1.00650 1.01216 1.22041 0.93705 0.90365 1.01435 1.62667 1.24925 1.15997 1.18883 1.20319 0.80149 0.99199 0.95302 1.21313 0.92111 1.48173 0.92584 0.92358 1.24910 0.95928 0.96031 0.97664 1.69984 0.97749 1.51192 1.34728 0.86580 0.77941 0.77430 0.86232 1.19842 1.21283 1.21362 1.21315 0.96930 0.94619 0.85904 0.88798 1.21946 1.04298 0.92563 1.01431 1.25716 0.90061 0.89430 0.83089 1.68909 1.07036 1.14462 1.33620 1.22556 0.96162 0.90473 0.89036 1.22566 1.01322 1.10492 0.99129 1.18813 0.88147 0.88423 0.89207 1.69546 1.39849 1.34884 0.99519 1.43224 1.27857 1.45664 1.06992 0.74715 0.94179 0.91826 0.93313 0.89677 0.95669 0.95047 0.93002 0.93350 0.90162 0.90109 0.93138 0.82536 0.84513 0.83882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.85 37.16 0.37 -1.75 16 2 C 0.05 0.95 5.23 -3.82 -0.02 0.93 16 3 N -0.50 -9.71 4.38 -229.48 -1.01 -10.72 16 4 C 0.17 4.19 3.52 -4.98 -0.02 4.17 16 5 C -0.50 -13.56 8.62 -34.44 -0.30 -13.86 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -25.96 13.29 55.43 0.74 -25.22 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.13 1.95 2.65 -68.86 -0.18 1.76 16 14 H 0.09 1.20 6.77 -51.93 -0.35 0.85 16 15 C -0.14 -2.14 8.95 37.16 0.33 -1.81 16 16 C 0.38 6.14 5.67 -154.92 -0.88 5.26 16 17 N -0.52 -9.49 5.47 -10.54 -0.06 -9.54 16 18 C 0.16 2.52 11.16 -17.63 -0.20 2.33 16 19 C -0.31 -4.47 9.97 -39.07 -0.39 -4.86 16 20 C 0.43 6.52 7.87 -155.65 -1.22 5.29 16 21 N -0.80 -12.29 14.19 31.38 0.45 -11.85 16 22 N -0.61 -8.65 5.42 -9.29 -0.05 -8.70 16 23 H 0.42 4.88 8.82 -40.82 -0.36 4.52 16 24 H 0.04 0.51 6.97 -51.93 -0.36 0.15 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 1.73 7.43 -51.93 -0.39 1.34 16 28 H 0.03 0.46 6.16 -51.93 -0.32 0.14 16 29 H 0.03 0.81 5.37 -51.93 -0.28 0.53 16 30 H 0.05 1.34 5.59 -51.93 -0.29 1.05 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.08 1.44 5.96 -51.93 -0.31 1.13 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.16 2.27 8.06 -52.48 -0.42 1.85 16 36 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.35 4.74 8.77 -40.82 -0.36 4.39 16 LS Contribution 299.20 15.07 4.51 4.51 Total: -1.00 -30.40 299.20 -8.15 -38.55 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -5.10 Total: 7.77 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.60 Total: -1.10 kcal Atomic # 7 Polarization: -66.10 SS G_CDS: 0.07 Total: -66.03 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.40 -8.15 -38.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516532233.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.314 kcal (2) G-P(sol) polarization free energy of solvation -30.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds